Atom Nomenclature for 6QB

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 6QB

Atom Name (V3) Atom Name (V2)
C4 C1
C5 C2
C8 C3
C10 C4
C15 C5
C20 C6
C21 C7
C26 C8
C28 C9
C1 C10
N2 N1
C3 C11
N6 N2
N7 N3
N9 N4
C11 C12
C12 C13
N13 N5
C14 C14
C16 C15
N17 N6
C18 C16
O19 O1
C23 C17
O24 O2
C25 C18
C27 C19
C29 C20
C30 C21
F31 F1
CL1 CL1
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18