PDB Chemical Component 6MA

Ideal Model

Chemical Description

Name N6-METHYL-DEOXY-ADENOSINE-5'-MONOPHOSPHATE
Formula C11 H16 N5 O6 P
Formal charge 0
Molecular weight 345.248 g/mol
Component type DNA LINKING
Nonstandard Parent Id A

Chemical features

Atom count 39
Chiral atom count 3
Chiral atoms C4' C3' C1'
Observed leaving atoms OP3 HO3'
Bond count 41
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-N-methyladenosine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-3-hydroxy-5-[6-(methylamino)purin-9-yl]oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CNc1ncnc2n(cnc12)[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3
SMILES (CACTVS) CNc1ncnc2n(cnc12)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3
Stereo SMILES (OpenEye) CNc1c2c(ncn1)n(cn2)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O
InChI descriptor InChI=1S/C11H16N5O6P/c1-12-10-9-11(14-4-13-10)16(5-15-9)8-2-6(17)7(22-8)3-21-23(18,19)20/h4-8,17H,2-3H2,1H3,(H,12,13,14)(H2,18,19,20)/t6-,7+,8+/m0/s1
InChIKey descriptor MGKYNCZAQIZDCV-XLPZGREQSA-N

Status Information

Last modified 2011-06-04
Created 2003-02-05
Release status REL
Replaces 6MC
Processing site RCSB