PDB Chemical Component 6MB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 6MB
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O01 |
C06 |
1.335 |
1.217 |
| O02 |
S01 |
1.603 |
1.421 |
| N04 |
C06 |
1.339 |
1.353 |
| N04 |
C07 |
1.405 |
1.363 |
| O03 |
S01 |
1.629 |
1.421 |
| C06 |
C01 |
1.431 |
1.474 |
| N05 |
C07 |
1.370 |
1.370 |
| S01 |
C11 |
1.756 |
1.762 |
| S01 |
N07 |
1.727 |
1.656 |
| C07 |
N03 |
1.370 |
1.310 |
| C01 |
N02 |
1.377 |
1.325 |
| C01 |
C02 |
1.423 |
1.415 |
| C11 |
C12 |
1.387 |
1.383 |
| C11 |
C10 |
1.380 |
1.383 |
| N07 |
C14 |
1.389 |
1.382 |
| N02 |
C04 |
1.324 |
1.318 |
| C12 |
C13 |
1.390 |
1.382 |
| C10 |
C09 |
1.389 |
1.381 |
| N03 |
C02 |
1.377 |
1.346 |
| C02 |
N01 |
1.398 |
1.333 |
| C13 |
C08 |
1.409 |
1.389 |
| C09 |
C08 |
1.396 |
1.389 |
| C04 |
C05 |
1.513 |
1.507 |
| C04 |
C03 |
1.443 |
1.390 |
| C08 |
N06 |
1.410 |
1.396 |
| C14 |
O04 |
1.378 |
1.343 |
| C14 |
C15 |
1.397 |
1.367 |
| C05 |
N06 |
1.446 |
1.465 |
| O04 |
N08 |
1.338 |
1.209 |
| N01 |
C03 |
1.312 |
1.319 |
| C17 |
C15 |
1.462 |
1.508 |
| C15 |
C16 |
1.441 |
1.408 |
| N08 |
C16 |
1.345 |
1.304 |
| C16 |
C18 |
1.482 |
1.507 |
| C03 |
H1 |
1.080 |
1.080 |
| C05 |
H2 |
1.100 |
1.090 |
| C05 |
H3 |
1.100 |
1.090 |
| N04 |
H4 |
1.000 |
0.970 |
| N05 |
H5 |
1.000 |
0.970 |
| N05 |
H6 |
1.000 |
0.970 |
| N06 |
H7 |
1.000 |
0.970 |
| C09 |
H8 |
1.080 |
1.080 |
| C10 |
H9 |
1.080 |
1.080 |
| C12 |
H10 |
1.080 |
1.080 |
| C13 |
H11 |
1.080 |
1.080 |
| N07 |
H12 |
1.000 |
0.970 |
| C17 |
H13 |
1.100 |
1.090 |
| C17 |
H14 |
1.100 |
1.090 |
| C17 |
H15 |
1.100 |
1.090 |
| C18 |
H16 |
1.100 |
1.090 |
| C18 |
H17 |
1.100 |
1.091 |
| C18 |
H18 |
1.099 |
1.090 |
Bond Angles for 6MB
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C07 |
N04 |
H4 |
122.0 |
119.8 |
| S01 |
N07 |
C14 |
127.9 |
120.0 |
| S01 |
N07 |
H12 |
104.7 |
120.0 |
| C02 |
C01 |
N02 |
123.8 |
120.2 |
| C01 |
N02 |
C04 |
116.8 |
119.6 |
| C01 |
C02 |
N01 |
118.1 |
119.3 |
| C11 |
C12 |
C13 |
122.1 |
120.0 |
| C11 |
C12 |
H10 |
118.9 |
120.0 |
| C11 |
C10 |
H9 |
118.7 |
120.0 |
| N07 |
C14 |
O04 |
116.7 |
126.9 |
| N07 |
C14 |
C15 |
134.8 |
126.9 |
| C14 |
N07 |
H12 |
104.7 |
120.0 |
| N02 |
C04 |
C05 |
121.1 |
119.7 |
| C13 |
C12 |
H10 |
119.0 |
120.0 |
| C12 |
C13 |
H11 |
119.4 |
120.0 |
| C10 |
C09 |
H8 |
119.4 |
120.0 |
| C02 |
N01 |
C03 |
116.8 |
119.6 |
| C04 |
C05 |
N06 |
115.9 |
109.5 |
| C04 |
C05 |
H2 |
107.8 |
109.5 |
| C04 |
C05 |
H3 |
107.8 |
109.4 |
| C04 |
C03 |
H1 |
117.6 |
119.7 |
| C08 |
N06 |
H7 |
105.4 |
120.1 |
| C15 |
C14 |
O04 |
108.4 |
106.2 |
| C14 |
O04 |
N08 |
109.8 |
111.4 |
| C14 |
C15 |
C16 |
103.8 |
104.0 |
| N06 |
C05 |
H2 |
107.9 |
109.5 |
| N06 |
C05 |
H3 |
107.8 |
109.5 |
| C05 |
N06 |
H7 |
105.4 |
119.9 |
| N01 |
C03 |
H1 |
117.6 |
119.6 |
| C15 |
C16 |
C18 |
128.5 |
126.7 |
| N08 |
C16 |
C18 |
122.1 |
126.8 |
| C16 |
C18 |
H16 |
109.5 |
109.5 |
| C16 |
C18 |
H17 |
109.5 |
109.5 |
| C16 |
C18 |
H18 |
109.5 |
109.5 |
| H2 |
C05 |
H3 |
109.4 |
109.4 |
| H5 |
N05 |
H6 |
120.0 |
119.9 |
| H13 |
C17 |
H14 |
109.5 |
109.5 |
| H13 |
C17 |
H15 |
109.5 |
109.5 |
| H14 |
C17 |
H15 |
109.5 |
109.5 |
| H16 |
C18 |
H17 |
109.5 |
109.5 |
| H16 |
C18 |
H18 |
109.5 |
109.5 |
| H17 |
C18 |
H18 |
109.5 |
109.4 |
Torsion Angles for 6MB
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O02 |
S01 |
N07 |
H12 |
328.3 |
131.5 |
| O03 |
S01 |
N07 |
H12 |
228.0 |
358.7 |
| N05 |
C07 |
N04 |
H4 |
0.0 |
0.1 |
| S01 |
C11 |
C12 |
H10 |
359.0 |
0.3 |
| S01 |
C11 |
C10 |
H9 |
1.0 |
359.9 |
| S01 |
N07 |
C14 |
O04 |
298.9 |
0.0 |
| S01 |
N07 |
C14 |
C15 |
116.4 |
180.4 |
| C14 |
N07 |
S01 |
H12 |
237.6 |
179.9 |
| N02 |
C01 |
C02 |
N01 |
359.9 |
0.1 |
| C01 |
N02 |
C04 |
C05 |
179.7 |
180.0 |
| C02 |
C01 |
N02 |
C04 |
359.8 |
359.9 |
| C01 |
C02 |
N01 |
C03 |
0.1 |
359.9 |
| C12 |
C11 |
C10 |
H9 |
178.6 |
180.1 |
| C13 |
C12 |
C11 |
H10 |
180.0 |
179.7 |
| C11 |
C12 |
C13 |
H11 |
179.4 |
180.0 |
| C11 |
C10 |
C09 |
H8 |
180.7 |
180.1 |
| S01 |
N07 |
C14 |
H12 |
122.4 |
180.1 |
| C15 |
C14 |
N07 |
O04 |
177.5 |
180.3 |
| N07 |
C14 |
O04 |
N08 |
179.0 |
179.8 |
| N07 |
C14 |
C15 |
C16 |
181.5 |
180.0 |
| N02 |
C04 |
C05 |
N06 |
287.3 |
275.1 |
| N02 |
C04 |
C05 |
H2 |
48.3 |
35.1 |
| N02 |
C04 |
C05 |
H3 |
166.4 |
155.0 |
| N02 |
C04 |
C03 |
H1 |
179.6 |
180.0 |
| C11 |
C12 |
C13 |
H10 |
180.0 |
180.3 |
| N01 |
C02 |
C01 |
N02 |
359.9 |
0.1 |
| C02 |
N01 |
C03 |
H1 |
180.1 |
180.0 |
| C13 |
C08 |
N06 |
H7 |
345.9 |
179.8 |
| C09 |
C08 |
N06 |
H7 |
166.2 |
0.0 |
| C05 |
C04 |
C03 |
H1 |
0.3 |
0.1 |
| N06 |
C05 |
C04 |
H2 |
239.0 |
240.0 |
| N06 |
C05 |
C04 |
H3 |
120.9 |
120.1 |
| C04 |
C05 |
N06 |
H7 |
4.4 |
359.9 |
| H2 |
C05 |
C04 |
H3 |
241.9 |
240.1 |
| C01 |
N02 |
C04 |
C03 |
0.4 |
0.1 |
| N01 |
C03 |
C04 |
H1 |
180.0 |
179.9 |
| C08 |
N06 |
C05 |
H2 |
5.7 |
60.0 |
| C08 |
N06 |
C05 |
H3 |
247.6 |
300.0 |
| C05 |
N06 |
C08 |
H7 |
237.8 |
179.9 |
| N07 |
C14 |
O04 |
C15 |
178.1 |
180.3 |
| O04 |
C14 |
N07 |
H12 |
176.5 |
179.9 |
| O04 |
C14 |
C15 |
C16 |
359.2 |
0.3 |
| N07 |
C14 |
C15 |
O04 |
182.4 |
179.7 |
| C15 |
C14 |
N07 |
H12 |
354.0 |
0.2 |
| C15 |
C14 |
O04 |
N08 |
0.9 |
359.5 |
| C14 |
C15 |
C16 |
C18 |
180.5 |
180.0 |
| C04 |
C05 |
N06 |
H2 |
120.9 |
120.0 |
| C04 |
C05 |
N06 |
H3 |
239.1 |
240.0 |
| C08 |
N06 |
C05 |
H7 |
122.2 |
180.1 |
| H2 |
C05 |
N06 |
H3 |
118.1 |
120.0 |
| O04 |
N08 |
C16 |
C18 |
180.0 |
179.7 |
| C04 |
C03 |
N01 |
H1 |
180.0 |
180.1 |
| C17 |
C15 |
C16 |
C18 |
0.0 |
0.0 |
| C16 |
C15 |
C14 |
O04 |
359.2 |
0.3 |
| N08 |
C16 |
C15 |
C18 |
180.0 |
180.0 |
| C15 |
C16 |
C18 |
H16 |
180.0 |
90.0 |
| C15 |
C16 |
C18 |
H17 |
300.0 |
210.0 |
| C15 |
C16 |
C18 |
H18 |
60.0 |
330.0 |
| C14 |
O04 |
N08 |
C16 |
359.5 |
0.5 |
| C15 |
C16 |
N08 |
C18 |
180.0 |
180.0 |
| N08 |
C16 |
C18 |
H16 |
0.0 |
270.0 |
| N08 |
C16 |
C18 |
H17 |
120.0 |
30.0 |
| N08 |
C16 |
C18 |
H18 |
240.0 |
150.0 |
| H16 |
C18 |
C16 |
H17 |
240.0 |
240.0 |
| H16 |
C18 |
C16 |
H18 |
120.0 |
120.0 |
| H17 |
C18 |
C16 |
H18 |
240.0 |
240.1 |
| C04 |
C05 |
H2 |
N06 |
234.1 |
240.0 |
| C04 |
C05 |
H2 |
H3 |
117.1 |
119.9 |
| N06 |
C05 |
H2 |
H3 |
242.9 |
240.0 |
| H2 |
C05 |
N06 |
H7 |
243.5 |
239.9 |
| C04 |
C05 |
H3 |
N06 |
125.9 |
120.1 |
| C04 |
C05 |
H3 |
H2 |
243.0 |
240.0 |
| N06 |
C05 |
H3 |
H2 |
117.1 |
120.0 |
| H3 |
C05 |
N06 |
H7 |
125.4 |
120.0 |
| H7 |
N06 |
C05 |
H2 |
243.5 |
239.9 |
| H7 |
N06 |
C05 |
H3 |
125.4 |
120.0 |
| H9 |
C10 |
C09 |
H8 |
0.7 |
360.0 |
| C11 |
C12 |
H10 |
C13 |
180.0 |
179.7 |
| H10 |
C12 |
C13 |
H11 |
359.4 |
359.7 |
| H11 |
C13 |
C12 |
H10 |
359.4 |
359.7 |
| S01 |
N07 |
H12 |
C14 |
223.5 |
179.9 |
| H12 |
N07 |
C14 |
O04 |
176.5 |
179.9 |
| H12 |
N07 |
C14 |
C15 |
354.0 |
0.2 |
| H14 |
C17 |
H13 |
H15 |
120.0 |
120.0 |
| H13 |
C17 |
H14 |
H15 |
240.0 |
240.0 |
| H13 |
C17 |
H15 |
H14 |
120.0 |
120.0 |
| C16 |
C18 |
H16 |
H17 |
120.0 |
120.0 |
| C16 |
C18 |
H16 |
H18 |
240.0 |
240.0 |
| H17 |
C18 |
H16 |
H18 |
120.0 |
120.0 |
| C16 |
C18 |
H17 |
H16 |
240.0 |
240.0 |
| C16 |
C18 |
H17 |
H18 |
120.0 |
120.0 |
| H16 |
C18 |
H17 |
H18 |
240.0 |
240.0 |
| C16 |
C18 |
H18 |
H16 |
120.0 |
120.0 |
| C16 |
C18 |
H18 |
H17 |
240.0 |
240.0 |
| H16 |
C18 |
H18 |
H17 |
120.0 |
120.0 |