PDB Chemical Component 6NW

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 6NW

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P SP1 1.959 2.120
P OP2 1.509 1.480
P O5' 1.487 1.610
O5' C5' 1.349 1.429
C5' C4' 1.556 1.530
C4' O4' 1.267 1.438
C4' C3' 1.486 1.541
O4' C1' 1.598 1.444
C3' O3' 1.298 1.429
C3' C2' 1.529 1.548
C2' O2' 1.456 1.429
C2' C1' 1.257 1.550
O2' CM' 1.373 1.429
C1' N9 1.431 1.465
N9 C8 1.335 1.364
N9 C4 1.414 1.372
C8 N7 1.324 1.301
N7 C5 1.401 1.356
C5 C6 1.447 1.405
C5 C4 1.362 1.405
C6 N6 1.430 1.385
C6 N1 1.387 1.328
N1 C2 1.310 1.321
C2 N3 1.348 1.316
N3 C4 1.416 1.329
SP1 H1 1.300 1.345
C5' H5'' 1.100 1.090
C4' H4' 1.100 1.090
C3' H3' 1.100 1.089
O3' HO3' 0.950 0.968
C2' H2' 1.100 1.090
C1' H7 1.100 1.090
CM' H11 1.100 1.089
CM' H9 1.100 1.091
CM' H10 1.101 1.091
C8 H8 1.080 1.079
N6 H61 1.000 0.970
N6 H62 1.000 0.971
C2 H2 1.080 1.080
C5' H5' 1.100 1.090
P OP3 1.550 1.610
OP3 HOP3 0.951 0.967

Bond Angles for 6NW

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
SP1 P OP2 105.5 109.5
SP1 P O5' 106.1 109.5
P SP1 H1 102.0 103.0
SP1 P OP3 123.9 109.5
OP2 P O5' 111.0 109.5
OP2 P OP3 107.8 109.5
P O5' C5' 110.4 123.0
O5' P OP3 102.3 109.5
O5' C5' C4' 106.5 109.5
O5' C5' H5'' 110.2 109.4
O5' C5' H5' 110.2 109.4
C5' C4' O4' 111.8 109.9
C5' C4' C3' 105.1 109.9
C4' C5' H5'' 110.2 109.5
C5' C4' H4' 109.2 109.8
C4' C5' H5' 110.2 109.5
O4' C4' C3' 106.2 107.3
C4' O4' C1' 108.6 106.9
O4' C4' H4' 113.8 109.9
C4' C3' O3' 103.9 110.5
C4' C3' C2' 104.6 104.2
C3' C4' H4' 110.2 110.0
C4' C3' H3' 109.9 110.6
O4' C1' C2' 105.2 103.5
O4' C1' N9 106.3 110.6
O4' C1' H7 109.7 110.6
O3' C3' C2' 115.7 110.4
O3' C3' H3' 112.9 110.4
C3' O3' HO3' 109.5 114.0
C3' C2' O2' 108.4 110.9
C3' C2' C1' 103.4 102.1
C2' C3' H3' 109.3 110.6
C3' C2' H2' 109.9 110.9
O2' C2' C1' 109.3 110.9
C2' O2' CM' 110.8 114.0
O2' C2' H2' 110.9 110.8
C2' C1' N9 107.6 110.6
C1' C2' H2' 114.5 110.9
C2' C1' H7 115.4 110.7
O2' CM' H11 109.5 109.5
O2' CM' H9 109.4 109.5
O2' CM' H10 109.5 109.5
C1' N9 C8 124.8 126.3
C1' N9 C4 126.6 126.3
N9 C1' H7 112.1 110.6
C8 N9 C4 108.6 107.4
N9 C8 N7 110.0 110.0
N9 C8 H8 125.0 124.9
N9 C4 C5 105.3 106.0
N9 C4 N3 133.5 134.9
C8 N7 C5 107.7 109.4
N7 C8 H8 125.0 125.0
N7 C5 C6 136.3 134.7
N7 C5 C4 108.4 107.1
C6 C5 C4 115.3 118.2
C5 C6 N6 118.2 120.7
C5 C6 N1 120.1 118.5
C5 C4 N3 121.1 119.1
N6 C6 N1 121.7 120.8
C6 N6 H61 109.5 120.0
C6 N6 H62 109.5 120.0
C6 N1 C2 122.9 121.2
N1 C2 N3 119.0 122.5
N1 C2 H2 120.5 118.8
C2 N3 C4 121.6 120.6
N3 C2 H2 120.5 118.8
H5'' C5' H5' 109.4 109.5
H11 CM' H9 109.5 109.5
H11 CM' H10 109.5 109.4
H9 CM' H10 109.5 109.5
H61 N6 H62 109.4 120.0
P OP3 HOP3 109.5 114.0

Torsion Angles for 6NW

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P SP1 O5' 242.2 240.0
OP2 P SP1 OP3 124.7 120.0
SP1 P O5' C5' 294.6 295.0
O5' P SP1 OP3 242.5 240.0
SP1 P OP3 HOP3 123.7 300.0
SP1 P OP2 O5' 114.5 120.0
OP2 P SP1 H1 360.0 60.0
SP1 P OP2 OP3 225.8 240.0
OP2 P O5' C5' 48.7 55.0
O5' P OP2 OP3 111.3 120.0
OP2 P OP3 HOP3 360.0 180.0
SP1 P O5' OP2 245.9 240.0
O5' P SP1 H1 117.8 180.0
SP1 P O5' OP3 131.1 120.0
OP2 P O5' OP3 245.2 240.0
P O5' C5' C4' 190.6 180.0
P O5' C5' H5'' 310.2 300.0
P O5' C5' H5' 71.1 60.0
O5' P OP3 HOP3 242.9 60.0
C5' O5' P OP3 163.6 175.0
O5' C5' C4' O4' 50.3 66.4
O5' C5' C4' C3' 165.2 184.3
C4' C5' O5' H5'' 240.5 240.0
O5' C5' C4' H4' 283.4 305.5
C4' C5' O5' H5' 119.5 120.1
H5'' C5' O5' H5' 239.1 240.1
O5' C5' C4' H5'' 119.6 120.0
O5' C5' C4' H5' 240.4 240.0
O4' C4' C5' C3' 245.1 242.2
C5' C4' O4' C1' 113.3 146.0
O4' C4' C5' H4' 126.9 121.0
C5' C4' C3' O3' 101.7 119.9
C5' C4' C3' C2' 223.4 238.5
C3' C4' C5' H4' 241.8 238.8
C5' C4' C3' H3' 340.6 357.3
H5'' C5' C4' H5' 120.9 120.0
C5' C4' O4' C3' 114.2 119.4
O4' C4' C5' H5'' 290.8 306.5
C5' C4' O4' H4' 235.6 239.0
O4' C4' C5' H5' 169.9 186.5
O4' C4' C3' O3' 220.4 239.3
O4' C4' C3' C2' 342.1 357.9
C3' C4' O4' H4' 121.4 119.6
O4' C4' C3' H3' 99.3 116.8
C4' O4' C1' C2' 23.8 319.9
C4' O4' C1' N9 269.8 201.4
C4' O4' C1' H7 148.4 78.5
C5' C4' C3' O4' 241.3 240.6
C3' C4' C5' H5'' 45.6 64.3
C5' C4' C3' H4' 117.6 121.1
C3' C4' C5' H5' 284.7 304.3
C3' C4' O4' C1' 359.1 26.6
O4' C4' C3' H4' 236.3 240.5
O3' C3' C4' C2' 238.3 241.4
O3' C3' C4' H3' 121.1 122.5
C4' C3' O3' HO3' 180.0 298.5
C4' C3' C2' O2' 277.6 221.0
C4' C3' C2' C1' 33.6 339.1
C2' C3' C4' H3' 242.8 241.2
C4' C3' C2' H2' 156.2 97.4
C1' O4' C4' C3' 359.1 26.6
C1' O4' C4' H4' 237.7 266.9
C3' C2' C1' O4' 327.2 37.0
O2' C2' C1' O4' 82.5 155.2
C2' C1' O4' N9 113.9 118.5
O4' C1' C2' H2' 207.7 278.8
C2' C1' O4' H7 235.3 241.4
O4' C1' N9 C8 19.3 23.6
O4' C1' N9 C4 198.7 203.2
N9 C1' O4' H7 121.4 123.0
C4' C3' O3' C2' 114.0 114.7
O3' C3' C4' H4' 344.1 358.8
C4' C3' O3' H3' 241.0 237.4
O3' C3' C2' O2' 31.2 339.6
O3' C3' C2' C1' 147.2 97.8
C2' C3' O3' H3' 127.0 122.6
O3' C3' C2' H2' 269.8 216.0
C4' C3' C2' O3' 246.4 241.3
C2' C3' C4' H4' 105.8 117.5
C4' C3' C2' H3' 117.6 118.8
O4' C1' C2' C3' 327.2 37.0
O3' C3' C2' H3' 231.2 237.5
C2' C3' O3' HO3' 66.0 183.8
O2' C2' C3' C1' 244.0 241.8
C3' C2' O2' CM' 194.5 268.5
O2' C2' C3' H2' 121.4 123.6
C3' C2' C1' N9 80.3 155.5
C1' C2' C3' H2' 237.4 241.8
C3' C2' C1' H7 206.2 278.5
O4' C1' C2' O2' 82.5 155.2
C3' C2' O2' C1' 112.1 112.7
O2' C2' C3' H3' 160.0 102.2
C3' C2' O2' H2' 239.3 236.3
O2' C2' C1' N9 195.6 273.7
C1' C2' O2' H2' 127.2 123.7
O2' C2' C1' H7 321.5 36.7
C2' O2' CM' H11 180.0 299.9
C2' O2' CM' H9 300.0 60.0
C2' O2' CM' H10 60.0 180.0
O4' C1' C2' N9 247.0 241.5
O4' C1' C2' H7 121.1 118.5
C3' C2' C1' O2' 244.7 241.8
C1' C2' C3' H3' 276.0 220.3
C3' C2' C1' H2' 119.5 118.2
C1' C2' O2' CM' 82.4 155.9
O2' C2' C1' H2' 234.9 236.4
C2' C1' N9 C8 267.0 269.5
C2' C1' N9 C4 86.4 89.2
N9 C1' C2' H7 234.1 237.0
CM' O2' C2' C1' 82.4 155.9
CM' O2' C2' H2' 315.2 32.2
H11 CM' O2' H9 240.0 239.9
H11 CM' O2' H10 120.0 120.0
H9 CM' O2' H10 240.0 240.0
O4' C1' N9 C2' 112.3 114.1
O4' C1' N9 H7 240.1 237.0
N9 C1' C2' H2' 320.7 37.3
C2' C1' N9 H7 127.8 123.0
C8 N9 C1' C4 180.6 180.3
C1' N9 C8 N7 179.4 180.0
C1' N9 C8 H8 359.3 360.0
C1' N9 C4 C5 180.6 179.9
C1' N9 C4 N3 0.6 0.8
C1' N9 C8 C4 179.5 179.7
C8 N9 C1' H7 139.2 146.5
C8 N9 C4 C5 0.0 359.6
C8 N9 C4 N3 180.1 180.5
N9 C8 N7 C5 0.1 360.0
N7 C8 N9 H8 180.0 180.0
C1' N9 C4 C8 180.5 180.3
C4 N9 C1' H7 318.6 326.2
C4 N9 C8 N7 359.9 0.3
C4 N9 C8 H8 179.9 180.2
N7 C5 C4 N9 0.0 0.4
C6 C5 C4 N9 179.8 180.2
C5 C4 N9 N3 180.0 179.1
C2 N3 C4 N9 180.1 179.6
N7 C8 N9 C4 359.9 0.3
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 180.2 180.0
C8 N7 C5 C4 359.9 359.8
N9 C4 C5 N7 0.0 0.4
C5 N7 C8 H8 180.2 180.0
C6 C5 N7 C4 180.3 180.2
N7 C5 C6 N6 359.6 0.1
N7 C5 C6 N1 180.0 180.0
N7 C5 C4 N3 180.0 179.6
N9 C4 C5 C6 179.8 180.2
N7 C5 C6 C4 179.7 179.8
C6 C5 C4 N3 359.8 359.5
N6 C6 C5 N1 179.6 180.0
C5 C6 N6 H61 180.4 0.0
C5 C6 N6 H62 300.4 180.0
C5 C6 N1 C2 359.7 360.0
N9 C4 C5 N3 180.0 180.7
N7 C5 C4 C6 180.3 180.2
C4 C5 C6 N6 180.0 180.3
C4 C5 C6 N1 0.4 0.2
C2 N3 C4 C5 0.1 0.6
N6 C6 C5 C4 180.0 180.3
C5 C6 N6 N1 180.4 180.0
N6 C6 N1 C2 180.1 180.0
H61 N6 C6 H62 240.0 180.0
N1 C6 C5 C4 0.4 0.2
C5 C6 N1 N6 179.6 180.0
N1 C6 N6 H61 0.0 180.0
N1 C6 N6 H62 120.0 0.0
C6 N1 C2 N3 0.2 0.0
C6 N1 C2 H2 180.2 180.0
N1 C2 N3 C4 360.0 359.7
N3 C2 N1 H2 180.0 180.0
N9 C4 N3 C2 180.1 179.6
C5 C4 N3 C2 0.1 0.6
N1 C2 N3 H2 180.0 180.0
N9 C4 N3 C5 180.0 179.0
C4 N3 C2 H2 180.0 179.7
H1 SP1 P OP2 360.0 60.0
H1 SP1 P O5' 117.8 180.0
H1 SP1 P OP3 235.3 300.0
O5' C5' H5'' C4' 242.7 240.0
O5' C5' H5'' H5' 121.4 119.9
H5'' C5' C4' O4' 290.8 306.5
H5'' C5' C4' C3' 45.6 64.3
H5'' C5' C4' H4' 163.8 185.5
C4' C5' H5'' H5' 238.7 239.9
C5' C4' H4' O4' 125.8 121.0
C5' C4' H4' C3' 245.0 238.9
H4' C4' C5' H5'' 163.8 185.5
H4' C4' C5' H5' 43.0 65.5
O4' C4' H4' C3' 119.2 118.0
H4' C4' O4' C1' 237.7 266.9
H4' C4' C3' O3' 344.1 358.8
H4' C4' C3' C2' 105.8 117.5
H4' C4' C3' H3' 223.0 236.3
C4' C3' H3' O3' 115.5 122.6
C4' C3' H3' C2' 245.8 245.1
H3' C3' C4' H4' 223.0 236.3
O3' C3' H3' C2' 130.3 122.6
H3' C3' O3' HO3' 299.0 61.1
H3' C3' C2' O2' 160.0 102.2
H3' C3' C2' C1' 276.0 220.3
H3' C3' C2' H2' 38.6 338.6
HO3' O3' C3' C2' 66.0 183.8
HO3' O3' C3' H3' 299.0 61.1
C3' C2' H2' O2' 119.9 123.7
C3' C2' H2' C1' 244.2 247.3
H2' C2' C3' H3' 38.6 338.6
O2' C2' H2' C1' 124.3 123.6
H2' C2' O2' CM' 315.2 32.2
H2' C2' C1' N9 320.7 37.3
H2' C2' C1' H7 86.6 160.3
O4' C1' H7 C2' 241.4 245.9
O4' C1' H7 N9 117.9 122.9
C2' C1' H7 N9 236.5 237.0
H7 C1' C2' H2' 86.6 160.3
H7 C1' N9 C8 139.2 146.5
H7 C1' N9 C4 318.6 326.2
O2' CM' H11 H9 120.0 120.1
O2' CM' H11 H10 240.0 240.0
H9 CM' H11 H10 120.0 120.0
O2' CM' H9 H11 240.0 239.9
O2' CM' H9 H10 120.0 120.0
H11 CM' H9 H10 240.0 240.0
O2' CM' H10 H11 120.0 120.0
O2' CM' H10 H9 240.0 240.0
H11 CM' H10 H9 120.0 120.0
H8 C8 N9 C4 179.9 180.2
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 180.2 180.0
H61 N6 C6 N1 0.0 180.0
C6 N6 H61 H62 120.0 180.0
H62 N6 C6 N1 120.0 0.0
C6 N6 H62 H61 240.0 180.0
N1 C2 H2 N3 180.0 180.0
H2 C2 N3 C4 180.0 179.7
O5' C5' H5' C4' 117.3 120.1
O5' C5' H5' H5'' 238.6 240.1
H5' C5' C4' O4' 169.9 186.5
H5' C5' C4' C3' 284.7 304.3
C4' C5' H5' H5'' 121.3 120.0
H5' C5' C4' H4' 43.0 65.5
SP1 P OP3 OP2 123.7 120.0
SP1 P OP3 O5' 240.8 240.0
OP3 P SP1 H1 235.3 300.0
OP2 P OP3 O5' 117.1 120.0
OP3 P O5' C5' 163.6 175.0