PDB Chemical Component 6NV

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 6NV

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C25 C23 1.622 1.530
C25 C26 1.579 1.530
C25 C27 1.531 1.530
C23 O24 1.431 1.429
C23 C15 1.548 1.530
C27 O28 1.431 1.429
C16 C15 1.528 1.531
C16 C17 1.421 1.507
C18 C17 1.399 1.382
C18 C19 1.390 1.383
C15 N14 1.469 1.465
C17 C22 1.403 1.383
C19 C20 1.388 1.383
C22 C21 1.396 1.382
C20 C21 1.392 1.382
N14 C12 1.347 1.347
O13 C12 1.228 1.213
C12 C2 1.523 1.507
C2 C3 1.501 1.531
C2 N1 1.475 1.465
C3 C4 1.389 1.507
C5 C4 1.394 1.382
C5 C6 1.390 1.381
C4 C11 1.393 1.383
C6 C7 1.393 1.388
N1 C44 1.350 1.348
O45 C44 1.229 1.213
C44 C42 1.552 1.506
C11 C10 1.385 1.381
C7 C10 1.397 1.387
C7 O8 1.369 1.359
O8 C9 1.442 1.428
C43 C42 1.556 1.531
C42 N41 1.494 1.465
N41 C39 1.365 1.348
O40 C39 1.231 1.216
C39 C38 1.360 1.473
C38 C37 1.400 1.380
C38 C30 1.345 1.459
C37 C36 1.355 1.464
C30 C29 1.539 1.507
C30 C31 1.337 1.362
C36 C31 1.337 1.479
C36 C35 1.335 1.354
C31 C32 1.343 1.471
C35 C34 1.387 1.511
C32 C33 1.393 1.328
C34 C33 1.386 1.508
N1 H1 1.000 0.970
C5 H2 1.080 1.080
C6 H3 1.080 1.080
C10 H4 1.080 1.080
C15 H5 1.100 1.089
C20 H6 1.080 1.080
C21 H7 1.080 1.080
C22 H8 1.080 1.079
C26 H9 1.100 1.091
C26 H10 1.100 1.090
C26 H11 1.100 1.090
C29 H12 1.100 1.090
C29 H13 1.100 1.091
C29 H14 1.100 1.090
C32 H15 1.080 1.080
C33 H16 1.080 1.080
C34 H17 1.100 1.091
C34 H18 1.101 1.091
C35 H19 1.080 1.080
C37 H20 1.080 1.080
N41 H21 1.000 0.970
C42 H22 1.100 1.090
C43 H23 1.100 1.090
C43 H24 1.100 1.089
C43 H25 1.100 1.091
C2 H26 1.100 1.090
C3 H27 1.100 1.090
C3 H28 1.100 1.089
C11 H29 1.080 1.079
C9 H30 1.100 1.091
C9 H31 1.100 1.090
C9 H32 1.100 1.090
N14 H33 1.000 0.970
C16 H34 1.100 1.089
C16 H35 1.100 1.090
C18 H36 1.080 1.080
C19 H37 1.080 1.080
C23 H38 1.100 1.090
O24 H39 0.949 0.966
C25 H40 1.100 1.090
C27 H41 1.100 1.090
C27 H42 1.100 1.090
O28 H43 0.950 0.967

Bond Angles for 6NV

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C25 C23 H38 105.5 109.5
C25 C26 H9 109.5 109.5
C25 C26 H10 109.5 109.5
C25 C26 H11 109.5 109.4
C25 C27 O28 105.7 109.5
C27 C25 H40 109.8 109.5
C25 C27 H41 110.4 109.5
C25 C27 H42 110.4 109.5
O24 C23 H38 107.7 109.5
C23 O24 H39 109.5 114.0
C23 C15 H5 110.1 109.5
O28 C27 H41 110.4 109.5
O28 C27 H42 110.4 109.4
C27 O28 H43 109.5 114.1
C16 C15 H5 110.3 109.5
C19 C18 H36 119.2 120.0
C18 C19 H37 120.0 120.0
C15 N14 C12 123.5 120.0
N14 C15 H5 111.2 109.5
C15 N14 H33 118.3 120.0
C17 C22 C21 120.3 120.0
C17 C22 H8 119.8 120.1
C19 C20 H6 120.3 120.0
C22 C21 H7 119.6 120.0
C21 C20 H6 120.3 120.0
C20 C21 H7 119.6 120.0
C12 C2 H26 108.5 109.5
C3 C2 H26 108.8 109.5
C2 C3 H27 111.1 109.4
C2 C3 H28 111.1 109.4
C2 N1 H1 120.0 120.0
C3 C4 C11 119.5 119.9
C5 C4 C11 120.2 120.1
C5 C6 C7 120.2 119.9
C6 C5 H2 120.2 120.0
C5 C6 H3 119.9 120.1
C4 C11 C10 120.0 120.0
C4 C11 H29 120.0 120.0
C6 C7 C10 119.8 119.9
C6 C7 O8 118.5 120.1
C7 C6 H3 119.9 120.0
N1 C44 C42 119.5 120.0
C44 N1 H1 120.0 120.0
C44 C42 H22 103.9 109.5
C11 C10 H4 120.0 120.0
C10 C7 O8 121.7 120.1
C7 C10 H4 120.0 120.0
C7 O8 C9 117.7 117.0
O8 C9 H30 109.5 109.5
O8 C9 H31 109.4 109.5
O8 C9 H32 109.4 109.5
C43 C42 H22 103.8 109.4
C42 N41 H21 115.7 120.0
C38 C37 H20 127.2 126.4
C30 C29 H12 109.5 109.5
C30 C29 H13 109.5 109.4
C30 C29 H14 109.5 109.5
C30 C31 C32 132.4 132.0
C36 C35 H19 119.6 120.5
C31 C32 C33 120.7 120.9
C31 C32 H15 119.7 119.5
C35 C34 H17 107.3 107.5
C35 C34 H18 107.3 107.5
C33 C32 H15 119.6 119.6
C32 C33 H16 120.7 120.0
C34 C33 H16 120.6 120.0
H9 C26 H10 109.4 109.5
H9 C26 H11 109.5 109.5
H10 C26 H11 109.5 109.5
H12 C29 H13 109.5 109.5
H12 C29 H14 109.5 109.5
H13 C29 H14 109.5 109.4
H17 C34 H18 109.5 107.1
H23 C43 H24 109.5 109.5
H23 C43 H25 109.5 109.5
H24 C43 H25 109.5 109.5
H27 C3 H28 109.5 109.5
H30 C9 H31 109.5 109.5
H30 C9 H32 109.5 109.5
H31 C9 H32 109.5 109.4
H34 C16 H35 109.5 109.5
H41 C27 H42 109.5 109.4

Torsion Angles for 6NV

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C23 C25 C26 H9 180.0 180.0
C23 C25 C26 H10 300.0 300.0
C23 C25 C26 H11 60.0 60.0
O24 C23 C25 H38 244.2 239.9
C25 C23 O24 H39 180.0 180.0
C25 C23 C15 H5 322.2 55.3
H9 C26 C25 H10 240.0 240.0
H9 C26 C25 H11 120.0 119.9
H10 C26 C25 H11 240.0 240.0
C27 C25 C23 H38 140.0 54.1
C27 C25 C26 H9 300.8 300.0
C27 C25 C26 H10 60.8 60.0
C27 C25 C26 H11 180.7 180.0
O28 C27 C25 H41 240.6 240.0
O28 C27 C25 H42 119.4 120.0
C25 C27 O28 H43 180.0 180.0
H41 C27 C25 H42 238.8 240.0
C25 C23 O24 H38 114.4 120.1
O24 C23 C15 H5 196.2 295.3
C16 C15 C23 H5 240.7 240.0
N14 C15 C23 H5 124.1 120.0
C23 C15 N14 H33 56.5 95.0
O28 C27 C25 H40 187.2 304.4
C25 C27 O28 H41 119.4 120.1
C25 C27 O28 H42 240.6 239.9
H41 C27 O28 H42 121.2 119.9
C23 C15 C16 H5 119.1 120.0
N14 C15 C16 H5 238.7 240.0
C16 C15 N14 H33 300.7 335.0
C17 C16 C15 H5 43.7 56.2
C16 C17 C22 H8 359.9 0.0
C18 C17 C22 H8 179.6 179.7
C18 C19 C20 H6 179.9 179.8
C23 C15 N14 H5 236.6 239.9
C16 C15 N14 H5 120.8 120.0
C17 C22 C21 H7 180.3 180.6
C21 C20 C19 H6 180.0 180.5
C19 C20 C21 H7 179.9 179.4
C17 C22 C21 H8 180.0 180.0
C22 C21 C20 H6 180.0 180.0
C20 C21 C22 H7 180.0 179.9
C17 C22 C21 C20 0.3 0.5
C19 C20 C21 H6 180.0 179.5
C22 C21 C20 H7 180.0 180.1
C12 N14 C15 H5 359.9 35.0
C15 N14 C12 H33 180.0 180.1
N14 C12 C2 H26 34.9 60.0
C15 N14 C12 O13 4.3 0.0
O13 C12 C2 H26 212.5 240.0
C15 N14 C12 C2 181.7 180.0
C3 C2 C12 H26 242.1 240.0
C12 C2 C3 H27 271.1 55.0
C12 C2 C3 H28 33.3 295.0
C12 C2 N1 H1 52.8 25.2
C12 C2 C3 H26 117.7 120.0
C3 C2 N1 H1 292.4 265.3
C2 C3 C4 C11 88.2 90.0
H27 C3 C2 H28 237.8 120.0
C44 N1 C2 H1 180.0 179.8
C5 C4 C3 C11 180.5 179.6
C3 C4 C11 C10 180.3 179.6
C3 C4 C11 H29 0.3 359.7
C3 C4 C5 C11 179.5 180.4
C5 C4 C11 C10 359.7 0.0
C5 C4 C11 H29 179.7 180.1
C6 C5 C4 C11 0.3 360.0
C5 C6 C7 C10 0.6 360.0
C5 C6 C7 O8 179.6 180.0
C7 C6 C5 H3 180.0 180.0
C4 C11 C10 H4 180.5 180.0
C7 C6 C5 H2 179.5 180.0
C5 C6 C7 H3 180.0 180.0
C10 C7 C6 O8 181.0 180.0
C6 C7 C10 H4 179.4 180.1
C6 C7 O8 C9 140.8 180.0
C2 N1 C44 H1 180.0 180.2
N1 C44 C42 H22 237.6 300.0
O45 C44 N1 H1 183.2 180.0
O45 C44 C42 H22 52.1 120.0
C42 C44 N1 H1 357.5 360.0
C43 C42 C44 H22 112.9 120.0
C44 C42 N41 H21 78.3 335.1
C4 C11 C10 H29 180.0 180.1
C11 C10 C7 O8 180.4 180.0
C7 C10 C11 H4 180.0 180.1
C4 C11 C10 C7 0.4 0.0
C6 C7 C10 O8 179.0 180.0
C10 C7 C6 H3 180.6 180.0
C11 C10 C7 H4 180.0 179.9
C10 C7 O8 C9 319.8 360.0
C6 C7 O8 C10 181.0 180.0
O8 C7 C6 H3 359.6 0.0
O8 C7 C10 H4 0.4 0.1
C7 O8 C9 H30 180.0 180.0
C7 O8 C9 H31 300.0 300.0
C7 O8 C9 H32 60.0 60.0
H30 C9 O8 H31 240.0 240.0
H30 C9 O8 H32 120.0 120.0
H31 C9 O8 H32 240.0 240.0
N1 C44 C42 C43 350.6 60.0
C44 C42 C43 H22 247.0 240.0
C43 C42 N41 H21 213.2 95.0
N1 C44 C42 N41 125.0 180.0
C39 C38 C37 H20 359.5 359.7
C38 C30 C29 H12 180.0 275.0
C38 C30 C29 H13 300.0 34.9
C38 C30 C29 H14 60.0 154.9
C37 C36 C35 H19 358.0 360.0
H12 C29 C30 H13 240.0 240.0
H12 C29 C30 H14 120.0 120.1
H13 C29 C30 H14 240.0 240.0
C31 C30 C29 H12 1.3 95.2
C31 C30 C29 H13 121.4 215.2
C31 C30 C29 H14 241.3 335.2
C30 C31 C32 C33 180.0 180.0
C30 C31 C32 H15 0.0 360.0
C36 C31 C32 H15 180.7 180.0
C36 C35 C34 H17 120.9 237.5
C36 C35 C34 H18 238.5 122.5
C33 C32 C31 H15 180.0 180.0
C31 C32 C33 H16 179.8 179.9
C35 C34 C33 H16 180.0 180.0
H17 C34 C35 H18 242.5 115.0
C31 C32 C33 H15 180.0 180.0
C34 C33 C32 H16 180.0 180.0
C34 C33 C32 H15 179.8 180.0
C32 C33 C34 H16 180.0 180.0
H1 N1 C44 C42 357.5 360.0
H2 C5 C4 C11 180.3 180.0
H2 C5 C6 C7 179.5 180.0
H2 C5 C6 H3 359.5 360.0
C5 C6 H3 C7 180.0 180.0
H3 C6 C5 H2 359.5 360.0
H3 C6 C7 C10 180.6 180.0
H3 C6 C7 O8 359.6 0.0
H4 C10 C7 O8 0.4 0.1
H5 C15 N14 C12 359.9 35.0
H5 C15 N14 H33 179.9 215.1
H6 C20 C21 H7 359.9 359.9
H7 C21 C20 H6 359.9 359.9
C17 C22 H8 C21 180.0 180.0
H8 C22 C21 H7 0.3 0.6
C25 C26 H9 H10 120.0 120.0
C25 C26 H9 H11 240.0 240.1
H10 C26 H9 H11 120.0 120.1
C25 C26 H10 H9 240.0 240.0
C25 C26 H10 H11 120.0 120.0
H9 C26 H10 H11 240.0 240.0
C25 C26 H11 H9 120.1 119.9
C25 C26 H11 H10 240.0 240.0
H9 C26 H11 H10 120.0 120.1
C30 C29 H12 H13 120.0 120.0
C30 C29 H12 H14 240.0 239.9
H13 C29 H12 H14 120.0 120.0
C30 C29 H13 H12 240.0 240.0
C30 C29 H13 H14 120.0 120.0
H12 C29 H13 H14 240.0 240.0
C30 C29 H14 H12 120.0 120.0
C30 C29 H14 H13 240.0 240.0
H12 C29 H14 H13 120.0 120.0
C31 C32 H15 C33 180.0 180.0
H15 C32 C33 H16 359.8 360.0
H16 C33 C32 H15 359.8 360.0
C35 C34 H17 H18 116.1 244.8
H17 C34 C33 H16 58.8 302.5
C35 C34 H18 H17 243.9 115.2
H18 C34 C33 H16 301.2 57.6
H19 C35 C34 H17 300.9 57.5
H19 C35 C34 H18 58.5 302.5
H22 C42 N41 H21 326.0 215.0
H23 C43 C42 H22 292.9 180.0
H24 C43 H23 H25 120.0 120.0
H24 C43 C42 H22 52.9 300.0
H23 C43 H24 H25 240.0 240.0
H25 C43 C42 H22 172.9 60.0
H23 C43 H25 H24 120.0 120.0
H26 C2 C3 H27 153.4 295.0
H26 C2 C3 H28 275.6 175.0
H26 C2 N1 H1 172.5 145.3
H27 C3 C2 H26 153.4 295.0
C2 C3 H27 H28 123.2 240.1
H27 C3 C4 C11 329.3 210.0
H28 C3 C2 H26 275.6 175.0
C2 C3 H28 H27 236.8 119.9
H28 C3 C4 C11 207.1 330.1
C4 C11 H29 C10 180.0 179.9
H29 C11 C10 H4 0.4 359.9
O8 C9 H30 H31 120.0 120.0
O8 C9 H30 H32 240.0 239.9
H31 C9 H30 H32 120.0 120.0
O8 C9 H31 H30 240.0 240.0
O8 C9 H31 H32 120.0 120.0
H30 C9 H31 H32 240.0 240.0
O8 C9 H32 H30 120.0 120.0
O8 C9 H32 H31 240.0 240.0
H30 C9 H32 H31 120.0 120.0
C15 N14 H33 C12 180.0 179.9
H33 N14 C15 H5 179.9 215.1
H34 C16 C15 H5 164.6 176.2
H35 C16 C15 H5 282.9 296.2
H36 C18 C19 H37 0.1 0.0
H37 C19 C18 H36 0.1 0.0
H37 C19 C20 H6 359.9 359.7
H38 C23 O24 H39 65.6 59.9
H38 C23 C15 H5 80.5 175.3
H39 O24 C23 H38 65.6 59.9
H40 C25 C23 H38 19.7 294.1
H40 C25 C26 H9 59.1 60.0
H40 C25 C26 H10 179.0 180.0
H40 C25 C26 H11 299.0 300.0
H40 C25 C27 O28 187.2 304.4
H40 C25 C27 H41 306.6 64.5
H40 C25 C27 H42 67.8 184.4
C25 C27 H41 O28 243.5 239.9
H41 C27 C25 H40 306.6 64.5
C25 C27 H41 H42 121.7 120.0
O28 C27 H41 H42 238.3 240.1
H41 C27 O28 H43 60.6 59.9
C25 C27 H42 O28 116.6 120.1
H42 C27 C25 H40 67.8 184.4
C25 C27 H42 H41 238.3 240.0
O28 C27 H42 H41 121.7 119.9
H42 C27 O28 H43 299.4 300.0
H43 O28 C27 H41 60.6 59.9
H43 O28 C27 H42 299.4 300.0