PDB Chemical Component 6NW

Ideal Model

Chemical Description

Name 2'-O-methyl-5'-O-thiophosphonoadenosine
Formula C11 H16 N5 O6 P S
Formal charge 0
Molecular weight 377.313 g/mol
Component type RNA linking
Nonstandard Parent Id A

Chemical features

Atom count 40
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Observed leaving atoms HO3' OP3 HOP3
Bond count 42
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 2'-O-methyl-5'-O-thiophosphonoadenosine
Systematic name (OpenEye OEToolkits) [(2~{R},3~{R},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methoxy-sulfanyl-phosphinic acid

Chemical Descriptors

Stereo SMILES (CACTVS) CO[C@@H]1[C@H](O)[C@@H](CO[P](O)(S)=O)O[C@H]1n2cnc3c(N)ncnc23
SMILES (CACTVS) CO[CH]1[CH](O)[CH](CO[P](O)(S)=O)O[CH]1n2cnc3c(N)ncnc23
Stereo SMILES (OpenEye) CO[C@@H]1[C@@H]([C@H](O[C@H]1n2cnc3c2ncnc3N)COP(=O)(O)S)O
InChI descriptor InChI=1S/C11H16N5O6PS/c1-20-8-7(17)5(2-21-23(18,19)24)22-11(8)16-4-15-6-9(12)13-3-14-10(6)16/h3-5,7-8,11,17H,2H2,1H3,(H2,12,13,14)(H2,18,19,24)/t5-,7-,8-,11-/m1/s1
InChIKey descriptor OXNLMRLCWQEYRW-IOSLPCCCSA-N

Status Information

Last modified 2016-07-15
Created 2016-05-11
Release status REL
Model PDB code 5JS2
Processing site RCSB