PDB Chemical Component 6PO

Ideal Model

Chemical Description

Name 9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-6-propoxy-9H-purin-2-amine
Formula C13 H20 N5 O7 P
Formal charge 0
Molecular weight 389.301 g/mol
Component type DNA LINKING
Nonstandard Parent Id DG

Chemical features

Atom count 46
Chiral atom count 3
Chiral atoms C4' C3' C1'
Observed leaving atoms OP3 HOP3
Bond count 48
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-6-propoxy-9H-purin-2-amine
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-(2-azanyl-6-propoxy-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CCCOc1nc(N)nc2n(cnc12)[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3
SMILES (CACTVS) CCCOc1nc(N)nc2n(cnc12)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3
Stereo SMILES (OpenEye) CCCOc1c2c(nc(n1)N)n(cn2)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O
InChI descriptor InChI=1S/C13H20N5O7P/c1-2-3-23-12-10-11(16-13(14)17-12)18(6-15-10)9-4-7(19)8(25-9)5-24-26(20,21)22/h6-9,19H,2-5H2,1H3,(H2,14,16,17)(H2,20,21,22)/t7-,8+,9+/m0/s1
InChIKey descriptor KGDNBXAYKVVLQA-DJLDLDEBSA-N

Status Information

Last modified 2012-06-15
Created 2012-04-27
Release status REL
Model PDB code 4ENK
Processing site RCSB