PDB Chemical Component 6MZ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 6MZ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C4 C5 1.389 1.406
C4 N9 1.372 1.372
C2 N3 1.341 1.316
C4 N3 1.350 1.329
C2 N1 1.346 1.321
C5 C6 1.442 1.404
N1 C6 1.360 1.329
C6 N6 1.357 1.384
N6 C9 1.361 1.464
C5 N7 1.390 1.354
N9 C8 1.372 1.363
N7 C8 1.311 1.301
O5' C5' 1.443 1.430
C1' H1' 1.100 1.091
C9 H9C1 1.100 1.091
C9 H9C2 1.100 1.091
C5' H5'1 1.100 1.090
C5' H5'2 1.100 1.090
C4' H4' 1.100 1.090
C3' H3' 1.100 1.090
C2' H2' 1.101 1.090
O2' HA 0.950 0.967
O3' HB 0.950 0.968
O3P H3P 0.950 0.967
C5' C4' 1.508 1.529
C4' O4' 1.449 1.437
N9 C1' 1.459 1.465
O4' C1' 1.413 1.444
C1' C2' 1.526 1.550
C2' O2' 1.414 1.428
C4' C3' 1.519 1.541
C2' C3' 1.520 1.551
C3' O3' 1.425 1.428
O1P P 1.500 1.610
O2P P 1.486 1.480
O5' P 1.602 1.610
P O3P 1.601 1.610
C2 H2 1.080 1.080
O1P H1P 0.950 0.967
C8 H8 1.080 1.080
N6 H6 1.000 0.970
C9 H9 1.100 1.090

Bond Angles for 6MZ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C5 C4 N9 105.9 106.0
C5 C4 N3 127.2 119.1
C4 C5 C6 116.5 118.2
C4 C5 N7 110.4 107.1
N9 C4 N3 127.0 134.9
C4 N9 C8 106.0 107.4
C4 N9 C1' 125.8 126.3
C2 N3 C4 111.0 120.6
N3 C2 N1 129.2 122.5
N3 C2 H2 115.4 118.8
C2 N1 C6 118.9 121.2
N1 C2 H2 115.4 118.7
C5 C6 N1 117.2 118.5
C5 C6 N6 125.9 120.8
C6 C5 N7 133.2 134.7
N1 C6 N6 116.9 120.7
C6 N6 C9 124.8 120.0
C6 N6 H6 105.5 120.0
N6 C9 H9C1 109.5 109.5
N6 C9 H9C2 109.4 109.5
C9 N6 H6 105.5 120.0
N6 C9 H9 109.5 109.5
C5 N7 C8 104.0 109.5
N9 C8 N7 113.8 110.0
C8 N9 C1' 128.2 126.3
N9 C8 H8 123.1 125.0
N7 C8 H8 123.1 125.0
O5' C5' H5'1 109.1 109.4
O5' C5' H5'2 109.1 109.5
O5' C5' C4' 111.0 109.5
C5' O5' P 120.5 123.0
N9 C1' H1' 109.6 110.5
O4' C1' H1' 110.3 110.6
C2' C1' H1' 108.7 110.7
H9C1 C9 H9C2 109.5 109.4
H9C1 C9 H9 109.5 109.5
H9C2 C9 H9 109.5 109.4
H5'1 C5' H5'2 109.5 109.5
C4' C5' H5'1 109.1 109.5
C4' C5' H5'2 109.1 109.5
C5' C4' H4' 108.8 109.8
O4' C4' H4' 109.5 109.9
C3' C4' H4' 108.6 109.9
C4' C3' H3' 108.8 110.5
C2' C3' H3' 108.7 110.5
O3' C3' H3' 110.1 110.6
C1' C2' H2' 110.0 110.9
O2' C2' H2' 111.7 110.8
C3' C2' H2' 110.1 111.0
C2' O2' HA 109.5 114.0
C3' O3' HB 109.5 114.0
P O3P H3P 109.5 114.0
C5' C4' O4' 109.2 109.9
C5' C4' C3' 116.0 109.9
C4' O4' C1' 109.9 107.0
O4' C4' C3' 104.6 107.5
N9 C1' O4' 108.0 110.6
N9 C1' C2' 113.2 110.6
O4' C1' C2' 107.1 103.5
C1' C2' O2' 110.0 110.9
C1' C2' C3' 100.8 102.1
O2' C2' C3' 113.8 110.9
C4' C3' C2' 102.2 104.0
C4' C3' O3' 111.8 110.5
C2' C3' O3' 114.8 110.6
O1P P O2P 120.9 109.5
O1P P O5' 108.4 109.5
O1P P O3P 105.6 109.4
P O1P H1P 109.5 114.0
O2P P O5' 108.7 109.5
O2P P O3P 108.0 109.5
O5' P O3P 103.9 109.5

Torsion Angles for 6MZ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N9 C4 C5 N3 180.3 180.0
C5 C4 N9 C8 359.7 0.0
C5 C4 N9 C1' 179.6 180.0
C2 N3 C4 C5 0.2 360.0
C4 C5 C6 N1 360.0 360.0
C4 C5 C6 N6 179.9 179.9
C6 C5 C4 N7 179.9 180.1
C4 C5 N7 C8 359.8 0.0
C5 C4 N9 N3 179.7 180.0
N9 C4 C5 C6 180.2 180.0
N9 C4 C5 N7 0.3 360.0
C2 N3 C4 N9 179.8 180.0
C4 N9 C8 N7 0.2 360.0
C8 N9 C4 C1' 180.1 180.0
C4 N9 C8 H8 180.2 180.0
C4 N9 C1' H1' 309.9 326.4
C4 N9 C1' O4' 189.7 203.5
C4 N9 C1' C2' 71.4 89.4
C5 C4 N3 C2 0.2 360.0
N9 C4 N3 C2 179.8 180.0
N3 C2 N1 C6 0.1 0.0
N1 C2 N3 H2 180.0 180.3
C5 C4 N3 N9 180.3 180.0
N3 C4 C5 C6 359.9 0.0
N3 C4 C5 N7 180.0 180.0
N3 C4 N9 C8 180.0 180.0
N3 C4 N9 C1' 359.9 0.0
C4 N3 C2 N1 359.8 360.0
C4 N3 C2 H2 179.8 179.7
N1 C2 N3 C4 359.8 360.0
N3 C2 N1 H2 180.0 179.7
C5 C6 N1 C2 0.0 360.0
C2 N1 C6 N6 180.0 180.1
C6 C5 C4 N9 180.2 180.0
C6 C5 C4 N3 359.9 0.0
C4 C5 C6 N7 180.1 179.9
C2 N1 C6 C5 0.0 360.0
N1 C6 C5 N6 180.0 180.1
C5 C6 N6 C9 359.9 180.0
C5 C6 N6 H6 122.0 0.1
C6 C5 N7 C8 179.9 179.9
C6 N1 C2 H2 180.1 180.3
C5 C6 N1 N6 180.0 179.9
N1 C6 C5 N7 179.8 180.1
N1 C6 N6 C9 179.9 359.9
N1 C6 N6 H6 302.0 180.0
C5 C6 N6 N1 180.0 180.1
N6 C6 C5 N7 359.8 360.0
C6 N6 C9 H9C1 180.0 300.1
C6 N6 C9 H9C2 300.0 60.0
C9 N6 C6 H6 237.9 179.9
C6 N6 C9 H9 60.0 180.0
C6 N6 C9 H6 122.1 180.1
H9C1 C9 N6 H9C2 240.0 240.1
H9C1 C9 N6 H9 120.0 120.1
H9C2 C9 N6 H9 240.0 240.0
N7 C5 C4 N9 0.3 360.0
N7 C5 C4 N3 180.0 180.0
C4 C5 N7 C6 179.9 180.1
N7 C5 C6 N1 179.8 180.1
N7 C5 C6 N6 359.8 360.0
N9 C8 N7 C5 360.0 0.0
C5 N7 C8 H8 180.0 179.9
C8 N9 C4 N3 180.0 180.0
C4 N9 C8 C1' 179.9 180.0
C5 N7 C8 N9 360.0 0.0
N7 C8 N9 H8 180.0 179.9
C8 N9 C1' H1' 129.9 146.4
C8 N9 C1' O4' 9.7 23.5
C8 N9 C1' C2' 251.4 269.4
N7 C8 N9 C1' 180.3 180.0
N9 C8 N7 H8 180.0 180.1
H5'1 C5' O5' H5'2 240.5 240.0
C4' C5' O5' H5'1 239.8 240.0
C4' C5' O5' H5'2 120.2 120.1
O5' C5' C4' H4' 171.4 305.7
O5' C5' C4' O4' 290.9 66.7
O5' C5' C4' C3' 48.7 184.7
O1P P O5' C5' 42.2 295.0
O2P P O5' C5' 175.3 55.0
C5' O5' P O3P 290.2 175.0
H1' C1' C2' H2' 94.6 160.3
C4' O4' C1' H1' 127.3 78.6
N9 C1' H1' O4' 241.2 237.1
N9 C1' H1' C2' 124.1 123.0
O4' C1' H1' C2' 242.9 245.9
H1' C1' C2' O2' 331.2 36.7
H1' C1' C2' C3' 210.8 278.6
N6 C9 H9C1 H9C2 120.0 120.0
H9C1 C9 N6 H6 57.9 120.0
N6 C9 H9C1 H9 240.0 239.9
H9C2 C9 H9C1 H9 120.0 119.9
N6 C9 H9C2 H9C1 240.0 240.0
H9C2 C9 N6 H6 177.9 239.9
N6 C9 H9C2 H9 120.0 120.1
H9C1 C9 H9C2 H9 240.0 240.1
O5' C5' H5'1 H5'2 119.3 120.0
O5' C5' H5'1 C4' 238.6 240.0
H5'1 C5' O5' P 302.2 300.0
C4' C5' H5'1 H5'2 240.7 240.0
H5'1 C5' C4' H4' 51.2 185.7
H5'1 C5' C4' O4' 170.7 306.7
H5'1 C5' C4' C3' 288.5 64.8
O5' C5' H5'2 H5'1 240.7 240.0
O5' C5' H5'2 C4' 121.4 120.1
H5'2 C5' O5' P 61.8 60.0
C4' C5' H5'2 H5'1 119.3 120.0
H5'2 C5' C4' H4' 291.6 65.8
H5'2 C5' C4' O4' 51.1 186.7
H5'2 C5' C4' C3' 168.9 304.8
H4' C4' C5' H5'1 51.2 185.7
H4' C4' C5' H5'2 291.6 65.8
H4' C4' C3' H3' 197.6 236.2
C5' C4' H4' O4' 119.3 121.0
C5' C4' H4' C3' 233.0 239.0
H4' C4' O4' C1' 259.5 266.9
O4' C4' H4' C3' 113.7 118.0
H4' C4' C3' C2' 82.7 117.6
H4' C4' C3' O3' 319.4 358.9
H3' C3' C4' H4' 197.6 236.2
H3' C3' C2' H2' 39.6 338.6
H3' C3' O3' HB 301.0 302.6
C5' C4' C3' H3' 320.4 357.2
O4' C4' C3' H3' 80.7 116.7
C1' C2' C3' H3' 283.4 220.4
O2' C2' C3' H3' 165.8 102.2
C4' C3' H3' C2' 249.4 245.4
C4' C3' H3' O3' 122.9 122.6
C2' C3' H3' O3' 233.4 237.2
H2' C2' C1' H1' 94.6 160.3
H2' C2' C3' H3' 39.6 338.6
H2' C2' O2' HA 57.6 56.4
N9 C1' C2' H2' 332.6 37.3
O4' C1' C2' H2' 213.7 278.8
C1' C2' H2' O2' 237.6 236.4
C1' C2' H2' C3' 110.2 112.7
O2' C2' H2' C3' 232.6 236.3
C4' C3' C2' H2' 154.5 97.2
H2' C2' C3' O3' 275.8 215.8
HA O2' C2' H2' 57.6 56.4
C1' C2' O2' HA 180.0 180.0
HA O2' C2' C3' 292.2 292.7
HB O3' C3' H3' 301.0 302.6
C4' C3' O3' HB 180.0 180.0
C2' C3' O3' HB 64.1 65.4
O1P P O3P H3P 130.6 60.0
O2P P O3P H3P 0.0 300.1
O5' P O3P H3P 244.7 180.0
O5' C5' C4' H5'1 120.2 120.0
O5' C5' C4' H5'2 239.8 240.0
C4' C5' O5' P 182.0 180.0
H5'1 C5' C4' H5'2 119.6 120.0
O4' C4' C5' H4' 119.5 121.0
C3' C4' C5' H4' 237.3 239.0
C5' C4' O4' C1' 140.5 146.0
O4' C4' C5' C3' 242.2 242.0
C5' C4' C3' C2' 205.5 238.6
C5' C4' C3' O3' 82.2 119.9
O4' C4' C5' H5'1 170.7 306.7
O4' C4' C5' H5'2 51.1 186.7
C5' C4' O4' H4' 241.0 239.1
C3' C4' O4' H4' 116.2 119.5
C5' C4' O4' C3' 124.7 119.5
N9 C1' O4' C4' 247.1 201.4
C4' O4' C1' C2' 9.2 320.0
O4' C4' C3' C2' 325.8 358.1
O4' C4' C3' O3' 202.5 239.4
C1' N9 C4 N3 359.9 0.0
C4 N9 C1' C8 180.1 180.0
C1' N9 C8 N7 180.3 180.0
C1' N9 C8 H8 0.3 0.0
O4' C1' N9 H1' 239.8 237.1
C2' C1' N9 H1' 121.5 123.0
C4' O4' C1' N9 247.1 201.4
O4' C1' N9 C2' 118.3 114.1
N9 C1' C2' O2' 209.1 273.8
N9 C1' C2' C3' 88.8 155.6
N9 C1' O4' H1' 119.8 122.8
C2' C1' O4' H1' 241.9 241.4
C1' O4' C4' H4' 259.5 266.9
C1' O4' C4' C3' 15.8 26.4
N9 C1' O4' C2' 237.9 241.5
O4' C1' C2' O2' 90.3 155.3
O4' C1' C2' C3' 329.9 37.1
N9 C1' C2' H1' 238.0 237.1
O4' C1' C2' H1' 119.1 118.5
O2' C2' C1' H2' 236.6 236.5
C3' C2' C1' H2' 116.2 118.3
N9 C1' C2' O4' 118.9 118.5
O2' C2' C1' C3' 120.4 118.2
C4' C3' C2' C1' 38.3 339.0
C1' C2' C3' O3' 159.6 97.6
O2' C2' C1' H1' 331.2 36.7
C1' C2' O2' H2' 122.4 123.6
C3' C2' O2' H2' 234.6 236.3
C1' C2' O2' C3' 247.8 247.3
C4' C3' C2' O2' 280.7 220.8
O2' C2' C3' O3' 42.0 339.4
C3' C4' C5' H5'1 288.5 64.8
C3' C4' C5' H5'2 168.9 304.8
C5' C4' C3' H4' 122.8 120.9
O4' C4' C3' H4' 243.1 240.5
C2' C3' C4' H3' 245.1 241.4
O3' C3' C4' H3' 121.8 122.7
C5' C4' C3' O4' 239.7 240.5
C3' C4' O4' C1' 15.8 26.4
C1' C2' C3' C4' 38.3 339.0
O2' C2' C3' C4' 280.7 220.8
C2' C3' C4' O3' 123.3 118.7
C3' C2' C1' H1' 210.8 278.6
C2' C3' C4' H4' 82.7 117.6
C4' C3' C2' H3' 114.9 118.6
O3' C3' C2' H3' 236.2 237.2
C1' C2' C3' H2' 243.9 241.8
O2' C2' C3' H2' 126.2 123.6
C3' C2' O2' HA 292.2 292.7
C1' C2' C3' O2' 117.6 118.2
C4' C3' C2' O3' 238.7 241.4
O3' C3' C4' H4' 319.4 358.9
C4' C3' O3' H3' 239.0 237.4
C2' C3' O3' H3' 123.1 122.7
O3' C3' C2' H2' 275.8 215.8
C4' C3' O3' C2' 115.9 114.6
C5' O5' P O1P 42.2 295.0
O2P P O1P O5' 233.7 240.0
O2P P O1P O3P 122.8 120.0
O5' P O1P O3P 249.1 240.0
C5' O5' P O2P 175.3 55.0
O1P P O2P O5' 126.2 120.0
O1P P O2P O3P 238.4 240.1
O2P P O1P H1P 0.0 180.0
O5' P O2P O3P 112.2 120.0
P O5' C5' H5'1 302.2 300.0
P O5' C5' H5'2 61.8 60.0
P O5' C5' C4' 182.0 180.0
O1P P O5' O2P 226.9 240.0
O1P P O5' O3P 112.0 119.9
O5' P O1P H1P 126.3 300.1
O2P P O5' O3P 245.1 240.0
O1P P O3P O2P 130.6 120.0
O1P P O3P O5' 245.9 240.0
O3P P O1P H1P 237.2 60.0
O2P P O3P O5' 115.3 120.1
H2 C2 N3 C4 179.8 179.7
N3 C2 H2 N1 180.0 180.3
H2 C2 N1 C6 180.1 180.3
H1P O1P P O2P 0.0 180.0
H1P O1P P O5' 126.3 300.1
H1P O1P P O3P 237.2 60.0
N9 C8 H8 N7 180.0 179.9
H8 C8 N9 C1' 0.3 0.0
C6 N6 H6 C9 226.2 179.9
H6 N6 C9 H9C1 57.9 120.0
H6 N6 C9 H9C2 177.9 239.9
H6 N6 C9 H9 297.9 359.9
N6 C9 H9 H9C1 120.0 120.1
N6 C9 H9 H9C2 240.0 240.0
H9 C9 N6 H6 297.9 359.9
H9C1 C9 H9 H9C2 120.0 119.9