PDB Chemical Component 6PO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 6PO
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N2 |
C2 |
1.429 |
1.384 |
O3' |
C3' |
1.375 |
1.429 |
N3 |
C2 |
1.370 |
1.323 |
N3 |
C4 |
1.385 |
1.329 |
C2 |
N1 |
1.362 |
1.328 |
C1' |
O4' |
1.398 |
1.445 |
C1' |
N9 |
1.443 |
1.465 |
C1' |
C2' |
1.481 |
1.545 |
O4' |
C4' |
1.449 |
1.443 |
C4' |
C3' |
1.467 |
1.545 |
C4' |
C5' |
1.423 |
1.530 |
C3' |
C2' |
1.472 |
1.545 |
C4 |
N9 |
1.402 |
1.372 |
C4 |
C5 |
1.391 |
1.406 |
N1 |
C6 |
1.363 |
1.326 |
N9 |
C8 |
1.356 |
1.364 |
C5 |
C6 |
1.456 |
1.404 |
C5 |
N7 |
1.384 |
1.356 |
C6 |
O6 |
1.417 |
1.355 |
C5' |
O5' |
1.410 |
1.429 |
C8 |
N7 |
1.363 |
1.301 |
O5' |
P |
1.594 |
1.610 |
O6 |
C1X |
1.415 |
1.429 |
C1X |
C2X |
1.531 |
1.530 |
C3X |
C2X |
1.521 |
1.530 |
OP2 |
P |
1.572 |
1.609 |
P |
OP1 |
1.571 |
1.481 |
OP2 |
HOP2 |
0.950 |
0.967 |
C5' |
H5' |
1.100 |
1.091 |
C5' |
H5'' |
1.100 |
1.090 |
C4' |
H4' |
1.100 |
1.090 |
C3' |
H3' |
1.100 |
1.089 |
O3' |
HO3' |
0.949 |
0.967 |
C2' |
H2' |
1.100 |
1.090 |
C2' |
H2'' |
1.100 |
1.090 |
C1' |
H1' |
1.100 |
1.090 |
C8 |
H8 |
1.080 |
1.080 |
N2 |
HN1 |
1.000 |
0.970 |
N2 |
HN2 |
0.999 |
0.970 |
C1X |
H1X1 |
1.100 |
1.089 |
C1X |
H1X2 |
1.100 |
1.091 |
C2X |
H2X1 |
1.100 |
1.090 |
C2X |
H2X2 |
1.100 |
1.091 |
C3X |
H3X1 |
1.100 |
1.090 |
C3X |
H3X2 |
1.101 |
1.091 |
C3X |
H3X3 |
1.099 |
1.089 |
P |
OP3 |
|
1.609 |
OP3 |
HOP3 |
|
0.968 |
Bond Angles for 6PO
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O3' |
C3' |
C2' |
110.8 |
110.5 |
O3' |
C3' |
H3' |
110.7 |
110.6 |
C1' |
N9 |
C8 |
122.6 |
126.3 |
N9 |
C1' |
H1' |
109.2 |
110.4 |
C1' |
C2' |
H2' |
111.2 |
110.5 |
C1' |
C2' |
H2'' |
111.1 |
110.6 |
O4' |
C4' |
H4' |
111.1 |
110.5 |
C4' |
C3' |
C2' |
105.3 |
104.0 |
C3' |
C4' |
H4' |
110.8 |
110.4 |
C4' |
C3' |
H3' |
109.4 |
110.5 |
C4' |
C5' |
H5' |
105.6 |
109.5 |
C4' |
C5' |
H5'' |
105.7 |
109.5 |
C2' |
C3' |
H3' |
109.4 |
110.5 |
C3' |
C2' |
H2' |
111.2 |
110.5 |
C3' |
C2' |
H2'' |
111.2 |
110.5 |
C4 |
C5 |
C6 |
119.3 |
118.3 |
N1 |
C6 |
O6 |
121.7 |
120.7 |
N9 |
C8 |
N7 |
109.3 |
110.0 |
N9 |
C8 |
H8 |
125.4 |
125.0 |
C5 |
C6 |
O6 |
118.0 |
120.7 |
C6 |
O6 |
C1X |
123.7 |
117.0 |
N7 |
C8 |
H8 |
125.3 |
125.0 |
O5' |
P |
OP3 |
|
109.5 |
O6 |
C1X |
C2X |
117.2 |
109.5 |
O6 |
C1X |
H1X1 |
107.5 |
109.5 |
O6 |
C1X |
H1X2 |
107.5 |
109.5 |
C2X |
C1X |
H1X1 |
107.5 |
109.5 |
C2X |
C1X |
H1X2 |
107.5 |
109.4 |
C1X |
C2X |
H2X1 |
107.4 |
109.5 |
C1X |
C2X |
H2X2 |
107.4 |
109.4 |
C3X |
C2X |
H2X1 |
107.4 |
109.5 |
C3X |
C2X |
H2X2 |
107.4 |
109.4 |
OP2 |
P |
OP1 |
112.1 |
109.5 |
P |
OP2 |
HOP2 |
109.5 |
114.0 |
OP2 |
P |
OP3 |
|
109.5 |
OP1 |
P |
OP3 |
|
109.5 |
H5' |
C5' |
H5'' |
109.5 |
109.5 |
H2' |
C2' |
H2'' |
109.4 |
110.5 |
HN1 |
N2 |
HN2 |
109.5 |
120.0 |
H1X1 |
C1X |
H1X2 |
109.5 |
109.5 |
H2X1 |
C2X |
H2X2 |
109.5 |
109.5 |
H3X1 |
C3X |
H3X2 |
109.5 |
109.5 |
H3X1 |
C3X |
H3X3 |
109.5 |
109.6 |
H3X2 |
C3X |
H3X3 |
109.5 |
109.5 |
P |
OP3 |
HOP3 |
|
114.1 |
Torsion Angles for 6PO
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C4' |
C3' |
O3' |
C2' |
116.7 |
114.6 |
O3' |
C3' |
C4' |
H4' |
14.1 |
336.4 |
C4' |
C3' |
O3' |
H3' |
238.2 |
237.3 |
C2' |
C3' |
O3' |
H3' |
121.5 |
122.7 |
O3' |
C3' |
C2' |
H2' |
332.7 |
237.3 |
O3' |
C3' |
C2' |
H2'' |
210.5 |
359.9 |
C2 |
N1 |
C6 |
O6 |
182.0 |
180.0 |
O4' |
C1' |
C2' |
H2' |
153.7 |
265.3 |
O4' |
C1' |
C2' |
H2'' |
275.9 |
142.7 |
C1' |
O4' |
C4' |
H4' |
248.0 |
281.6 |
N9 |
C1' |
C2' |
H2' |
275.1 |
24.1 |
N9 |
C1' |
C2' |
H2'' |
37.2 |
261.5 |
C1' |
N9 |
C8 |
N7 |
185.7 |
180.0 |
C1' |
N9 |
C8 |
H8 |
5.7 |
0.1 |
C1' |
C2' |
C3' |
H3' |
213.9 |
241.3 |
C3' |
C2' |
C1' |
H2' |
241.1 |
118.6 |
C3' |
C2' |
C1' |
H2'' |
118.9 |
241.3 |
H2' |
C2' |
C1' |
H2'' |
237.9 |
122.7 |
C3' |
C4' |
O4' |
H4' |
120.9 |
118.9 |
O4' |
C4' |
C3' |
H3' |
130.5 |
94.7 |
O4' |
C4' |
C5' |
H5' |
174.8 |
309.6 |
O4' |
C4' |
C5' |
H5'' |
290.7 |
189.6 |
O3' |
C3' |
C4' |
C2' |
240.0 |
241.4 |
O3' |
C3' |
C4' |
H3' |
122.5 |
122.7 |
O4' |
C4' |
C3' |
H4' |
238.9 |
241.0 |
C3' |
C4' |
C5' |
H5' |
290.1 |
65.0 |
C3' |
C4' |
C5' |
H5'' |
46.1 |
305.0 |
C2' |
C3' |
C4' |
H3' |
242.6 |
241.3 |
C4' |
C3' |
C2' |
H2' |
212.5 |
118.6 |
C4' |
C3' |
C2' |
H2'' |
90.3 |
241.3 |
H5' |
C5' |
C4' |
H5'' |
244.0 |
120.0 |
O3' |
C3' |
C2' |
H3' |
237.7 |
237.3 |
C1' |
C2' |
C3' |
H2' |
118.9 |
241.4 |
C1' |
C2' |
C3' |
H2'' |
241.1 |
118.7 |
C2' |
C3' |
C4' |
H4' |
134.1 |
95.0 |
C4' |
C3' |
C2' |
H3' |
117.5 |
118.7 |
H2' |
C2' |
C3' |
H2'' |
122.2 |
237.4 |
C4 |
N9 |
C1' |
H1' |
321.0 |
325.5 |
C4 |
N9 |
C8 |
H8 |
180.2 |
180.3 |
C4 |
C5 |
C6 |
O6 |
177.9 |
180.3 |
C5 |
C6 |
N1 |
O6 |
177.9 |
179.9 |
N1 |
C6 |
O6 |
C1X |
357.3 |
360.0 |
C8 |
N9 |
C1' |
H1' |
134.4 |
145.8 |
N7 |
C8 |
N9 |
H8 |
180.0 |
179.9 |
N1 |
C6 |
C5 |
O6 |
182.0 |
180.1 |
C5 |
C6 |
O6 |
C1X |
179.4 |
180.0 |
C5 |
N7 |
C8 |
H8 |
179.9 |
180.0 |
C6 |
O6 |
C1X |
C2X |
191.8 |
180.0 |
C6 |
O6 |
C1X |
H1X1 |
312.9 |
300.0 |
C6 |
O6 |
C1X |
H1X2 |
70.7 |
60.0 |
C5' |
O5' |
P |
OP3 |
|
175.0 |
N9 |
C8 |
N7 |
H8 |
180.0 |
180.1 |
O5' |
P |
OP2 |
HOP2 |
232.0 |
300.0 |
OP2 |
P |
O5' |
OP3 |
|
120.0 |
OP1 |
P |
O5' |
OP3 |
|
240.0 |
O5' |
P |
OP3 |
HOP3 |
|
180.0 |
C2X |
C1X |
O6 |
H1X1 |
238.9 |
240.0 |
C2X |
C1X |
O6 |
H1X2 |
121.1 |
119.9 |
O6 |
C1X |
C2X |
H2X1 |
330.9 |
300.1 |
O6 |
C1X |
C2X |
H2X2 |
88.5 |
60.0 |
H1X1 |
C1X |
O6 |
H1X2 |
242.2 |
239.9 |
O6 |
C1X |
C2X |
H1X1 |
121.1 |
120.0 |
O6 |
C1X |
C2X |
H1X2 |
238.9 |
240.0 |
C3X |
C2X |
C1X |
H2X1 |
238.9 |
239.9 |
C3X |
C2X |
C1X |
H2X2 |
121.2 |
120.0 |
H1X1 |
C1X |
C2X |
H1X2 |
117.8 |
120.0 |
H2X1 |
C2X |
C1X |
H2X2 |
242.3 |
240.0 |
C3X |
C2X |
C1X |
H1X1 |
88.6 |
59.9 |
C3X |
C2X |
C1X |
H1X2 |
330.8 |
300.0 |
C1X |
C2X |
C3X |
H2X1 |
121.2 |
120.1 |
C1X |
C2X |
C3X |
H2X2 |
238.8 |
240.1 |
H2X1 |
C2X |
C3X |
H2X2 |
117.7 |
120.0 |
O5' |
P |
OP2 |
OP3 |
|
240.0 |
OP1 |
P |
OP2 |
OP3 |
|
120.0 |
OP2 |
P |
OP3 |
HOP3 |
|
60.0 |
O5' |
P |
OP1 |
OP3 |
|
120.0 |
OP1 |
P |
OP2 |
HOP2 |
0.0 |
180.0 |
OP2 |
P |
OP1 |
OP3 |
|
240.0 |
OP1 |
P |
OP3 |
HOP3 |
|
300.0 |
HOP2 |
OP2 |
P |
OP1 |
0.0 |
180.0 |
HOP2 |
OP2 |
P |
OP3 |
|
60.0 |
C4' |
C5' |
H5' |
H5'' |
113.4 |
240.0 |
C4' |
C5' |
H5'' |
H5' |
246.7 |
120.0 |
H4' |
C4' |
C3' |
C2' |
134.1 |
95.0 |
H4' |
C4' |
C3' |
H3' |
251.6 |
213.6 |
H4' |
C4' |
C5' |
H5' |
50.9 |
187.2 |
H4' |
C4' |
C5' |
H5'' |
166.8 |
67.2 |
O3' |
C3' |
H3' |
C2' |
122.4 |
122.7 |
C4' |
C3' |
H3' |
C2' |
245.1 |
245.4 |
H3' |
C3' |
C4' |
H4' |
251.6 |
213.6 |
H3' |
C3' |
C2' |
H2' |
95.0 |
360.0 |
H3' |
C3' |
C2' |
H2'' |
332.8 |
122.6 |
HO3' |
O3' |
C3' |
C2' |
63.3 |
65.4 |
HO3' |
O3' |
C3' |
H3' |
301.8 |
302.7 |
C1' |
C2' |
H2' |
H2'' |
123.1 |
237.3 |
H2' |
C2' |
C3' |
H3' |
95.0 |
360.0 |
C3' |
C2' |
H2' |
H2'' |
236.8 |
122.7 |
C1' |
C2' |
H2'' |
H2' |
236.9 |
122.6 |
H2'' |
C2' |
C3' |
H3' |
332.8 |
122.6 |
C3' |
C2' |
H2'' |
H2' |
123.2 |
237.4 |
H1' |
C1' |
N9 |
C8 |
134.4 |
145.8 |
H1' |
C1' |
C2' |
H2' |
35.8 |
146.5 |
H1' |
C1' |
C2' |
H2'' |
158.0 |
23.8 |
N9 |
C8 |
H8 |
N7 |
180.0 |
179.9 |
O6 |
C1X |
H1X1 |
C2X |
233.0 |
240.0 |
O6 |
C1X |
H1X1 |
H1X2 |
116.5 |
120.0 |
C2X |
C1X |
H1X1 |
H1X2 |
243.5 |
240.1 |
H1X1 |
C1X |
C2X |
H2X1 |
209.7 |
180.0 |
H1X1 |
C1X |
C2X |
H2X2 |
327.4 |
300.0 |
O6 |
C1X |
H1X2 |
C2X |
127.0 |
120.0 |
O6 |
C1X |
H1X2 |
H1X1 |
243.5 |
239.9 |
C2X |
C1X |
H1X2 |
H1X1 |
116.5 |
120.0 |
H1X2 |
C1X |
C2X |
H2X1 |
92.0 |
60.0 |
H1X2 |
C1X |
C2X |
H2X2 |
209.7 |
180.0 |
H2X1 |
C2X |
C1X |
H1X1 |
209.7 |
180.0 |
H2X1 |
C2X |
C1X |
H1X2 |
92.0 |
60.0 |
C1X |
C2X |
H2X1 |
H2X2 |
116.3 |
119.9 |
C3X |
C2X |
H2X1 |
H2X2 |
243.7 |
240.0 |
H2X2 |
C2X |
C1X |
H1X1 |
327.4 |
300.0 |
H2X2 |
C2X |
C1X |
H1X2 |
209.7 |
180.0 |
C1X |
C2X |
H2X2 |
H2X1 |
243.7 |
240.0 |
C3X |
C2X |
H2X2 |
H2X1 |
116.3 |
120.0 |
H3X1 |
C3X |
C2X |
H2X1 |
58.8 |
180.0 |
H3X1 |
C3X |
C2X |
H2X2 |
301.2 |
60.0 |
H3X2 |
C3X |
H3X1 |
H3X3 |
120.0 |
120.1 |
H3X2 |
C3X |
C2X |
H2X1 |
178.9 |
299.9 |
H3X2 |
C3X |
C2X |
H2X2 |
61.2 |
179.9 |
H3X1 |
C3X |
H3X2 |
H3X3 |
240.0 |
239.9 |
H3X3 |
C3X |
C2X |
H2X1 |
298.8 |
59.9 |
H3X3 |
C3X |
C2X |
H2X2 |
181.2 |
299.9 |
H3X1 |
C3X |
H3X3 |
H3X2 |
120.0 |
120.1 |
OP2 |
P |
OP3 |
OP1 |
|
120.0 |
OP3 |
P |
OP2 |
HOP2 |
|
60.0 |