PDB Chemical Component 6IA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 6IA

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP3 P   1.610
OP3 HOP3   0.966
P OP1 1.488 1.480
P OP2 1.498 1.611
P O5' 1.592 1.610
OP2 HOP2 0.950 0.967
O5' C5' 1.451 1.429
C5' C4' 1.512 1.530
C5' H5' 1.100 1.090
C5' H5'' 1.100 1.089
C4' O4' 1.411 1.437
C4' C3' 1.524 1.542
C4' H4' 1.100 1.090
O4' C1' 1.442 1.443
C3' O3' 1.430 1.429
C3' C2' 1.527 1.548
C3' H3' 1.099 1.090
O3' HO3' 0.950 0.967
C2' O2' 1.420 1.429
C2' C1' 1.519 1.549
C2' H2' 1.100 1.090
O2' HO2' 0.950 0.967
C1' N9 1.474 1.466
C1' H1' 1.100 1.091
N9 C8 1.371 1.363
N9 C4 1.376 1.371
C8 N7 1.309 1.302
C8 H8 1.080 1.080
N7 C5 1.391 1.355
C5 C6 1.415 1.405
C5 C4 1.379 1.404
C6 N6 1.326 1.385
C6 N1 1.367 1.329
N6 C12   1.464
N6 HN6 1.000 0.970
N1 C2 1.361 1.322
C2 N3 1.332 1.315
C2 H2 1.080 1.080
N3 C4 1.349 1.330
C12 C13   1.530
C12 H121   1.090
C12 H122   1.090
C13 C14   1.531
C13 H131   1.090
C13 H132   1.089
C14 C15   1.529
C14 C16   1.530
C14 H14   1.090
C15 H151   1.090
C15 H152   1.091
C15 H153   1.089
C16 H161   1.090
C16 H162   1.090
C16 H163   1.090

Bond Angles for 6IA

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
P OP3 HOP3   114.0
OP3 P OP1   109.5
OP3 P OP2   109.5
OP3 P O5'   109.5
OP1 P OP2 112.1 109.5
OP1 P O5' 114.6 109.5
OP2 P O5' 111.6 109.4
P OP2 HOP2 109.5 114.0
P O5' C5' 119.9 123.0
O5' C5' C4' 106.8 109.4
O5' C5' H5' 110.4 109.5
O5' C5' H5'' 111.0 109.5
C4' C5' H5' 110.4 109.5
C4' C5' H5'' 110.9 109.5
C5' C4' O4' 110.4 109.9
C5' C4' C3' 115.5 109.8
C5' C4' H4' 103.4 109.9
H5' C5' H5'' 107.4 109.5
O4' C4' C3' 105.1 107.3
O4' C4' H4' 114.0 109.9
C4' O4' C1' 110.0 107.0
C3' C4' H4' 108.8 110.0
C4' C3' O3' 113.3 110.5
C4' C3' C2' 101.5 104.1
C4' C3' H3' 113.4 110.5
O4' C1' C2' 106.7 103.5
O4' C1' N9 111.2 110.7
O4' C1' H1' 110.2 110.6
O3' C3' C2' 112.8 110.5
O3' C3' H3' 102.3 110.4
C3' O3' HO3' 109.5 114.0
C2' C3' H3' 113.9 110.6
C3' C2' O2' 107.2 110.9
C3' C2' C1' 102.3 102.1
C3' C2' H2' 116.0 110.9
O2' C2' C1' 111.4 110.9
O2' C2' H2' 107.7 110.7
C2' O2' HO2' 109.5 114.0
C1' C2' H2' 112.2 111.0
C2' C1' N9 109.3 110.6
C2' C1' H1' 111.9 110.6
N9 C1' H1' 107.6 110.6
C1' N9 C8 128.2 126.2
C1' N9 C4 125.9 126.3
C8 N9 C4 105.8 107.5
N9 C8 N7 113.9 110.0
N9 C8 H8 123.1 125.1
N9 C4 C5 105.8 106.0
N9 C4 N3 126.6 134.9
N7 C8 H8 123.0 124.9
C8 N7 C5 103.7 109.4
N7 C5 C6 131.5 134.6
N7 C5 C4 110.7 107.1
C6 C5 C4 117.8 118.2
C5 C6 N6 124.1 120.8
C5 C6 N1 115.1 118.5
C5 C4 N3 127.6 119.0
N6 C6 N1 120.8 120.7
C6 N6 C12   120.0
C6 N6 HN6 124.4 120.0
C6 N1 C2 121.7 121.1
C12 N6 HN6   120.0
N6 C12 C13   109.5
N6 C12 H121   109.5
N6 C12 H122   109.5
N1 C2 N3 126.2 122.5
N1 C2 H2 116.9 118.7
N3 C2 H2 116.9 118.8
C2 N3 C4 111.7 120.7
C13 C12 H121   109.4
C13 C12 H122   109.4
C12 C13 C14   109.5
C12 C13 H131   109.5
C12 C13 H132   109.5
H121 C12 H122   109.5
C14 C13 H131   109.4
C14 C13 H132   109.5
C13 C14 C15   109.5
C13 C14 C16   109.4
C13 C14 H14   109.5
H131 C13 H132   109.5
C15 C14 C16   109.5
C15 C14 H14   109.5
C14 C15 H151   109.5
C14 C15 H152   109.5
C14 C15 H153   109.5
C16 C14 H14   109.5
C14 C16 H161   109.4
C14 C16 H162   109.5
C14 C16 H163   109.5
H151 C15 H152   109.4
H151 C15 H153   109.5
H152 C15 H153   109.5
H161 C16 H162   109.5
H161 C16 H163   109.5
H162 C16 H163   109.4

Torsion Angles for 6IA

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP3 OP2   240.0
OP1 P OP3 O5'   120.0
OP2 P OP3 O5'   240.1
OP3 P OP2 HOP2   59.9
OP3 P O5' C5'   175.0
HOP3 OP3 P OP1   300.0
HOP3 OP3 P OP2   60.1
HOP3 OP3 P O5'   180.0
OP1 P OP3 HOP3   300.0
OP3 P OP1 OP2   120.0
OP3 P OP1 O5'   240.0
OP2 P OP1 O5' 128.5 119.9
OP1 P OP2 HOP2 133.5 180.0
OP1 P O5' C5' 241.0 55.0
OP2 P OP3 HOP3   60.1
OP3 P OP2 OP1   239.9
OP3 P OP2 O5'   120.0
OP1 P OP2 O5' 229.9 240.0
OP2 P O5' C5' 112.3 295.0
O5' P OP3 HOP3   180.0
OP3 P O5' OP1   120.1
OP3 P O5' OP2   240.0
OP1 P O5' OP2 128.7 120.0
O5' P OP2 HOP2 263.6 300.0
P O5' C5' C4' 133.5 180.1
P O5' C5' H5' 253.5 300.0
P O5' C5' H5'' 12.5 60.1
HOP2 OP2 P O5' 263.6 300.0
C4' C5' O5' H5' 240.0 240.0
C4' C5' O5' H5'' 121.0 120.0
O5' C5' C4' O4' 263.1 66.5
O5' C5' C4' C3' 22.2 184.3
O5' C5' C4' H4' 140.8 305.4
H5' C5' O5' H5'' 241.0 240.0
O5' C5' C4' H5' 120.0 120.0
O5' C5' C4' H5'' 238.9 240.0
H5' C5' C4' H5'' 119.0 120.0
O4' C4' C5' C3' 240.9 242.2
O4' C4' C5' H4' 122.3 121.0
C5' C4' O4' C1' 148.3 145.9
C3' C4' C5' H4' 241.4 238.9
C5' C4' C3' O3' 80.3 119.9
C5' C4' C3' C2' 201.6 238.5
C5' C4' C3' H3' 324.3 357.3
O5' C5' H5' C4' 242.2 240.0
O5' C5' H5' H5'' 121.1 120.0
C4' C5' H5' H5'' 238.9 240.0
H5' C5' C4' O4' 143.1 306.5
H5' C5' C4' C3' 262.2 64.3
H5' C5' C4' H4' 20.8 185.5
O5' C5' H5'' C4' 118.5 120.0
O5' C5' H5'' H5' 239.3 240.0
C4' C5' H5'' H5' 120.7 120.0
H5'' C5' C4' O4' 24.2 186.5
H5'' C5' C4' C3' 143.2 304.3
H5'' C5' C4' H4' 261.9 65.4
O4' C4' C5' H5' 143.1 306.5
O4' C4' C5' H5'' 24.2 186.5
C5' C4' O4' C3' 125.2 119.4
C5' C4' O4' H4' 244.2 239.0
C3' C4' O4' H4' 119.0 119.6
O4' C4' C3' O3' 202.3 239.3
O4' C4' C3' C2' 323.5 358.0
O4' C4' C3' H3' 86.2 116.8
C4' O4' C1' C2' 0.0 320.0
C4' O4' C1' N9 241.0 201.4
C4' O4' C1' H1' 121.8 78.4
C3' C4' C5' H5' 262.2 64.3
C3' C4' C5' H5'' 143.2 304.3
C5' C4' C3' O4' 238.1 240.5
C5' C4' C3' H4' 115.6 121.1
O4' C4' C3' H4' 237.5 240.5
C3' C4' O4' C1' 23.1 26.5
O3' C3' C4' C2' 238.7 241.3
O3' C3' C4' H3' 116.1 122.5
C4' C3' O3' HO3' 356.0 180.0
C2' C3' C4' H3' 237.3 241.2
C4' C3' C2' O2' 278.0 220.9
C4' C3' C2' C1' 35.3 339.1
C4' C3' C2' H2' 157.7 97.4
H4' C4' C5' H5' 20.8 185.5
H4' C4' C5' H5'' 261.9 65.4
C5' C4' H4' O4' 119.9 121.0
C5' C4' H4' C3' 236.8 238.9
O4' C4' H4' C3' 116.9 117.9
H4' C4' O4' C1' 264.1 266.9
H4' C4' C3' O3' 324.7 358.8
H4' C4' C3' C2' 86.0 117.4
H4' C4' C3' H3' 208.7 236.3
C1' O4' C4' C3' 23.1 26.5
C1' O4' C4' H4' 264.1 266.9
C3' C2' C1' O4' 337.2 37.0
O2' C2' C1' O4' 91.4 155.2
O4' C1' C2' H2' 212.1 278.7
C2' C1' O4' N9 119.1 118.5
C2' C1' O4' H1' 238.3 241.5
N9 C1' O4' H1' 119.2 123.0
O4' C1' N9 C8 10.4 23.6
O4' C1' N9 C4 192.4 203.3
O3' C3' C4' H4' 324.7 358.8
C4' C3' O3' C2' 114.7 114.7
C4' C3' O3' H3' 237.5 237.4
C2' C3' O3' H3' 122.8 122.7
O3' C3' C2' O2' 39.7 339.6
O3' C3' C2' C1' 156.9 97.8
O3' C3' C2' H2' 279.4 216.1
C2' C3' C4' H4' 86.0 117.4
C4' C3' C2' O3' 238.4 241.4
C4' C3' C2' H3' 122.3 118.8
O4' C1' C2' C3' 337.2 37.0
O3' C3' C2' H3' 243.9 237.4
C2' C3' O3' HO3' 241.3 65.3
O2' C2' C3' C1' 242.8 241.8
O2' C2' C3' H2' 120.3 123.5
C3' C2' O2' HO2' 234.0 298.6
C1' C2' C3' H2' 237.5 241.7
C3' C2' C1' N9 97.5 155.6
C3' C2' C1' H1' 216.6 278.5
H3' C3' C4' H4' 208.7 236.3
C4' C3' H3' O3' 122.4 122.6
C4' C3' H3' C2' 244.5 245.2
O3' C3' H3' C2' 122.1 122.6
H3' C3' O3' HO3' 118.5 302.6
H3' C3' C2' O2' 155.7 102.2
H3' C3' C2' C1' 273.0 220.4
H3' C3' C2' H2' 35.4 338.7
HO3' O3' C3' C2' 241.3 65.3
HO3' O3' C3' H3' 118.5 302.6
O4' C1' C2' O2' 91.4 155.2
O2' C2' C3' H3' 155.7 102.2
C3' C2' O2' C1' 111.1 112.8
C3' C2' O2' H2' 234.5 236.4
C1' C2' O2' H2' 123.4 123.7
O2' C2' C1' N9 211.6 273.8
O2' C2' C1' H1' 330.8 36.7
O4' C1' C2' N9 239.7 241.4
O4' C1' C2' H1' 120.6 118.5
C1' C2' C3' H3' 273.0 220.4
C3' C2' C1' O2' 245.8 241.8
C3' C2' C1' H2' 125.0 118.3
O2' C2' C1' H2' 239.2 236.5
C1' C2' O2' HO2' 122.9 185.8
N9 C1' C2' H1' 240.9 237.1
C2' C1' N9 C8 252.9 269.5
C2' C1' N9 C4 74.9 89.2
H2' C2' C3' H3' 35.4 338.7
C3' C2' H2' O2' 120.1 123.6
C3' C2' H2' C1' 242.9 247.2
O2' C2' H2' C1' 122.9 123.6
H2' C2' O2' HO2' 359.5 62.1
H2' C2' C1' N9 332.4 37.3
H2' C2' C1' H1' 91.6 160.2
HO2' O2' C2' C1' 122.9 185.8
HO2' O2' C2' H2' 359.5 62.1
O4' C1' N9 C2' 117.5 114.1
O4' C1' N9 H1' 239.3 237.0
N9 C1' C2' H2' 332.4 37.3
C2' C1' N9 H1' 121.8 122.9
C8 N9 C1' C4 178.0 180.3
C1' N9 C8 N7 181.0 180.0
C1' N9 C8 H8 1.0 360.0
C1' N9 C4 C5 179.0 179.8
C1' N9 C4 N3 358.5 0.8
O4' C1' H1' C2' 241.4 245.9
O4' C1' H1' N9 121.3 123.0
H1' C1' C2' H2' 91.6 160.2
C2' C1' H1' N9 239.9 237.1
H1' C1' N9 C8 131.1 146.6
H1' C1' N9 C4 313.1 326.3
C8 N9 C1' H1' 131.1 146.6
C1' N9 C8 C4 181.7 179.7
C8 N9 C4 C5 0.6 359.6
C8 N9 C4 N3 180.2 180.6
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 0.4 0.0
C4 N9 C1' H1' 313.1 326.3
C1' N9 C4 C8 178.4 180.3
C4 N9 C8 N7 359.3 0.3
C4 N9 C8 H8 179.3 180.2
N7 C5 C4 N9 359.6 0.4
C6 C5 C4 N9 179.6 180.1
C5 C4 N9 N3 180.5 179.0
C2 N3 C4 N9 180.5 179.6
N7 C8 N9 C4 359.3 0.3
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 180.0 180.1
C8 N7 C5 C4 0.0 359.7
H8 C8 N9 C4 179.3 180.2
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 180.4 180.0
N9 C4 C5 N7 359.6 0.4
C5 N7 C8 H8 180.4 180.0
C6 C5 N7 C4 179.9 180.4
N7 C5 C6 N6 0.1 359.9
N7 C5 C6 N1 180.0 180.0
N7 C5 C4 N3 180.0 179.6
N9 C4 C5 C6 179.6 180.1
N7 C5 C6 C4 180.1 179.6
C6 C5 C4 N3 0.1 359.3
N6 C6 C5 N1 180.1 179.9
C5 C6 N6 C12   180.0
C5 C6 N6 HN6 164.0 0.1
C5 C6 N1 C2 0.1 359.9
N9 C4 C5 N3 179.5 180.8
N7 C5 C4 C6 179.9 180.3
C4 C5 C6 N6 180.0 180.3
C4 C5 C6 N1 359.9 0.4
C2 N3 C4 C5 359.9 0.7
N6 C6 C5 C4 180.0 180.3
C5 C6 N6 N1 179.9 180.1
N6 C6 N1 C2 180.0 180.0
C12 N6 C6 HN6   179.9
C6 N6 C12 C13   180.0
C6 N6 C12 H121   300.0
C6 N6 C12 H122   60.1
N1 C6 C5 C4 359.9 0.4
C5 C6 N1 N6 180.1 179.9
N1 C6 N6 C12   359.9
N1 C6 N6 HN6 344.1 180.0
C6 N1 C2 N3 360.0 0.1
C6 N1 C2 H2 180.0 180.1
C12 N6 C6 N1   359.9
C6 N6 C12 HN6   180.1
C13 C12 N6 H121   240.0
C13 C12 N6 H122   120.0
N6 C12 C13 C14   180.0
N6 C12 C13 H131   300.0
N6 C12 C13 H132   60.0
H121 C12 N6 H122   240.0
HN6 N6 C6 N1 344.1 180.0
C6 N6 HN6 C12   179.9
HN6 N6 C12 C13   360.0
HN6 N6 C12 H121   120.0
HN6 N6 C12 H122   240.0
N3 C2 N1 H2 180.0 180.1
N1 C2 N3 C4 0.0 359.5
N9 C4 N3 C2 180.5 179.6
C5 C4 N3 C2 359.9 0.7
N1 C2 N3 H2 180.0 179.9
N1 C2 H2 N3 180.0 180.1
H2 C2 N3 C4 180.0 179.6
N9 C4 N3 C5 180.6 178.9
C4 N3 C2 H2 180.0 179.6
C13 C12 N6 HN6   360.0
N6 C12 C13 H121   120.0
N6 C12 C13 H122   240.0
H121 C12 C13 H122   119.9
C14 C13 C12 H131   240.0
C14 C13 C12 H132   120.0
C12 C13 C14 C15   175.0
C12 C13 C14 C16   295.0
C12 C13 C14 H14   55.0
H131 C13 C12 H132   240.0
H121 C12 N6 HN6   120.0
N6 C12 H121 C13   240.0
N6 C12 H121 H122   120.1
C13 C12 H121 H122   240.1
H121 C12 C13 C14   60.0
H121 C12 C13 H131   180.0
H121 C12 C13 H132   300.0
H122 C12 N6 HN6   240.0
N6 C12 H122 C13   120.0
N6 C12 H122 H121   239.9
C13 C12 H122 H121   119.9
H122 C12 C13 C14   300.1
H122 C12 C13 H131   60.0
H122 C12 C13 H132   180.0
C14 C13 C12 H121   60.0
C14 C13 C12 H122   300.1
C12 C13 C14 H131   120.0
C12 C13 C14 H132   240.0
H131 C13 C14 H132   120.0
C15 C14 C13 C16   240.0
C15 C14 C13 H14   120.0
C13 C14 C15 H151   60.0
C13 C14 C15 H152   179.9
C13 C14 C15 H153   300.0
C16 C14 C13 H14   240.0
C13 C14 C16 H161   180.0
C13 C14 C16 H162   300.0
C13 C14 C16 H163   60.0
H131 C13 C12 H121   180.0
H131 C13 C12 H122   60.0
C12 C13 H131 C14   240.0
C12 C13 H131 H132   120.0
C14 C13 H131 H132   240.0
H131 C13 C14 C15   55.0
H131 C13 C14 C16   175.0
H131 C13 C14 H14   295.0
H132 C13 C12 H121   300.0
H132 C13 C12 H122   180.0
C12 C13 H132 C14   120.0
C12 C13 H132 H131   240.0
C14 C13 H132 H131   120.0
H132 C13 C14 C15   295.0
H132 C13 C14 C16   55.0
H132 C13 C14 H14   175.0
C15 C14 C13 H131   55.0
C15 C14 C13 H132   295.0
C13 C14 C15 C16   120.0
C13 C14 C15 H14   240.0
C16 C14 C15 H14   120.0
C15 C14 C16 H161   300.0
C15 C14 C16 H162   60.0
C15 C14 C16 H163   179.9
H151 C15 C14 H152   240.1
H151 C15 C14 H153   120.0
H152 C15 C14 H153   239.9
C16 C14 C13 H131   175.0
C16 C14 C13 H132   55.0
C13 C14 C16 C15   240.0
C13 C14 C16 H14   120.0
C15 C14 C16 H14   240.0
C16 C14 C15 H151   300.0
C16 C14 C15 H152   60.0
C16 C14 C15 H153   180.0
H161 C16 C14 H162   240.0
H161 C16 C14 H163   120.1
H162 C16 C14 H163   240.0
H14 C14 C13 H131   295.0
H14 C14 C13 H132   175.0
C13 C14 H14 C15   120.0
C13 C14 H14 C16   240.1
C15 C14 H14 C16   120.1
H14 C14 C15 H151   180.0
H14 C14 C15 H152   299.9
H14 C14 C15 H153   60.0
H14 C14 C16 H161   60.0
H14 C14 C16 H162   180.0
H14 C14 C16 H163   300.0
H151 C15 C14 C16   300.0
H151 C15 C14 H14   180.0
C14 C15 H151 H152   120.0
C14 C15 H151 H153   240.0
H152 C15 H151 H153   120.0
H152 C15 C14 C16   60.0
H152 C15 C14 H14   299.9
C14 C15 H152 H151   240.0
C14 C15 H152 H153   120.1
H151 C15 H152 H153   240.0
H153 C15 C14 C16   180.0
H153 C15 C14 H14   60.0
C14 C15 H153 H151   120.0
C14 C15 H153 H152   240.0
H151 C15 H153 H152   119.9
H161 C16 C14 H14   60.0
C14 C16 H161 H162   120.0
C14 C16 H161 H163   240.0
H162 C16 H161 H163   120.0
H162 C16 C14 H14   180.0
C14 C16 H162 H161   240.1
C14 C16 H162 H163   120.0
H161 C16 H162 H163   239.9
H163 C16 C14 H14   300.0
C14 C16 H163 H161   120.0
C14 C16 H163 H162   240.0
H161 C16 H163 H162   120.0