PDB Chemical Component 6HT

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 6HT

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.480 1.480
P OP2 1.479 1.609
P OP3 1.608 1.610
P O5' 1.609 1.609
OP2 HOP2 0.950 0.966
OP3 HOP3 0.950 0.967
O5' C5' 1.439 1.429
C5' C4' 1.518 1.530
C5' H5' 1.081 1.090
C5' H5'' 1.099 1.090
C4' O4' 1.443 1.427
C4' C3' 1.532 1.530
C4' H4' 1.089 1.089
O4' C6' 1.436 1.425
C3' O3' 1.428 1.429
C3' C2' 1.522 1.534
C3' H3' 1.090 1.090
O3' HO3' 0.950 0.967
C2' C1' 1.519 1.533
C2' H2' 1.093 1.090
C2' H2'' 1.094 1.089
C1' C6' 1.526 1.531
C1' N1 1.488 1.465
C1' H1' 1.091 1.090
C6' H6'1 1.089 1.090
C6' H6'2 1.088 1.089
N1 C2 1.384 1.345
N1 C6 1.374 1.368
C2 O2 1.230 1.216
C2 N3 1.381 1.345
N3 C4 1.380 1.348
N3 H3 1.008 0.970
C4 O4 1.230 1.218
C4 C5 1.442 1.415
C5 C5M 1.525 1.507
C5 C6 1.348 1.351
C5M H71 1.089 1.090
C5M H72 1.089 1.090
C5M H73 1.090 1.090
C6 H6 1.090 1.080

Bond Angles for 6HT

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 120.0 109.5
OP1 P OP3 108.4 109.4
OP1 P O5' 108.5 109.4
OP2 P OP3 108.3 109.5
OP2 P O5' 108.2 109.5
P OP2 HOP2 120.1 106.9
OP3 P O5' 102.1 109.5
P OP3 HOP3 108.3 106.8
P O5' C5' 120.5 106.9
O5' C5' C4' 112.1 109.5
O5' C5' H5' 109.5 109.5
O5' C5' H5'' 108.5 109.5
C4' C5' H5' 106.9 109.5
C4' C5' H5'' 110.0 109.4
C5' C4' O4' 109.2 109.4
C5' C4' C3' 109.5 109.4
C5' C4' H4' 108.8 109.4
H5' C5' H5'' 109.8 109.5
O4' C4' C3' 111.5 109.8
O4' C4' H4' 109.1 109.4
C4' O4' C6' 115.9 107.6
C3' C4' H4' 108.8 109.4
C4' C3' O3' 110.0 109.5
C4' C3' C2' 110.7 109.1
C4' C3' H3' 108.6 109.5
O4' C6' C1' 110.8 109.8
O4' C6' H6'1 109.2 109.4
O4' C6' H6'2 109.4 109.5
O3' C3' C2' 110.0 109.6
O3' C3' H3' 108.9 109.6
C3' O3' HO3' 110.0 106.8
C2' C3' H3' 108.7 109.5
C3' C2' C1' 111.7 108.6
C3' C2' H2' 108.9 109.6
C3' C2' H2'' 108.5 109.7
C1' C2' H2' 108.9 109.6
C1' C2' H2'' 108.7 109.7
C2' C1' C6' 107.8 109.1
C2' C1' N1 110.9 109.5
C2' C1' H1' 109.0 109.6
H2' C2' H2'' 110.1 109.7
C6' C1' N1 111.0 109.5
C6' C1' H1' 109.1 109.5
C1' C6' H6'1 109.5 109.4
C1' C6' H6'2 109.4 109.4
N1 C1' H1' 109.1 109.5
C1' N1 C2 117.6 119.7
C1' N1 C6 121.4 119.7
H6'1 C6' H6'2 108.4 109.4
C2 N1 C6 121.0 120.6
N1 C2 O2 122.4 119.5
N1 C2 N3 116.1 121.0
N1 C6 C5 121.5 119.6
N1 C6 H6 119.4 120.2
O2 C2 N3 121.6 119.5
C2 N3 C4 126.4 120.2
C2 N3 H3 116.8 120.0
C4 N3 H3 116.7 119.8
N3 C4 O4 120.7 120.4
N3 C4 C5 113.9 119.4
O4 C4 C5 125.4 120.2
C4 C5 C5M 119.4 120.5
C4 C5 C6 121.0 119.1
C5M C5 C6 119.6 120.4
C5 C5M H71 109.5 109.5
C5 C5M H72 109.5 109.5
C5 C5M H73 109.5 109.5
C5 C6 H6 119.1 120.2
H71 C5M H72 109.5 109.4
H71 C5M H73 109.4 109.5
H72 C5M H73 109.4 109.4

Torsion Angles for 6HT

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3 235.1 120.0
OP2 P OP1 O5' 125.0 240.0
OP1 P OP2 HOP2 180.0 300.0
OP3 P OP1 O5' 249.9 120.0
OP1 P OP3 HOP3 180.1 180.0
OP1 P O5' C5' 187.4 60.0
OP1 P OP2 OP3 125.0 240.0
OP1 P OP2 O5' 234.9 120.0
OP3 P OP2 O5' 109.9 239.9
OP2 P OP3 HOP3 311.7 60.0
OP2 P O5' C5' 55.7 180.0
OP1 P OP3 OP2 228.4 120.0
OP1 P OP3 O5' 114.3 240.1
OP2 P OP3 O5' 246.0 120.1
OP3 P OP2 HOP2 55.0 59.9
OP3 P O5' C5' 301.7 300.0
OP1 P O5' OP2 131.6 240.0
OP1 P O5' OP3 245.7 120.0
OP2 P O5' OP3 114.1 240.0
O5' P OP2 HOP2 305.0 180.0
O5' P OP3 HOP3 65.7 300.0
P O5' C5' C4' 158.8 180.0
P O5' C5' H5' 277.3 59.9
P O5' C5' H5'' 37.1 299.9
HOP2 OP2 P OP3 55.0 59.9
HOP2 OP2 P O5' 305.0 180.0
HOP3 OP3 P O5' 65.7 300.0
C4' C5' O5' H5' 241.5 120.0
C4' C5' O5' H5'' 121.7 240.0
O5' C5' C4' O4' 299.6 60.0
O5' C5' C4' C3' 61.9 180.3
O5' C5' C4' H4' 180.6 300.2
H5' C5' O5' H5'' 240.2 120.0
O5' C5' C4' H5' 120.0 240.0
O5' C5' C4' H5'' 239.1 120.0
H5' C5' C4' H5'' 119.2 240.0
O4' C4' C5' C3' 237.7 239.7
O4' C4' C5' H4' 119.0 119.8
C5' C4' O4' C6' 174.0 187.7
C3' C4' C5' H4' 241.2 240.1
C5' C4' C3' O3' 68.2 58.7
C5' C4' C3' C2' 189.8 178.7
C5' C4' C3' H3' 309.1 298.5
O5' C5' H5' C4' 238.4 120.1
O5' C5' H5' H5'' 119.0 240.0
C4' C5' H5' H5'' 240.7 120.0
H5' C5' C4' O4' 179.6 180.0
H5' C5' C4' C3' 301.9 300.3
H5' C5' C4' H4' 60.7 60.2
O5' C5' H5'' C4' 123.0 240.0
O5' C5' H5'' H5' 240.4 120.0
C4' C5' H5'' H5' 117.4 240.0
H5'' C5' C4' O4' 60.5 300.0
H5'' C5' C4' C3' 182.8 60.3
H5'' C5' C4' H4' 301.5 180.2
O4' C4' C5' H5' 179.6 180.0
O4' C4' C5' H5'' 60.5 300.0
C5' C4' O4' C3' 121.1 120.1
C5' C4' O4' H4' 241.2 240.2
C3' C4' O4' H4' 120.1 120.1
O4' C4' C3' O3' 189.1 178.8
O4' C4' C3' C2' 310.8 298.8
O4' C4' C3' H3' 70.0 58.6
C4' O4' C6' C1' 302.2 292.4
C4' O4' C6' H6'1 181.5 172.4
C4' O4' C6' H6'2 62.9 52.5
C3' C4' C5' H5' 301.9 300.3
C3' C4' C5' H5'' 182.8 60.3
C5' C4' C3' O4' 239.1 239.9
C5' C4' C3' H4' 118.8 119.8
O4' C4' C3' H4' 239.7 239.9
C3' C4' O4' C6' 52.9 67.6
O3' C3' C4' C2' 238.3 240.0
O3' C3' C4' H3' 119.1 120.2
C4' C3' O3' HO3' 180.0 180.0
C2' C3' C4' H3' 240.7 240.2
C4' C3' C2' C1' 53.9 53.6
C4' C3' C2' H2' 174.2 294.0
C4' C3' C2' H2'' 294.0 173.5
H4' C4' C5' H5' 60.7 60.2
H4' C4' C5' H5'' 301.5 180.2
C5' C4' H4' O4' 119.0 119.8
C5' C4' H4' C3' 240.8 240.2
O4' C4' H4' C3' 121.7 120.3
H4' C4' O4' C6' 292.8 307.5
H4' C4' C3' O3' 309.4 298.9
H4' C4' C3' C2' 71.0 58.9
H4' C4' C3' H3' 190.3 178.7
C6' O4' C4' C3' 52.9 67.6
C6' O4' C4' H4' 292.8 307.5
C2' C1' C6' O4' 57.7 61.3
O4' C6' C1' N1 296.1 301.4
O4' C6' C1' H1' 175.9 181.2
C1' C6' O4' H6'1 120.8 120.1
C1' C6' O4' H6'2 239.3 239.9
H6'1 C6' O4' H6'2 118.5 119.9
O3' C3' C4' H4' 309.4 298.9
C4' C3' O3' C2' 122.1 119.6
C4' C3' O3' H3' 241.1 239.8
C2' C3' O3' H3' 119.0 120.2
O3' C3' C2' C1' 175.6 173.5
O3' C3' C2' H2' 295.9 53.9
O3' C3' C2' H2'' 55.7 293.4
C2' C3' C4' H4' 71.0 58.9
C4' C3' C2' O3' 238.3 240.1
C4' C3' C2' H3' 119.2 119.8
O3' C3' C2' H3' 240.9 239.8
C2' C3' O3' HO3' 58.0 60.4
C1' C2' C3' H2' 239.7 119.7
C1' C2' C3' H2'' 119.9 240.2
C3' C2' C1' C6' 302.6 306.4
C3' C2' C1' N1 64.3 66.3
C3' C2' C1' H1' 184.4 186.4
H2' C2' C3' H2'' 240.1 120.5
H3' C3' C4' H4' 190.3 178.7
C4' C3' H3' O3' 119.8 120.2
C4' C3' H3' C2' 239.5 240.4
O3' C3' H3' C2' 119.8 120.2
H3' C3' O3' HO3' 299.0 300.2
H3' C3' C2' C1' 294.7 293.8
H3' C3' C2' H2' 54.9 174.1
H3' C3' C2' H2'' 174.8 53.6
HO3' O3' C3' C2' 58.0 60.4
HO3' O3' C3' H3' 299.0 300.2
O4' C6' C1' C2' 57.7 61.3
C1' C2' C3' H3' 294.7 293.8
C3' C2' C1' H2' 120.3 240.3
C3' C2' C1' H2'' 240.3 119.8
H2' C2' C1' H2'' 120.0 239.5
C6' C1' C2' N1 238.3 240.1
C6' C1' C2' H1' 118.3 119.9
C2' C1' C6' H6'1 178.3 181.4
C2' C1' C6' H6'2 296.9 301.2
N1 C1' C2' H1' 239.9 239.8
C2' C1' N1 C2 103.4 63.0
C2' C1' N1 C6 284.3 243.0
H2' C2' C3' H3' 54.9 174.1
C3' C2' H2' C1' 238.0 119.0
C3' C2' H2' H2'' 118.8 239.5
C1' C2' H2' H2'' 240.9 120.5
H2' C2' C1' C6' 182.4 66.0
H2' C2' C1' N1 304.0 185.9
H2' C2' C1' H1' 64.1 306.1
H2'' C2' C3' H3' 174.8 53.6
C3' C2' H2'' C1' 121.7 240.8
C3' C2' H2'' H2' 240.9 120.4
C1' C2' H2'' H2' 119.2 239.6
H2'' C2' C1' C6' 62.4 186.5
H2'' C2' C1' N1 184.0 306.4
H2'' C2' C1' H1' 304.1 66.6
O4' C6' C1' H6'1 239.4 239.9
O4' C6' C1' H6'2 120.8 120.1
C6' C1' C2' H2' 182.4 66.0
C6' C1' C2' H2'' 62.4 186.5
C2' C1' C6' N1 121.6 119.9
C2' C1' C6' H1' 241.8 240.1
N1 C1' C6' H1' 120.2 120.2
C6' C1' N1 C2 223.2 182.6
C6' C1' N1 C6 44.1 2.6
H6'1 C6' C1' H6'2 241.3 240.2
N1 C1' C2' H2' 304.0 185.9
N1 C1' C2' H2'' 184.0 306.4
C2' C1' N1 C6' 240.2 240.4
C2' C1' N1 H1' 120.0 120.2
C6' C1' N1 H1' 239.8 239.8
N1 C1' C6' H6'1 56.7 61.5
N1 C1' C6' H6'2 175.3 181.3
C2 N1 C1' C6 179.1 180.0
C1' N1 C2 O2 1.2 0.0
C1' N1 C2 N3 181.0 180.0
C1' N1 C6 C5 178.9 180.0
C1' N1 C6 H6 358.5 0.0
H1' C1' C2' H2' 64.1 306.1
H1' C1' C2' H2'' 304.1 66.6
C2' C1' H1' C6' 117.5 119.6
C2' C1' H1' N1 238.8 239.8
C6' C1' H1' N1 121.4 120.2
H1' C1' C6' H6'1 296.5 301.3
H1' C1' C6' H6'2 55.1 61.1
H1' C1' N1 C2 343.4 302.8
H1' C1' N1 C6 164.3 122.8
O4' C6' H6'1 C1' 121.6 120.3
O4' C6' H6'1 H6'2 240.8 240.1
H6'1 C6' C1' N1 56.7 61.5
H6'1 C6' C1' H1' 296.5 301.3
C1' C6' H6'1 H6'2 119.2 119.8
O4' C6' H6'2 C1' 238.4 239.7
O4' C6' H6'2 H6'1 119.1 119.9
H6'2 C6' C1' N1 175.3 181.3
H6'2 C6' C1' H1' 55.1 61.1
C1' C6' H6'2 H6'1 240.7 240.2
C2 N1 C1' H1' 343.4 302.8
C1' N1 C2 C6 180.9 180.0
C2 N1 C6 C5 359.9 360.0
C2 N1 C6 H6 179.4 180.0
O2 C2 N1 N3 180.2 180.0
N1 C2 N3 C4 0.1 359.8
N1 C2 N3 H3 180.3 180.0
C6 N1 C1' H1' 164.3 122.8
C1' N1 C6 C2 179.0 180.0
C6 N1 C2 O2 180.3 180.0
C6 N1 C2 N3 0.1 360.0
C4 C5 C6 N1 360.0 0.3
C5M C5 C6 N1 180.2 180.0
C5 C6 N1 H6 180.5 180.0
O2 C2 N1 C6 180.3 180.0
N1 C2 O2 N3 179.8 180.0
O2 C2 N3 C4 179.9 179.7
O2 C2 N3 H3 0.1 359.9
N3 C2 N1 C6 0.1 360.0
N1 C2 N3 O2 180.2 180.0
C4 N3 C2 H3 179.8 179.8
C2 N3 C4 O4 179.5 180.0
C2 N3 C4 C5 359.8 0.5
C2 N3 C4 H3 180.2 180.2
O4 C4 N3 C5 179.7 179.5
N3 C4 C5 C5M 179.9 179.8
N3 C4 C5 C6 0.2 359.5
C2 N3 H3 C4 179.8 179.8
H3 N3 C4 O4 359.3 359.8
H3 N3 C4 C5 179.6 180.3
O4 C4 N3 H3 359.3 359.8
N3 C4 O4 C5 180.3 180.5
O4 C4 C5 C5M 0.2 0.3
O4 C4 C5 C6 180.5 180.0
N1 C6 C5 C4 360.0 0.3
C5 C4 N3 H3 179.6 180.3
N3 C4 C5 O4 179.7 179.5
C5M C5 C4 C6 179.8 180.3
C4 C5 C5M H71 120.2 359.7
C4 C5 C5M H72 0.2 119.7
C4 C5 C5M H73 240.2 239.7
C4 C5 C6 H6 180.4 180.3
N1 C6 C5 C5M 180.2 180.0
C4 C5 C5M C6 180.2 179.7
C5M C5 C6 H6 0.7 360.0
H71 C5M C5 H72 120.1 240.1
H71 C5M C5 H73 240.1 120.1
H72 C5M C5 H73 120.0 240.0
N1 C6 C5 H6 179.5 180.0
C4 C5 C6 C5M 179.8 180.3
C6 C5 C5M H71 300.0 180.0
C6 C5 C5M H72 179.9 300.0
C6 C5 C5M H73 59.9 60.0
H71 C5M C5 C6 300.0 180.0
C5 C5M H71 H72 239.9 120.0
C5 C5M H71 H73 120.0 239.9
H72 C5M H71 H73 240.1 120.0
H72 C5M C5 C6 179.9 300.0
C5 C5M H72 H71 120.1 240.0
C5 C5M H72 H73 240.0 120.0
H71 C5M H72 H73 119.9 240.0
H73 C5M C5 C6 59.9 60.0
C5 C5M H73 H71 240.0 120.0
C5 C5M H73 H72 120.1 240.0
H71 C5M H73 H72 240.1 120.0
N1 C6 H6 C5 180.5 180.0