Atom Nomenclature for 6NW

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 6NW

Atom Name (V3) Atom Name (V2)
P P1
SP1 S1
OP2 O1
O5' O2
C5' C1
C4' C2
O4' O3
C3' C3
O3' O4
C2' C4
O2' O5
C1' C5
CM' C6
N9 N1
C8 C7
N7 N2
C5 C8
C6 C9
N6 N3
N1 N4
C2 C10
N3 N5
C4 C11
H1 H1
H5'' H2
H4' H3
H3' H4
HO3' H5
H2' H6
H7 H7
H11 H8
H9 H9
H10 H10
H8 H11
H61 H12
H62 H13
H2 H14
H5' H5'
OP3 OP3
HOP3 HOP3