Atom Nomenclature for 6MZ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 6MZ

Atom Name (V3) Atom Name (V2)
C2 C2
C4 C4
C5 C5
O1P O1P
O2P O2P
N9 N9
N3 N3
N1 N1
C6 C6
N6 N6
C9 C9
N7 N7
C8 C8
O5' O5'
C5' C5'
C4' C4'
O4' O4'
C1' C1'
C2' C2'
O2' O2'
C3' C3'
O3' O3'
P P
O3P O3P
H2 H2
H1P H1P
H8 H8
H1' H1'
H9C1 H9C1
H9C2 H9C2
H5'1 H5'1
H5'2 H5'2
H4' H4'
H3' H3'
H2' H2'
HA HA
HB HB
H3P H3P
H6 H6
H9 H9