PDB Chemical Component 6OO

Ideal Model

Chemical Description

Name 2'-O-methyl-5'-O-thiophosphonocytidine
Formula C10 H16 N3 O7 P S
Formal charge 0
Molecular weight 353.289 g/mol
Component type RNA linking
Nonstandard Parent Id C

Chemical features

Atom count 38
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Observed leaving atoms O1
Bond count 39
Aromatic bond count 0

Chemical Identifiers

Systematic name (OpenEye OEToolkits) [(2~{R},3~{R},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methoxy-sulfanyl-phosphinic acid

Chemical Descriptors

Stereo SMILES (CACTVS) CO[C@@H]1[C@H](O)[C@@H](CO[P](O)(S)=O)O[C@H]1N2C=CC(=NC2=O)N
SMILES (CACTVS) CO[CH]1[CH](O)[CH](CO[P](O)(S)=O)O[CH]1N2C=CC(=NC2=O)N
Stereo SMILES (OpenEye) CO[C@@H]1[C@@H]([C@H](O[C@H]1N2C=CC(=NC2=O)N)COP(=O)(O)S)O
InChI descriptor InChI=1S/C10H16N3O7PS/c1-18-8-7(14)5(4-19-21(16,17)22)20-9(8)13-3-2-6(11)12-10(13)15/h2-3,5,7-9,14H,4H2,1H3,(H2,11,12,15)(H2,16,17,22)/t5-,7-,8-,9-/m1/s1
InChIKey descriptor JKIZWHJBBPPNBB-ZOQUXTDFSA-N

Status Information

Last modified 2016-07-15
Created 2016-05-13
Release status REL
Model PDB code 5JS2
Processing site RCSB