PDB Chemical Component 6MA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 6MA

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP3 P   1.610
OP3 HOP3   0.967
P OP1 1.484 1.480
P OP2 1.484 1.610
P O5' 1.588 1.610
OP2 HOP2 0.950 0.966
O5' C5' 1.417 1.429
C5' C4' 1.507 1.530
C5' H5' 1.100 1.090
C5' H5'' 1.100 1.090
C4' O4' 1.448 1.444
C4' C3' 1.529 1.550
C4' H4' 1.100 1.090
O4' C1' 1.417 1.437
C3' O3' 1.430 1.429
C3' C2' 1.523 1.548
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.968
C2' C1' 1.526 1.541
C2' H2' 1.100 1.090
C2' H2'' 1.100 1.089
C1' N9 1.466 1.465
C1' H1' 1.100 1.090
N9 C8 1.371 1.364
N9 C4 1.376 1.371
C8 N7 1.311 1.301
C8 H8 1.080 1.079
N7 C5 1.389 1.355
C5 C6 1.419 1.405
C5 C4 1.386 1.405
C6 N1 1.346 1.329
C6 N6 1.340 1.383
N1 C2 1.342 1.321
C2 N3 1.328 1.315
C2 H2 1.080 1.081
N3 C4 1.347 1.330
N6 C1 1.498 1.465
N6 H61 1.000 0.970
C1 H11 1.100 1.091
C1 H12 1.100 1.090
C1 H13 1.100 1.090

Bond Angles for 6MA

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
P OP3 HOP3   114.0
OP3 P OP1   109.5
OP3 P OP2   109.5
OP3 P O5'   109.5
OP1 P OP2 119.6 109.5
OP1 P O5' 108.9 109.5
OP2 P O5' 107.0 109.5
P OP2 HOP2 109.5 114.1
P O5' C5' 119.7 123.0
O5' C5' C4' 110.2 109.4
O5' C5' H5' 109.2 109.4
O5' C5' H5'' 109.2 109.5
C4' C5' H5' 109.2 109.5
C4' C5' H5'' 109.2 109.5
C5' C4' O4' 110.5 110.6
C5' C4' C3' 114.8 110.6
C5' C4' H4' 104.3 110.6
H5' C5' H5'' 109.7 109.5
O4' C4' C3' 107.1 103.5
O4' C4' H4' 112.4 110.6
C4' O4' C1' 110.5 107.0
C3' C4' H4' 107.9 110.7
C4' C3' O3' 108.7 110.9
C4' C3' C2' 103.7 102.1
C4' C3' H3' 115.0 110.9
O4' C1' C2' 106.1 107.3
O4' C1' N9 107.3 109.9
O4' C1' H1' 115.2 109.9
O3' C3' C2' 113.1 110.9
O3' C3' H3' 105.8 110.8
C3' O3' HO3' 109.5 114.0
C2' C3' H3' 110.7 110.9
C3' C2' C1' 103.6 104.2
C3' C2' H2' 111.5 110.5
C3' C2' H2'' 111.5 110.5
C1' C2' H2' 111.5 110.5
C1' C2' H2'' 111.5 110.5
C2' C1' N9 115.3 109.9
C2' C1' H1' 107.2 109.8
H2' C2' H2'' 107.4 110.6
N9 C1' H1' 106.0 110.0
C1' N9 C8 127.7 126.2
C1' N9 C4 126.5 126.3
C8 N9 C4 105.8 107.4
N9 C8 N7 113.9 110.0
N9 C8 H8 123.1 125.0
N9 C4 C5 105.9 106.0
N9 C4 N3 127.3 134.9
N7 C8 H8 123.1 125.0
C8 N7 C5 104.0 109.4
N7 C5 C6 132.7 134.7
N7 C5 C4 110.5 107.1
C6 C5 C4 116.8 118.2
C5 C6 N1 117.4 118.5
C5 C6 N6 124.7 120.8
C5 C4 N3 126.8 119.0
N1 C6 N6 117.9 120.8
C6 N1 C2 118.8 121.2
C6 N6 C1 123.9 120.0
C6 N6 H61 104.9 120.0
N1 C2 N3 129.5 122.5
N1 C2 H2 115.3 118.8
N3 C2 H2 115.2 118.7
C2 N3 C4 110.6 120.6
C1 N6 H61 104.9 120.0
N6 C1 H11 109.5 109.5
N6 C1 H12 109.5 109.5
N6 C1 H13 109.5 109.5
H11 C1 H12 109.4 109.4
H11 C1 H13 109.5 109.4
H12 C1 H13 109.5 109.5

Torsion Angles for 6MA

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP3 OP2   240.0
OP1 P OP3 O5'   120.0
OP2 P OP3 O5'   240.0
OP3 P OP2 HOP2   60.0
OP3 P O5' C5'   175.0
HOP3 OP3 P OP1   300.0
HOP3 OP3 P OP2   60.0
HOP3 OP3 P O5'   180.0
OP1 P OP3 HOP3   300.0
OP3 P OP1 OP2   120.0
OP3 P OP1 O5'   240.0
OP2 P OP1 O5' 123.4 120.0
OP1 P OP2 HOP2 0.0 180.0
OP1 P O5' C5' 196.0 55.0
OP2 P OP3 HOP3   60.0
OP3 P OP2 OP1   240.0
OP3 P OP2 O5'   120.0
OP1 P OP2 O5' 235.7 240.0
OP2 P O5' C5' 65.4 295.0
O5' P OP3 HOP3   180.0
OP3 P O5' OP1   120.0
OP3 P O5' OP2   240.0
OP1 P O5' OP2 130.6 120.0
O5' P OP2 HOP2 124.3 300.0
P O5' C5' C4' 190.9 180.0
P O5' C5' H5' 310.9 300.0
P O5' C5' H5'' 71.0 60.0
HOP2 OP2 P O5' 124.3 300.0
C4' C5' O5' H5' 240.0 240.0
C4' C5' O5' H5'' 120.0 120.0
O5' C5' C4' O4' 279.0 66.5
O5' C5' C4' C3' 40.2 180.5
O5' C5' C4' H4' 158.0 303.5
H5' C5' O5' H5'' 239.9 240.0
O5' C5' C4' H5' 120.0 119.9
O5' C5' C4' H5'' 240.0 240.0
H5' C5' C4' H5'' 120.0 120.1
O4' C4' C5' C3' 238.8 246.0
O4' C4' C5' H4' 121.0 123.0
C5' C4' O4' C1' 127.6 158.5
C3' C4' C5' H4' 242.1 237.0
C5' C4' C3' O3' 133.0 86.3
C5' C4' C3' C2' 253.6 204.5
C5' C4' C3' H3' 14.6 322.7
O5' C5' H5' C4' 239.4 240.1
O5' C5' H5' H5'' 119.7 120.0
C4' C5' H5' H5'' 240.3 239.9
H5' C5' C4' O4' 159.0 306.5
H5' C5' C4' C3' 280.2 60.6
H5' C5' C4' H4' 38.0 183.6
O5' C5' H5'' C4' 120.6 120.0
O5' C5' H5'' H5' 240.3 240.0
C4' C5' H5'' H5' 119.7 120.1
H5'' C5' C4' O4' 39.0 186.5
H5'' C5' C4' C3' 160.2 300.5
H5'' C5' C4' H4' 278.0 63.5
O4' C4' C5' H5' 159.0 306.5
O4' C4' C5' H5'' 39.0 186.5
C5' C4' O4' C3' 125.6 118.5
C5' C4' O4' H4' 243.9 237.1
C3' C4' O4' H4' 118.3 118.6
O4' C4' C3' O3' 256.0 204.8
O4' C4' C3' C2' 16.6 323.0
O4' C4' C3' H3' 137.6 81.2
C4' O4' C1' C2' 340.0 333.5
C4' O4' C1' N9 216.3 214.0
C4' O4' C1' H1' 98.5 92.9
C3' C4' C5' H5' 280.2 60.6
C3' C4' C5' H5'' 160.2 300.5
C5' C4' C3' O4' 237.0 241.5
C5' C4' C3' H4' 115.8 122.9
O4' C4' C3' H4' 238.8 241.4
C3' C4' O4' C1' 2.0 40.0
O3' C3' C4' C2' 239.4 241.8
O3' C3' C4' H3' 118.4 123.6
C4' C3' O3' HO3' 180.0 180.0
C2' C3' C4' H3' 239.0 241.8
C4' C3' C2' C1' 332.4 20.9
C4' C3' C2' H2' 92.4 139.5
C4' C3' C2' H2'' 212.4 262.2
H4' C4' C5' H5' 38.0 183.6
H4' C4' C5' H5'' 278.0 63.5
C5' C4' H4' O4' 119.7 123.0
C5' C4' H4' C3' 237.5 237.1
O4' C4' H4' C3' 117.8 114.1
H4' C4' O4' C1' 243.7 281.4
H4' C4' C3' O3' 17.2 323.3
H4' C4' C3' C2' 137.8 81.5
H4' C4' C3' H3' 258.8 199.7
C1' O4' C4' C3' 2.0 40.0
C1' O4' C4' H4' 243.7 281.4
C3' C2' C1' O4' 29.7 2.0
O4' C1' C2' H2' 269.7 243.3
O4' C1' C2' H2'' 149.7 120.7
C2' C1' O4' N9 123.8 119.5
C2' C1' O4' H1' 241.5 240.6
N9 C1' O4' H1' 117.8 121.2
O4' C1' N9 C8 69.2 23.6
O4' C1' N9 C4 249.7 203.3
O3' C3' C4' H4' 17.2 323.3
C4' C3' O3' C2' 114.6 112.7
C4' C3' O3' H3' 236.0 236.4
C2' C3' O3' H3' 121.4 123.6
O3' C3' C2' C1' 90.0 139.1
O3' C3' C2' H2' 210.0 257.7
O3' C3' C2' H2'' 330.0 20.4
C2' C3' C4' H4' 137.8 81.5
C4' C3' C2' O3' 242.4 241.8
C4' C3' C2' H3' 123.8 118.2
O4' C1' C2' C3' 29.7 2.0
O3' C3' C2' H3' 241.4 236.4
C2' C3' O3' HO3' 65.4 67.3
C1' C2' C3' H2' 240.0 241.4
C1' C2' C3' H2'' 120.0 118.7
C3' C2' C1' N9 148.3 121.5
C3' C2' C1' H1' 266.1 242.6
H2' C2' C3' H2'' 240.0 237.3
H3' C3' C4' H4' 258.8 199.7
C4' C3' H3' O3' 120.0 123.6
C4' C3' H3' C2' 242.9 247.3
O3' C3' H3' C2' 122.9 123.6
H3' C3' O3' HO3' 304.0 303.7
H3' C3' C2' C1' 208.6 262.7
H3' C3' C2' H2' 328.6 21.3
H3' C3' C2' H2'' 88.6 144.0
HO3' O3' C3' C2' 65.4 67.3
HO3' O3' C3' H3' 304.0 303.7
O4' C1' C2' N9 241.4 240.5
O4' C1' C2' H1' 123.6 119.4
C1' C2' C3' H3' 208.6 262.7
C3' C2' C1' H2' 120.0 118.7
C3' C2' C1' H2'' 240.0 241.3
H2' C2' C1' H2'' 120.0 122.7
N9 C1' C2' H1' 242.2 238.9
C2' C1' N9 C8 311.2 265.7
C2' C1' N9 C4 131.7 85.4
H2' C2' C3' H3' 328.6 21.3
C3' C2' H2' C1' 244.7 245.3
C3' C2' H2' H2'' 122.4 122.6
C1' C2' H2' H2'' 237.7 237.4
H2' C2' C1' N9 28.3 2.8
H2' C2' C1' H1' 146.1 123.9
H2'' C2' C3' H3' 88.6 144.0
C3' C2' H2'' C1' 115.2 114.8
C3' C2' H2'' H2' 237.6 237.4
C1' C2' H2'' H2' 122.4 122.6
H2'' C2' C1' N9 268.3 240.2
H2'' C2' C1' H1' 26.1 1.3
O4' C1' N9 C2' 118.0 117.9
O4' C1' N9 H1' 236.4 238.9
N9 C1' C2' H2' 28.3 2.8
N9 C1' C2' H2'' 268.3 240.2
C2' C1' N9 H1' 118.5 121.0
C8 N9 C1' C4 179.5 180.3
C1' N9 C8 N7 180.0 180.0
C1' N9 C8 H8 0.1 0.0
C1' N9 C4 C5 180.3 179.9
C1' N9 C4 N3 0.3 0.7
O4' C1' H1' C2' 242.1 242.2
O4' C1' H1' N9 118.5 121.1
H1' C1' C2' H2' 146.1 123.9
H1' C1' C2' H2'' 26.1 1.3
C2' C1' H1' N9 236.3 238.9
H1' C1' N9 C8 192.7 144.7
H1' C1' N9 C4 13.3 324.4
C8 N9 C1' H1' 192.7 144.7
C1' N9 C8 C4 180.4 179.8
C8 N9 C4 C5 0.7 359.6
C8 N9 C4 N3 180.7 180.5
N7 C8 N9 H8 180.0 179.9
N9 C8 N7 C5 359.9 0.1
C4 N9 C1' H1' 13.3 324.4
C1' N9 C4 C8 179.6 180.2
C4 N9 C8 N7 359.6 0.2
C4 N9 C8 H8 179.6 180.3
N7 C5 C4 N9 359.2 0.4
C6 C5 C4 N9 179.3 180.2
C5 C4 N9 N3 180.0 179.2
C2 N3 C4 N9 180.8 179.6
N7 C8 N9 C4 359.6 0.2
N9 C8 N7 H8 180.0 180.1
C8 N7 C5 C6 180.4 180.0
C8 N7 C5 C4 0.6 359.7
H8 C8 N9 C4 179.6 180.3
N9 C8 H8 N7 180.0 179.9
H8 C8 N7 C5 179.9 180.0
N9 C4 C5 N7 359.2 0.4
C5 N7 C8 H8 179.9 180.0
C6 C5 N7 C4 179.8 180.3
N7 C5 C6 N1 180.2 179.9
N7 C5 C6 N6 359.9 359.9
N7 C5 C4 N3 179.2 179.7
N9 C4 C5 C6 179.3 180.2
N7 C5 C6 C4 180.2 179.7
C6 C5 C4 N3 359.4 359.5
N1 C6 C5 N6 180.2 180.0
C5 C6 N1 C2 0.5 360.0
C5 C6 N6 C1 2.1 180.0
C5 C6 N6 H61 122.1 0.0
N9 C4 C5 N3 180.0 180.7
N7 C5 C4 C6 179.8 180.3
C4 C5 C6 N1 360.0 0.3
C4 C5 C6 N6 179.7 180.3
C2 N3 C4 C5 0.7 0.5
N1 C6 C5 C4 360.0 0.3
C5 C6 N1 N6 179.8 180.0
N1 C6 N6 C1 181.9 360.0
N1 C6 N6 H61 301.9 180.0
C6 N1 C2 N3 359.6 360.0
C6 N1 C2 H2 179.6 180.0
N6 C6 C5 C4 179.7 180.3
C5 C6 N6 N1 180.2 180.0
N6 C6 N1 C2 180.7 180.0
C1 N6 C6 H61 240.0 180.0
C6 N6 C1 H11 180.0 180.0
C6 N6 C1 H12 300.0 300.0
C6 N6 C1 H13 60.0 60.0
C2 N1 C6 N6 180.7 180.0
N3 C2 N1 H2 180.0 180.0
N1 C2 N3 C4 359.8 359.7
N9 C4 N3 C2 180.8 179.6
C5 C4 N3 C2 0.7 0.5
N1 C2 N3 H2 180.0 180.0
N1 C2 H2 N3 180.0 180.0
H2 C2 N3 C4 179.8 179.8
N9 C4 N3 C5 180.0 179.1
C4 N3 C2 H2 179.8 179.8
C6 N6 C1 H61 120.0 180.0
H11 C1 N6 H12 240.0 240.0
H11 C1 N6 H13 120.0 120.0
H12 C1 N6 H13 240.0 239.9
C6 N6 H61 C1 228.1 180.0
H61 N6 C1 H11 60.0 360.0
H61 N6 C1 H12 180.0 119.9
H61 N6 C1 H13 300.0 240.0
H11 C1 N6 H61 60.0 360.0
N6 C1 H11 H12 120.0 120.0
N6 C1 H11 H13 240.0 240.0
H12 C1 H11 H13 120.0 120.0
H12 C1 N6 H61 180.0 119.9
N6 C1 H12 H11 240.0 240.0
N6 C1 H12 H13 120.0 120.1
H11 C1 H12 H13 240.0 240.1
H13 C1 N6 H61 300.0 240.0
N6 C1 H13 H11 120.0 120.0
N6 C1 H13 H12 240.0 239.9
H11 C1 H13 H12 119.9 119.9