PDB Chemical Component 6OO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 6OO
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N4 |
C4 |
1.425 |
1.376 |
| N3 |
C4 |
1.323 |
1.327 |
| N3 |
C2 |
1.337 |
1.333 |
| C4 |
C5 |
1.381 |
1.410 |
| O2 |
C2 |
1.187 |
1.220 |
| C2 |
N1 |
1.320 |
1.346 |
| C5 |
C6 |
1.422 |
1.354 |
| N1 |
C6 |
1.314 |
1.362 |
| N1 |
C1' |
1.413 |
1.464 |
| CM' |
O2' |
1.416 |
1.429 |
| C1' |
C2' |
1.626 |
1.554 |
| C1' |
O4' |
1.288 |
1.444 |
| C2' |
O2' |
1.463 |
1.429 |
| C2' |
C3' |
1.223 |
1.547 |
| O4' |
C4' |
1.489 |
1.438 |
| C3' |
C4' |
1.585 |
1.541 |
| C3' |
O3' |
1.499 |
1.429 |
| O5' |
P |
1.525 |
1.610 |
| O5' |
C5' |
1.452 |
1.428 |
| OP2 |
P |
1.529 |
1.481 |
| C4' |
C5' |
1.415 |
1.529 |
| P |
SP1 |
1.929 |
2.119 |
| P |
O1 |
1.577 |
1.610 |
| C5 |
H1 |
1.080 |
1.080 |
| C6 |
H2 |
1.080 |
1.080 |
| SP1 |
H3 |
1.300 |
1.345 |
| C5' |
H4 |
1.100 |
1.090 |
| C5' |
H5 |
1.100 |
1.091 |
| C4' |
H6 |
1.100 |
1.091 |
| C3' |
H7 |
1.100 |
1.090 |
| O3' |
H8 |
0.950 |
0.968 |
| C2' |
H9 |
1.099 |
1.090 |
| C1' |
H10 |
1.100 |
1.091 |
| CM' |
H11 |
1.100 |
1.090 |
| CM' |
H12 |
1.099 |
1.090 |
| CM' |
H13 |
1.100 |
1.090 |
| N4 |
H14 |
1.000 |
0.970 |
| N4 |
H15 |
1.000 |
0.970 |
| O1 |
H16 |
0.950 |
0.967 |
Bond Angles for 6OO
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4 |
C5 |
C6 |
117.4 |
119.0 |
| C4 |
C5 |
H1 |
121.3 |
120.5 |
| O2 |
C2 |
N1 |
122.0 |
119.5 |
| C2 |
N1 |
C6 |
121.4 |
120.3 |
| C2 |
N1 |
C1' |
121.6 |
119.8 |
| C6 |
C5 |
H1 |
121.3 |
120.5 |
| C5 |
C6 |
H2 |
120.4 |
120.4 |
| N1 |
C6 |
H2 |
120.4 |
120.3 |
| N1 |
C1' |
H10 |
111.2 |
110.6 |
| C1' |
C2' |
H9 |
103.4 |
110.9 |
| O2' |
C2' |
H9 |
104.9 |
110.8 |
| C2' |
C3' |
H7 |
109.6 |
110.6 |
| O4' |
C4' |
H6 |
108.6 |
109.9 |
| C3' |
C4' |
H6 |
107.4 |
109.9 |
| O3' |
C3' |
H7 |
105.8 |
110.4 |
| C3' |
O3' |
H8 |
109.5 |
114.0 |
| O5' |
P |
O1 |
103.9 |
109.5 |
| O5' |
C5' |
H4 |
108.2 |
109.5 |
| O5' |
C5' |
H5 |
108.2 |
109.5 |
| OP2 |
P |
O1 |
110.4 |
109.5 |
| C4' |
C5' |
H4 |
108.2 |
109.5 |
| C4' |
C5' |
H5 |
108.2 |
109.5 |
| SP1 |
P |
O1 |
100.3 |
109.5 |
| P |
SP1 |
H3 |
102.0 |
103.0 |
| P |
O1 |
H16 |
109.5 |
114.0 |
| H4 |
C5' |
H5 |
109.5 |
109.4 |
| H11 |
CM' |
H12 |
109.4 |
109.5 |
| H11 |
CM' |
H13 |
109.5 |
109.5 |
| H12 |
CM' |
H13 |
109.5 |
109.5 |
| H14 |
N4 |
H15 |
120.0 |
120.0 |
Torsion Angles for 6OO
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N4 |
C4 |
C5 |
H1 |
0.0 |
0.2 |
| N3 |
C4 |
C5 |
H1 |
180.3 |
180.0 |
| C6 |
C5 |
C4 |
H1 |
180.0 |
179.8 |
| C4 |
C5 |
C6 |
H2 |
179.1 |
180.0 |
| O2 |
C2 |
N1 |
C6 |
179.7 |
180.0 |
| O2 |
C2 |
N1 |
C1' |
1.8 |
360.0 |
| C2 |
N1 |
C6 |
H2 |
181.2 |
180.0 |
| C2 |
N1 |
C1' |
H10 |
352.8 |
172.0 |
| C4 |
C5 |
C6 |
H1 |
180.0 |
180.2 |
| C2 |
N1 |
C6 |
C5 |
1.1 |
359.5 |
| N1 |
C6 |
C5 |
H2 |
180.0 |
180.5 |
| C2 |
N1 |
C6 |
C1' |
181.9 |
180.0 |
| N1 |
C6 |
C5 |
H1 |
179.2 |
180.3 |
| C5 |
C6 |
N1 |
H2 |
180.0 |
179.5 |
| C2 |
N1 |
C1' |
C6 |
178.1 |
180.0 |
| C1' |
N1 |
C6 |
H2 |
359.2 |
0.0 |
| N1 |
C1' |
C2' |
H9 |
342.0 |
37.4 |
| CM' |
O2' |
C2' |
H9 |
334.7 |
32.2 |
| C2 |
N1 |
C1' |
C2' |
107.6 |
295.0 |
| O2' |
C2' |
C1' |
H9 |
247.9 |
236.4 |
| C1' |
C2' |
C3' |
H7 |
274.9 |
220.4 |
| C2 |
N1 |
C1' |
O4' |
222.5 |
49.1 |
| C1' |
O4' |
C4' |
H6 |
253.2 |
267.0 |
| C1' |
C2' |
O2' |
H9 |
111.2 |
123.6 |
| O2' |
C2' |
C3' |
H7 |
146.3 |
102.2 |
| C2' |
C3' |
C4' |
H6 |
91.3 |
117.5 |
| O3' |
C3' |
C2' |
H7 |
240.6 |
237.5 |
| C2' |
C3' |
O3' |
H8 |
180.0 |
183.8 |
| C3' |
C4' |
O4' |
H6 |
114.2 |
119.5 |
| O4' |
C4' |
C5' |
H4 |
210.2 |
306.7 |
| O4' |
C4' |
C5' |
H5 |
91.7 |
186.7 |
| O4' |
C4' |
C3' |
H6 |
245.0 |
240.5 |
| C3' |
C4' |
C5' |
H4 |
328.6 |
64.7 |
| C3' |
C4' |
C5' |
H5 |
210.0 |
304.7 |
| C2' |
C3' |
O3' |
H7 |
121.4 |
122.7 |
| O3' |
C3' |
C4' |
H6 |
322.8 |
358.8 |
| OP2 |
P |
O5' |
O1 |
237.3 |
240.0 |
| SP1 |
P |
O5' |
O1 |
104.2 |
120.0 |
| O5' |
P |
SP1 |
H3 |
132.7 |
300.0 |
| O5' |
P |
O1 |
H16 |
232.2 |
180.1 |
| C5' |
O5' |
P |
O1 |
224.3 |
175.0 |
| C4' |
C5' |
O5' |
H4 |
239.3 |
240.0 |
| C4' |
C5' |
O5' |
H5 |
120.8 |
120.1 |
| H4 |
C5' |
O5' |
H5 |
241.5 |
240.1 |
| O5' |
P |
OP2 |
O1 |
119.4 |
120.0 |
| SP1 |
P |
OP2 |
O1 |
245.1 |
240.0 |
| OP2 |
P |
SP1 |
H3 |
360.0 |
180.0 |
| OP2 |
P |
O1 |
H16 |
0.0 |
300.1 |
| O5' |
C5' |
C4' |
H4 |
120.7 |
120.0 |
| O5' |
C5' |
C4' |
H5 |
239.3 |
240.0 |
| H4 |
C5' |
C4' |
H5 |
118.5 |
119.9 |
| O5' |
P |
SP1 |
O1 |
253.0 |
240.0 |
| OP2 |
P |
SP1 |
O1 |
120.2 |
120.0 |
| SP1 |
P |
O1 |
H16 |
126.0 |
60.1 |
| O1 |
P |
SP1 |
H3 |
239.8 |
60.0 |
| C4 |
C5 |
H1 |
C6 |
180.0 |
179.8 |
| H1 |
C5 |
C6 |
H2 |
359.1 |
359.8 |
| H2 |
C6 |
C5 |
H1 |
359.1 |
359.8 |
| H3 |
SP1 |
P |
O1 |
239.8 |
60.0 |
| O5' |
C5' |
H4 |
H5 |
117.7 |
120.0 |
| C4' |
C5' |
H4 |
H5 |
242.3 |
240.0 |
| O5' |
C5' |
H5 |
H4 |
242.3 |
240.0 |
| C4' |
C5' |
H5 |
H4 |
117.7 |
120.0 |
| H6 |
C4' |
C5' |
H4 |
89.0 |
185.7 |
| H6 |
C4' |
C5' |
H5 |
330.5 |
65.7 |
| H7 |
C3' |
C4' |
H6 |
207.0 |
236.3 |
| H7 |
C3' |
O3' |
H8 |
58.6 |
61.2 |
| H8 |
O3' |
C3' |
H7 |
58.6 |
61.2 |
| H9 |
C2' |
C3' |
H7 |
25.8 |
338.6 |
| H10 |
C1' |
C2' |
H9 |
99.0 |
160.4 |
| H12 |
CM' |
H11 |
H13 |
120.0 |
120.0 |
| H11 |
CM' |
H12 |
H13 |
240.0 |
239.9 |
| H11 |
CM' |
H13 |
H12 |
120.0 |
120.0 |