PDB Chemical Component 6PO

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 6PO

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N2 C2 1.429 1.384
O3' C3' 1.375 1.429
N3 C2 1.370 1.323
N3 C4 1.385 1.329
C2 N1 1.362 1.328
C1' O4' 1.398 1.445
C1' N9 1.443 1.465
C1' C2' 1.481 1.545
O4' C4' 1.449 1.443
C4' C3' 1.467 1.545
C4' C5' 1.423 1.530
C3' C2' 1.472 1.545
C4 N9 1.402 1.372
C4 C5 1.391 1.406
N1 C6 1.363 1.326
N9 C8 1.356 1.364
C5 C6 1.456 1.404
C5 N7 1.384 1.356
C6 O6 1.417 1.355
C5' O5' 1.410 1.429
C8 N7 1.363 1.301
O5' P 1.594 1.610
O6 C1X 1.415 1.429
C1X C2X 1.531 1.530
C3X C2X 1.521 1.530
OP2 P 1.572 1.609
P OP1 1.571 1.481
OP2 HOP2 0.950 0.967
C5' H5' 1.100 1.091
C5' H5'' 1.100 1.090
C4' H4' 1.100 1.090
C3' H3' 1.100 1.089
O3' HO3' 0.949 0.967
C2' H2' 1.100 1.090
C2' H2'' 1.100 1.090
C1' H1' 1.100 1.090
C8 H8 1.080 1.080
N2 HN1 1.000 0.970
N2 HN2 0.999 0.970
C1X H1X1 1.100 1.089
C1X H1X2 1.100 1.091
C2X H2X1 1.100 1.090
C2X H2X2 1.100 1.091
C3X H3X1 1.100 1.090
C3X H3X2 1.101 1.091
C3X H3X3 1.099 1.089
P OP3   1.609
OP3 HOP3   0.968

Bond Angles for 6PO

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O3' C3' C2' 110.8 110.5
O3' C3' H3' 110.7 110.6
C1' N9 C8 122.6 126.3
N9 C1' H1' 109.2 110.4
C1' C2' H2' 111.2 110.5
C1' C2' H2'' 111.1 110.6
O4' C4' H4' 111.1 110.5
C4' C3' C2' 105.3 104.0
C3' C4' H4' 110.8 110.4
C4' C3' H3' 109.4 110.5
C4' C5' H5' 105.6 109.5
C4' C5' H5'' 105.7 109.5
C2' C3' H3' 109.4 110.5
C3' C2' H2' 111.2 110.5
C3' C2' H2'' 111.2 110.5
C4 C5 C6 119.3 118.3
N1 C6 O6 121.7 120.7
N9 C8 N7 109.3 110.0
N9 C8 H8 125.4 125.0
C5 C6 O6 118.0 120.7
C6 O6 C1X 123.7 117.0
N7 C8 H8 125.3 125.0
O5' P OP3   109.5
O6 C1X C2X 117.2 109.5
O6 C1X H1X1 107.5 109.5
O6 C1X H1X2 107.5 109.5
C2X C1X H1X1 107.5 109.5
C2X C1X H1X2 107.5 109.4
C1X C2X H2X1 107.4 109.5
C1X C2X H2X2 107.4 109.4
C3X C2X H2X1 107.4 109.5
C3X C2X H2X2 107.4 109.4
OP2 P OP1 112.1 109.5
P OP2 HOP2 109.5 114.0
OP2 P OP3   109.5
OP1 P OP3   109.5
H5' C5' H5'' 109.5 109.5
H2' C2' H2'' 109.4 110.5
HN1 N2 HN2 109.5 120.0
H1X1 C1X H1X2 109.5 109.5
H2X1 C2X H2X2 109.5 109.5
H3X1 C3X H3X2 109.5 109.5
H3X1 C3X H3X3 109.5 109.6
H3X2 C3X H3X3 109.5 109.5
P OP3 HOP3   114.1

Torsion Angles for 6PO

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C4' C3' O3' C2' 116.7 114.6
O3' C3' C4' H4' 14.1 336.4
C4' C3' O3' H3' 238.2 237.3
C2' C3' O3' H3' 121.5 122.7
O3' C3' C2' H2' 332.7 237.3
O3' C3' C2' H2'' 210.5 359.9
C2 N1 C6 O6 182.0 180.0
O4' C1' C2' H2' 153.7 265.3
O4' C1' C2' H2'' 275.9 142.7
C1' O4' C4' H4' 248.0 281.6
N9 C1' C2' H2' 275.1 24.1
N9 C1' C2' H2'' 37.2 261.5
C1' N9 C8 N7 185.7 180.0
C1' N9 C8 H8 5.7 0.1
C1' C2' C3' H3' 213.9 241.3
C3' C2' C1' H2' 241.1 118.6
C3' C2' C1' H2'' 118.9 241.3
H2' C2' C1' H2'' 237.9 122.7
C3' C4' O4' H4' 120.9 118.9
O4' C4' C3' H3' 130.5 94.7
O4' C4' C5' H5' 174.8 309.6
O4' C4' C5' H5'' 290.7 189.6
O3' C3' C4' C2' 240.0 241.4
O3' C3' C4' H3' 122.5 122.7
O4' C4' C3' H4' 238.9 241.0
C3' C4' C5' H5' 290.1 65.0
C3' C4' C5' H5'' 46.1 305.0
C2' C3' C4' H3' 242.6 241.3
C4' C3' C2' H2' 212.5 118.6
C4' C3' C2' H2'' 90.3 241.3
H5' C5' C4' H5'' 244.0 120.0
O3' C3' C2' H3' 237.7 237.3
C1' C2' C3' H2' 118.9 241.4
C1' C2' C3' H2'' 241.1 118.7
C2' C3' C4' H4' 134.1 95.0
C4' C3' C2' H3' 117.5 118.7
H2' C2' C3' H2'' 122.2 237.4
C4 N9 C1' H1' 321.0 325.5
C4 N9 C8 H8 180.2 180.3
C4 C5 C6 O6 177.9 180.3
C5 C6 N1 O6 177.9 179.9
N1 C6 O6 C1X 357.3 360.0
C8 N9 C1' H1' 134.4 145.8
N7 C8 N9 H8 180.0 179.9
N1 C6 C5 O6 182.0 180.1
C5 C6 O6 C1X 179.4 180.0
C5 N7 C8 H8 179.9 180.0
C6 O6 C1X C2X 191.8 180.0
C6 O6 C1X H1X1 312.9 300.0
C6 O6 C1X H1X2 70.7 60.0
C5' O5' P OP3   175.0
N9 C8 N7 H8 180.0 180.1
O5' P OP2 HOP2 232.0 300.0
OP2 P O5' OP3   120.0
OP1 P O5' OP3   240.0
O5' P OP3 HOP3   180.0
C2X C1X O6 H1X1 238.9 240.0
C2X C1X O6 H1X2 121.1 119.9
O6 C1X C2X H2X1 330.9 300.1
O6 C1X C2X H2X2 88.5 60.0
H1X1 C1X O6 H1X2 242.2 239.9
O6 C1X C2X H1X1 121.1 120.0
O6 C1X C2X H1X2 238.9 240.0
C3X C2X C1X H2X1 238.9 239.9
C3X C2X C1X H2X2 121.2 120.0
H1X1 C1X C2X H1X2 117.8 120.0
H2X1 C2X C1X H2X2 242.3 240.0
C3X C2X C1X H1X1 88.6 59.9
C3X C2X C1X H1X2 330.8 300.0
C1X C2X C3X H2X1 121.2 120.1
C1X C2X C3X H2X2 238.8 240.1
H2X1 C2X C3X H2X2 117.7 120.0
O5' P OP2 OP3   240.0
OP1 P OP2 OP3   120.0
OP2 P OP3 HOP3   60.0
O5' P OP1 OP3   120.0
OP1 P OP2 HOP2 0.0 180.0
OP2 P OP1 OP3   240.0
OP1 P OP3 HOP3   300.0
HOP2 OP2 P OP1 0.0 180.0
HOP2 OP2 P OP3   60.0
C4' C5' H5' H5'' 113.4 240.0
C4' C5' H5'' H5' 246.7 120.0
H4' C4' C3' C2' 134.1 95.0
H4' C4' C3' H3' 251.6 213.6
H4' C4' C5' H5' 50.9 187.2
H4' C4' C5' H5'' 166.8 67.2
O3' C3' H3' C2' 122.4 122.7
C4' C3' H3' C2' 245.1 245.4
H3' C3' C4' H4' 251.6 213.6
H3' C3' C2' H2' 95.0 360.0
H3' C3' C2' H2'' 332.8 122.6
HO3' O3' C3' C2' 63.3 65.4
HO3' O3' C3' H3' 301.8 302.7
C1' C2' H2' H2'' 123.1 237.3
H2' C2' C3' H3' 95.0 360.0
C3' C2' H2' H2'' 236.8 122.7
C1' C2' H2'' H2' 236.9 122.6
H2'' C2' C3' H3' 332.8 122.6
C3' C2' H2'' H2' 123.2 237.4
H1' C1' N9 C8 134.4 145.8
H1' C1' C2' H2' 35.8 146.5
H1' C1' C2' H2'' 158.0 23.8
N9 C8 H8 N7 180.0 179.9
O6 C1X H1X1 C2X 233.0 240.0
O6 C1X H1X1 H1X2 116.5 120.0
C2X C1X H1X1 H1X2 243.5 240.1
H1X1 C1X C2X H2X1 209.7 180.0
H1X1 C1X C2X H2X2 327.4 300.0
O6 C1X H1X2 C2X 127.0 120.0
O6 C1X H1X2 H1X1 243.5 239.9
C2X C1X H1X2 H1X1 116.5 120.0
H1X2 C1X C2X H2X1 92.0 60.0
H1X2 C1X C2X H2X2 209.7 180.0
H2X1 C2X C1X H1X1 209.7 180.0
H2X1 C2X C1X H1X2 92.0 60.0
C1X C2X H2X1 H2X2 116.3 119.9
C3X C2X H2X1 H2X2 243.7 240.0
H2X2 C2X C1X H1X1 327.4 300.0
H2X2 C2X C1X H1X2 209.7 180.0
C1X C2X H2X2 H2X1 243.7 240.0
C3X C2X H2X2 H2X1 116.3 120.0
H3X1 C3X C2X H2X1 58.8 180.0
H3X1 C3X C2X H2X2 301.2 60.0
H3X2 C3X H3X1 H3X3 120.0 120.1
H3X2 C3X C2X H2X1 178.9 299.9
H3X2 C3X C2X H2X2 61.2 179.9
H3X1 C3X H3X2 H3X3 240.0 239.9
H3X3 C3X C2X H2X1 298.8 59.9
H3X3 C3X C2X H2X2 181.2 299.9
H3X1 C3X H3X3 H3X2 120.0 120.1
OP2 P OP3 OP1   120.0
OP3 P OP2 HOP2   60.0