Atom Nomenclature for 6NL

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 6NL

Atom Name (V3) Atom Name (V2)
CAI C1
OAH O1
CAE C2
CAF C3
CAA C4
OAG O2
CAD C5
CAC C6
CAB C7
CAJ C8
CAK C9
CAM C10
CAL C11
OAN O3
CAO C12
CAT C13
CAP C14
CAQ C15
OAW O4
CAX C16
OAY O5
CAR C17
CAS C18
OAU O6
CAV C19
HAK H1
HAJ H2
HAI H3
HAA H4
HAG H5
HAD H6
HAC H7
HAL H8
HAO H9
HAN H10
HAM H11
HAT H12
HAP H13
HAY H14
HAZ H15
HAV H16
HAW H17
HAX H18