PDB Chemical Component 6JX
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 6JX
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C |
N |
1.452 |
1.464 |
| N |
C1 |
1.333 |
1.379 |
| C1 |
N1 |
1.322 |
1.367 |
| C1 |
N5 |
1.353 |
1.309 |
| N1 |
C2 |
1.398 |
1.385 |
| N5 |
C13 |
1.384 |
1.362 |
| C2 |
C13 |
1.395 |
1.410 |
| C2 |
C3 |
1.400 |
1.383 |
| C13 |
C12 |
1.383 |
1.391 |
| C3 |
C4 |
1.405 |
1.392 |
| C9 |
C8 |
1.257 |
1.309 |
| C12 |
C11 |
1.393 |
1.390 |
| C4 |
C11 |
1.406 |
1.417 |
| C4 |
N2 |
1.399 |
1.358 |
| C11 |
C10 |
1.469 |
1.470 |
| C8 |
C7 |
1.470 |
1.507 |
| N2 |
C5 |
1.314 |
1.306 |
| C7 |
O1 |
1.450 |
1.452 |
| C10 |
O2 |
1.226 |
1.217 |
| C10 |
N4 |
1.370 |
1.352 |
| O1 |
C6 |
1.345 |
1.346 |
| C5 |
N4 |
1.360 |
1.365 |
| C5 |
N3 |
1.375 |
1.380 |
| C6 |
N3 |
1.372 |
1.349 |
| C6 |
O |
1.210 |
1.215 |
| C3 |
H1 |
1.080 |
1.080 |
| C7 |
H2 |
1.100 |
1.091 |
| C7 |
H3 |
1.101 |
1.090 |
| N1 |
H4 |
1.000 |
0.970 |
| N3 |
H5 |
1.000 |
0.970 |
| C8 |
H6 |
1.080 |
1.081 |
| C12 |
H7 |
1.081 |
1.079 |
| N |
H9 |
1.000 |
0.970 |
| C |
H10 |
1.100 |
1.090 |
| C |
H11 |
1.100 |
1.091 |
| C |
H12 |
1.100 |
1.090 |
| N4 |
H13 |
1.001 |
0.970 |
| C9 |
H14 |
1.080 |
1.080 |
| C9 |
H15 |
1.080 |
1.079 |
Bond Angles for 6JX
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C |
N |
H9 |
105.9 |
120.0 |
| N1 |
C1 |
N5 |
113.7 |
110.0 |
| C1 |
N1 |
C2 |
104.3 |
107.3 |
| C1 |
N1 |
H4 |
127.9 |
126.4 |
| C1 |
N5 |
C13 |
106.7 |
109.6 |
| N1 |
C2 |
C13 |
109.8 |
106.1 |
| C3 |
C2 |
C13 |
119.6 |
120.6 |
| C2 |
C13 |
C12 |
120.9 |
120.0 |
| C2 |
C3 |
C4 |
119.7 |
119.7 |
| C2 |
C3 |
H1 |
120.2 |
120.1 |
| C13 |
C12 |
H7 |
119.9 |
120.3 |
| C3 |
C4 |
C11 |
119.8 |
119.7 |
| C3 |
C4 |
N2 |
118.5 |
121.2 |
| C4 |
C3 |
H1 |
120.2 |
120.2 |
| C9 |
C8 |
H6 |
115.9 |
120.0 |
| N2 |
C4 |
C11 |
121.7 |
119.0 |
| C4 |
C11 |
C10 |
118.7 |
118.0 |
| C4 |
N2 |
C5 |
117.6 |
121.5 |
| C11 |
C10 |
N4 |
114.7 |
117.6 |
| C8 |
C7 |
O1 |
109.4 |
109.5 |
| C8 |
C7 |
H2 |
109.5 |
109.5 |
| C8 |
C7 |
H3 |
109.5 |
109.5 |
| N2 |
C5 |
N4 |
123.5 |
123.2 |
| N2 |
C5 |
N3 |
118.1 |
118.4 |
| O1 |
C7 |
H2 |
109.5 |
109.5 |
| O1 |
C7 |
H3 |
109.5 |
109.5 |
| C5 |
N4 |
C10 |
123.8 |
120.6 |
| C10 |
N4 |
H13 |
118.1 |
119.7 |
| N3 |
C5 |
N4 |
118.3 |
118.4 |
| C5 |
N4 |
H13 |
118.1 |
119.7 |
| C5 |
N3 |
C6 |
123.0 |
120.0 |
| C5 |
N3 |
H5 |
118.4 |
120.0 |
| N3 |
C6 |
O |
125.3 |
119.9 |
| C6 |
N3 |
H5 |
118.5 |
120.0 |
| H2 |
C7 |
H3 |
109.5 |
109.4 |
| H10 |
C |
H11 |
109.5 |
109.4 |
| H10 |
C |
H12 |
109.5 |
109.5 |
| H11 |
C |
H12 |
109.5 |
109.4 |
| H14 |
C9 |
H15 |
120.0 |
119.9 |
Torsion Angles for 6JX
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
C1 |
N1 |
H4 |
1.5 |
359.8 |
| N1 |
C1 |
N5 |
C13 |
359.1 |
360.0 |
| C1 |
N1 |
C2 |
C13 |
0.3 |
0.0 |
| N5 |
C1 |
N1 |
C2 |
0.4 |
360.0 |
| N5 |
C1 |
N1 |
H4 |
180.4 |
180.0 |
| C2 |
N1 |
C1 |
N5 |
0.4 |
360.0 |
| C1 |
N1 |
C2 |
H4 |
180.0 |
180.0 |
| C3 |
C2 |
N1 |
C13 |
177.3 |
180.0 |
| N1 |
C2 |
C13 |
C12 |
176.7 |
179.9 |
| N1 |
C2 |
C3 |
H1 |
4.2 |
360.0 |
| N5 |
C13 |
C12 |
H7 |
356.3 |
360.0 |
| C1 |
N5 |
C13 |
C2 |
1.0 |
0.0 |
| C13 |
C2 |
C3 |
C4 |
1.3 |
360.0 |
| C13 |
C2 |
C3 |
H1 |
181.3 |
179.9 |
| C2 |
C13 |
C12 |
H7 |
179.6 |
180.0 |
| C1 |
N1 |
C2 |
C3 |
177.6 |
180.0 |
| N1 |
C2 |
C3 |
C13 |
182.9 |
180.0 |
| C3 |
C2 |
C13 |
C12 |
359.0 |
360.0 |
| C2 |
C3 |
C4 |
C11 |
359.8 |
0.1 |
| C2 |
C3 |
C4 |
N2 |
179.0 |
180.0 |
| C4 |
C3 |
C2 |
H1 |
180.0 |
180.0 |
| C1 |
N5 |
C13 |
C12 |
184.0 |
180.1 |
| C4 |
C3 |
C2 |
C13 |
1.3 |
360.0 |
| C2 |
C3 |
C4 |
H1 |
180.0 |
180.0 |
| N2 |
C4 |
C3 |
C11 |
179.2 |
179.9 |
| C3 |
C4 |
C11 |
C10 |
177.9 |
180.0 |
| C3 |
C4 |
N2 |
C5 |
181.8 |
180.0 |
| C9 |
C8 |
C7 |
H2 |
43.2 |
255.0 |
| C9 |
C8 |
C7 |
H3 |
163.2 |
14.9 |
| C2 |
C13 |
C12 |
C11 |
359.6 |
0.0 |
| C12 |
C11 |
C10 |
N4 |
179.8 |
180.0 |
| C3 |
C4 |
C11 |
N2 |
179.1 |
179.9 |
| C11 |
C4 |
C3 |
H1 |
179.8 |
180.1 |
| C11 |
C4 |
N2 |
C5 |
1.0 |
359.9 |
| C4 |
C11 |
C10 |
N4 |
0.7 |
359.9 |
| C3 |
C4 |
N2 |
C11 |
180.9 |
180.1 |
| N2 |
C4 |
C3 |
H1 |
359.0 |
0.0 |
| N2 |
C4 |
C11 |
C10 |
358.8 |
0.1 |
| C4 |
N2 |
C5 |
N4 |
359.8 |
0.1 |
| C4 |
N2 |
C5 |
N3 |
178.1 |
180.0 |
| C5 |
N4 |
C10 |
C11 |
0.0 |
0.1 |
| C11 |
C10 |
N4 |
H13 |
180.1 |
180.1 |
| O1 |
C7 |
C8 |
H2 |
240.0 |
240.0 |
| O1 |
C7 |
C8 |
H3 |
120.0 |
120.1 |
| H2 |
C7 |
C8 |
H3 |
240.0 |
240.1 |
| C5 |
N2 |
C4 |
C11 |
1.0 |
359.9 |
| N2 |
C5 |
N4 |
C10 |
359.7 |
359.9 |
| N3 |
C5 |
N2 |
N4 |
178.3 |
179.9 |
| N2 |
C5 |
N4 |
H13 |
179.7 |
179.9 |
| N2 |
C5 |
N3 |
C6 |
54.2 |
0.1 |
| N2 |
C5 |
N3 |
H5 |
234.2 |
180.1 |
| C8 |
C7 |
O1 |
H2 |
120.0 |
120.0 |
| C8 |
C7 |
O1 |
H3 |
240.0 |
240.0 |
| H2 |
C7 |
O1 |
H3 |
120.0 |
119.9 |
| C4 |
C11 |
C10 |
O2 |
182.6 |
180.1 |
| C5 |
N4 |
C10 |
O2 |
178.2 |
179.9 |
| N3 |
C5 |
N4 |
C10 |
181.4 |
180.0 |
| C5 |
N4 |
C10 |
H13 |
180.0 |
180.0 |
| O1 |
C6 |
N3 |
H5 |
182.2 |
360.0 |
| C11 |
C10 |
N4 |
C5 |
0.0 |
0.1 |
| N2 |
C5 |
N4 |
N3 |
178.3 |
179.9 |
| C10 |
N4 |
C5 |
H13 |
180.0 |
180.0 |
| N4 |
C5 |
N3 |
C6 |
232.6 |
180.0 |
| N4 |
C5 |
N3 |
H5 |
52.6 |
359.9 |
| N2 |
C5 |
N3 |
N4 |
181.6 |
180.1 |
| N3 |
C5 |
N4 |
H13 |
1.4 |
0.1 |
| C5 |
N3 |
C6 |
O |
183.5 |
0.0 |
| C6 |
N3 |
C5 |
H5 |
180.0 |
180.0 |
| C6 |
N3 |
C5 |
N4 |
232.6 |
180.0 |
| C5 |
N3 |
C6 |
H5 |
180.0 |
180.0 |
| O |
C6 |
N3 |
H5 |
3.5 |
180.0 |
| H1 |
C3 |
C2 |
C13 |
181.3 |
179.9 |
| C2 |
C3 |
H1 |
C4 |
180.0 |
180.0 |
| H1 |
C3 |
C4 |
C11 |
179.8 |
180.1 |
| H1 |
C3 |
C4 |
N2 |
359.0 |
0.0 |
| C8 |
C7 |
H2 |
O1 |
240.0 |
239.9 |
| C8 |
C7 |
H2 |
H3 |
120.0 |
120.0 |
| O1 |
C7 |
H2 |
H3 |
240.0 |
240.0 |
| C8 |
C7 |
H3 |
O1 |
120.0 |
120.1 |
| C8 |
C7 |
H3 |
H2 |
240.0 |
240.1 |
| O1 |
C7 |
H3 |
H2 |
120.0 |
120.0 |
| H4 |
N1 |
C1 |
N5 |
180.4 |
180.0 |
| C1 |
N1 |
H4 |
C2 |
180.0 |
180.0 |
| H4 |
N1 |
C2 |
C13 |
180.3 |
180.0 |
| H5 |
N3 |
C5 |
N4 |
52.6 |
359.9 |
| C5 |
N3 |
H5 |
C6 |
180.0 |
180.0 |
| H5 |
N3 |
C6 |
O |
3.5 |
180.0 |
| H6 |
C8 |
C7 |
O1 |
103.2 |
315.1 |
| H6 |
C8 |
C7 |
H2 |
223.2 |
75.1 |
| H6 |
C8 |
C7 |
H3 |
343.2 |
195.0 |
| H10 |
C |
N |
H9 |
301.9 |
240.0 |
| H11 |
C |
H10 |
H12 |
120.0 |
119.9 |
| H11 |
C |
N |
H9 |
62.0 |
359.9 |
| H10 |
C |
H11 |
H12 |
240.0 |
240.1 |
| H12 |
C |
N |
H9 |
181.9 |
120.0 |
| H10 |
C |
H12 |
H11 |
120.0 |
119.9 |
| C5 |
N4 |
H13 |
C10 |
180.0 |
180.0 |
| H14 |
C9 |
C8 |
H6 |
360.0 |
359.9 |
| H15 |
C9 |
C8 |
H6 |
180.0 |
180.0 |