Atom Nomenclature for 6LQ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 6LQ

Atom Name (V3) Atom Name (V2)
C1 C1
N2 N2
C3 C3
C4 C4
N5 N5
C6 C6
C7 C7
S8 S8
O9 O9
O10 O10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
C19 C19
C20 C20
N21 N21
C22 C22
N23 N23
C24 C24
O25 O25
N26 N26
C27 C27
C28 C28
N29 N29
C30 C30
C31 C31
C32 C32
C33 C33
N34 N34
C35 C35
C36 C36
C37 C37
C38 C38
H11C H11C
H12C H12C
H13C H13C
H31C H31C
H32C H32C
H71C H71C
H72C H72C
H41C H41C
H42C H42C
H61C H61C
H62C H62C
H12 H12
H16 H16
H13 H13
H15 H15
H18 H18
H22 H22
H231 H231
H232 H232
H26 H26
H28 H28
H30 H30
H31 H31
H331 H331
H332 H332
H351 H351
H352 H352
H381 H381
H382 H382
H361 H361
H362 H362
H371 H371
H372 H372