PDB Chemical Component 6HG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 6HG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.481 1.480
P OP2 1.478 1.610
P OP3 1.606 1.610
P O5' 1.609 1.609
OP2 HOP2 0.950 0.968
OP3 HOP3 0.950 0.967
O5' C5' 1.439 1.428
C5' C4' 1.517 1.530
C5' H5' 1.081 1.091
C5' H5'' 1.100 1.089
C4' O4' 1.441 1.426
C4' C3' 1.531 1.529
C4' H4' 1.091 1.090
O4' C6' 1.435 1.426
C3' O3' 1.430 1.429
C3' C2' 1.522 1.534
C3' H3' 1.091 1.090
O3' HO3' 0.950 0.967
C2' C1' 1.521 1.532
C2' H2' 1.096 1.090
C2' H2'' 1.094 1.090
C1' C6' 1.525 1.531
C1' N9 1.479 1.465
C1' H1' 1.090 1.090
C6' H6'1 1.086 1.090
C6' H6'2 1.088 1.089
N9 C8 1.358 1.364
N9 C4 1.378 1.368
C8 N7 1.290 1.301
C8 H8 1.090 1.079
N7 C5 1.397 1.355
C5 C6 1.418 1.416
C5 C4 1.386 1.398
C6 O6 1.228 1.219
C6 N1 1.384 1.351
N1 C2 1.374 1.362
N1 H1 1.010 0.970
C2 N2 1.327 1.372
C2 N3 1.335 1.315
N2 H21 1.011 0.970
N2 H22 1.009 0.969
N3 C4 1.354 1.338

Bond Angles for 6HG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 120.4 109.4
OP1 P OP3 108.1 109.5
OP1 P O5' 108.5 109.5
OP2 P OP3 107.8 109.4
OP2 P O5' 108.2 109.5
P OP2 HOP2 120.5 106.8
OP3 P O5' 102.1 109.5
P OP3 HOP3 108.1 106.7
P O5' C5' 120.4 106.8
O5' C5' C4' 112.1 109.5
O5' C5' H5' 109.4 109.4
O5' C5' H5'' 108.6 109.5
C4' C5' H5' 106.9 109.4
C4' C5' H5'' 110.1 109.5
C5' C4' O4' 109.6 109.4
C5' C4' C3' 109.5 109.4
C5' C4' H4' 108.7 109.4
H5' C5' H5'' 109.7 109.4
O4' C4' C3' 111.4 109.8
O4' C4' H4' 109.0 109.4
C4' O4' C6' 115.6 107.6
C3' C4' H4' 108.7 109.4
C4' C3' O3' 109.7 109.5
C4' C3' C2' 110.8 109.0
C4' C3' H3' 108.6 109.6
O4' C6' C1' 110.7 109.8
O4' C6' H6'1 109.3 109.4
O4' C6' H6'2 109.5 109.4
O3' C3' C2' 110.0 109.6
O3' C3' H3' 108.8 109.5
C3' O3' HO3' 109.8 106.8
C2' C3' H3' 108.8 109.6
C3' C2' C1' 112.0 108.5
C3' C2' H2' 108.8 109.7
C3' C2' H2'' 108.6 109.6
C1' C2' H2' 108.7 109.7
C1' C2' H2'' 108.7 109.7
C2' C1' C6' 108.4 109.1
C2' C1' N9 110.6 109.6
C2' C1' H1' 109.2 109.6
H2' C2' H2'' 110.1 109.8
C6' C1' N9 110.4 109.5
C6' C1' H1' 109.1 109.5
C1' C6' H6'1 109.4 109.4
C1' C6' H6'2 109.4 109.4
N9 C1' H1' 109.0 109.5
C1' N9 C8 129.6 126.2
C1' N9 C4 126.7 126.3
H6'1 C6' H6'2 108.6 109.4
C8 N9 C4 103.6 107.5
N9 C8 N7 117.7 109.8
N9 C8 H8 121.3 125.1
N9 C4 C5 106.2 106.1
N9 C4 N3 126.0 134.2
N7 C8 H8 121.1 125.1
C8 N7 C5 101.7 109.3
N7 C5 C6 129.7 134.1
N7 C5 C4 110.7 107.3
C6 C5 C4 119.5 118.6
C5 C6 O6 128.4 120.8
C5 C6 N1 111.5 118.3
C5 C4 N3 127.8 119.7
O6 C6 N1 120.1 120.9
C6 N1 C2 125.3 120.4
C6 N1 H1 115.9 119.8
C2 N1 H1 118.8 119.8
N1 C2 N2 116.2 119.1
N1 C2 N3 123.9 121.9
N2 C2 N3 119.9 119.1
C2 N2 H21 120.0 120.0
C2 N2 H22 120.0 120.0
C2 N3 C4 111.9 121.1
H21 N2 H22 120.0 120.0

Torsion Angles for 6HG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3 235.5 119.9
OP2 P OP1 O5' 125.5 240.0
OP1 P OP2 HOP2 180.0 300.0
OP3 P OP1 O5' 249.9 120.1
OP1 P OP3 HOP3 180.0 180.0
OP1 P O5' C5' 182.5 60.0
OP1 P OP2 OP3 124.6 240.0
OP1 P OP2 O5' 234.4 120.0
OP3 P OP2 O5' 109.8 240.0
OP2 P OP3 HOP3 311.7 60.0
OP2 P O5' C5' 50.2 180.0
OP1 P OP3 OP2 228.3 119.9
OP1 P OP3 O5' 114.4 240.0
OP2 P OP3 O5' 246.1 120.0
OP3 P OP2 HOP2 55.4 60.0
OP3 P O5' C5' 296.6 300.0
OP1 P O5' OP2 132.3 240.0
OP1 P O5' OP3 246.0 120.0
OP2 P O5' OP3 113.6 240.0
O5' P OP2 HOP2 305.6 180.0
O5' P OP3 HOP3 65.7 300.0
P O5' C5' C4' 166.2 180.0
P O5' C5' H5' 284.6 60.0
P O5' C5' H5'' 44.3 300.1
HOP2 OP2 P OP3 55.4 60.0
HOP2 OP2 P O5' 305.6 180.0
HOP3 OP3 P O5' 65.7 300.0
C4' C5' O5' H5' 241.6 120.0
C4' C5' O5' H5'' 121.8 239.9
O5' C5' C4' O4' 298.9 60.0
O5' C5' C4' C3' 61.3 180.3
O5' C5' C4' H4' 179.9 300.2
H5' C5' O5' H5'' 240.3 119.9
O5' C5' C4' H5' 119.9 240.0
O5' C5' C4' H5'' 239.0 120.1
H5' C5' C4' H5'' 119.1 240.1
O4' C4' C5' C3' 237.6 239.7
O4' C4' C5' H4' 119.0 119.8
C5' C4' O4' C6' 175.5 187.7
C3' C4' C5' H4' 241.4 240.1
C5' C4' C3' O3' 67.4 58.8
C5' C4' C3' C2' 189.1 178.7
C5' C4' C3' H3' 308.6 298.6
O5' C5' H5' C4' 238.4 120.0
O5' C5' H5' H5'' 119.0 240.0
C4' C5' H5' H5'' 240.6 119.9
H5' C5' C4' O4' 179.0 180.0
H5' C5' C4' C3' 301.4 300.3
H5' C5' C4' H4' 60.0 60.2
O5' C5' H5'' C4' 123.1 239.9
O5' C5' H5'' H5' 240.5 119.9
C4' C5' H5'' H5' 117.4 240.1
H5'' C5' C4' O4' 59.9 299.9
H5'' C5' C4' C3' 182.2 60.2
H5'' C5' C4' H4' 300.9 180.1
O4' C4' C5' H5' 179.0 180.0
O4' C4' C5' H5'' 59.9 299.9
C5' C4' O4' C3' 121.3 120.1
C5' C4' O4' H4' 241.1 240.2
C3' C4' O4' H4' 119.9 120.1
O4' C4' C3' O3' 188.7 178.8
O4' C4' C3' C2' 310.4 298.7
O4' C4' C3' H3' 69.9 58.7
C4' O4' C6' C1' 301.4 292.5
C4' O4' C6' H6'1 180.8 172.3
C4' O4' C6' H6'2 62.0 52.5
C3' C4' C5' H5' 301.4 300.3
C3' C4' C5' H5'' 182.2 60.2
C5' C4' C3' O4' 238.7 239.9
C5' C4' C3' H4' 118.7 119.9
O4' C4' C3' H4' 239.9 239.9
C3' C4' O4' C6' 54.3 67.6
O3' C3' C4' C2' 238.3 240.1
O3' C3' C4' H3' 118.8 120.2
C4' C3' O3' HO3' 180.0 180.0
C2' C3' C4' H3' 240.6 240.1
C4' C3' C2' C1' 52.6 53.8
C4' C3' C2' H2' 172.8 294.0
C4' C3' C2' H2'' 292.6 173.5
H4' C4' C5' H5' 60.0 60.2
H4' C4' C5' H5'' 300.9 180.1
C5' C4' H4' O4' 119.4 119.8
C5' C4' H4' C3' 240.9 240.1
O4' C4' H4' C3' 121.5 120.3
H4' C4' O4' C6' 294.4 307.5
H4' C4' C3' O3' 308.7 298.9
H4' C4' C3' C2' 70.5 58.8
H4' C4' C3' H3' 189.9 178.7
C6' O4' C4' C3' 54.3 67.6
C6' O4' C4' H4' 294.4 307.5
C2' C1' C6' O4' 57.1 61.3
O4' C6' C1' N9 295.9 301.3
O4' C6' C1' H1' 176.0 181.2
C1' C6' O4' H6'1 120.6 120.1
C1' C6' O4' H6'2 239.4 240.0
H6'1 C6' O4' H6'2 118.8 119.8
O3' C3' C4' H4' 308.7 298.9
C4' C3' O3' C2' 122.2 119.6
C4' C3' O3' H3' 241.3 239.8
C2' C3' O3' H3' 119.1 120.2
O3' C3' C2' C1' 174.1 173.6
O3' C3' C2' H2' 294.3 53.8
O3' C3' C2' H2'' 54.1 293.3
C2' C3' C4' H4' 70.5 58.8
C4' C3' C2' O3' 238.5 240.2
C4' C3' C2' H3' 119.3 119.9
O3' C3' C2' H3' 240.9 239.8
C2' C3' O3' HO3' 57.9 60.4
C1' C2' C3' H2' 239.8 119.8
C1' C2' C3' H2'' 120.0 240.3
C3' C2' C1' C6' 304.2 306.2
C3' C2' C1' N9 65.4 66.1
C3' C2' C1' H1' 185.4 186.4
H2' C2' C3' H2'' 240.2 120.5
H3' C3' C4' H4' 189.9 178.7
C4' C3' H3' O3' 119.4 120.1
C4' C3' H3' C2' 239.3 240.4
O3' C3' H3' C2' 119.9 120.2
H3' C3' O3' HO3' 298.8 300.2
H3' C3' C2' C1' 293.3 293.8
H3' C3' C2' H2' 53.5 174.1
H3' C3' C2' H2'' 173.2 53.5
HO3' O3' C3' C2' 57.9 60.4
HO3' O3' C3' H3' 298.8 300.2
O4' C6' C1' C2' 57.1 61.3
C1' C2' C3' H3' 293.3 293.8
C3' C2' C1' H2' 120.2 240.2
C3' C2' C1' H2'' 240.0 119.7
H2' C2' C1' H2'' 119.8 239.4
C6' C1' C2' N9 238.8 240.1
C6' C1' C2' H1' 118.8 119.9
C2' C1' C6' H6'1 177.7 181.4
C2' C1' C6' H6'2 296.5 301.2
N9 C1' C2' H1' 240.0 239.8
C2' C1' N9 C8 281.6 293.7
C2' C1' N9 C4 100.8 113.7
H2' C2' C3' H3' 53.5 174.1
C3' C2' H2' C1' 237.8 119.1
C3' C2' H2' H2'' 118.9 239.6
C1' C2' H2' H2'' 241.1 120.5
H2' C2' C1' C6' 184.0 66.0
H2' C2' C1' N9 305.1 185.9
H2' C2' C1' H1' 65.1 306.1
H2'' C2' C3' H3' 173.2 53.5
C3' C2' H2'' C1' 122.1 241.0
C3' C2' H2'' H2' 241.0 120.5
C1' C2' H2'' H2' 119.0 239.5
H2'' C2' C1' C6' 64.2 186.6
H2'' C2' C1' N9 185.4 306.5
H2'' C2' C1' H1' 305.3 66.7
O4' C6' C1' H6'1 239.5 239.9
O4' C6' C1' H6'2 120.7 120.1
C6' C1' C2' H2' 184.0 66.0
C6' C1' C2' H2'' 64.2 186.6
C2' C1' C6' N9 121.3 120.0
C2' C1' C6' H1' 241.1 240.1
N9 C1' C6' H1' 119.9 120.1
C6' C1' N9 C8 41.5 53.3
C6' C1' N9 C4 220.7 233.3
H6'1 C6' C1' H6'2 241.2 240.2
N9 C1' C2' H2' 305.1 185.9
N9 C1' C2' H2'' 185.4 306.5
C2' C1' N9 C6' 240.0 240.4
C2' C1' N9 H1' 120.1 120.3
C6' C1' N9 H1' 240.1 239.9
N9 C1' C6' H6'1 56.4 61.4
N9 C1' C6' H6'2 175.2 181.3
C8 N9 C1' C4 180.8 180.0
C1' N9 C8 N7 179.2 180.0
C1' N9 C8 H8 358.5 360.0
C1' N9 C4 C5 180.8 180.0
C1' N9 C4 N3 0.8 0.0
H1' C1' C2' H2' 65.1 306.1
H1' C1' C2' H2'' 305.3 66.7
C2' C1' H1' C6' 118.3 119.6
C2' C1' H1' N9 239.1 239.7
C6' C1' H1' N9 120.7 120.1
H1' C1' C6' H6'1 296.6 301.3
H1' C1' C6' H6'2 55.3 61.2
H1' C1' N9 C8 161.5 173.4
H1' C1' N9 C4 340.7 353.4
O4' C6' H6'1 C1' 121.4 120.3
O4' C6' H6'1 H6'2 240.6 240.1
H6'1 C6' C1' N9 56.4 61.4
H6'1 C6' C1' H1' 296.6 301.3
C1' C6' H6'1 H6'2 119.3 119.8
O4' C6' H6'2 C1' 238.6 239.7
O4' C6' H6'2 H6'1 119.3 119.9
H6'2 C6' C1' N9 175.2 181.3
H6'2 C6' C1' H1' 55.3 61.2
C1' C6' H6'2 H6'1 240.7 240.1
C8 N9 C1' H1' 161.5 173.4
C1' N9 C8 C4 179.3 180.0
C8 N9 C4 C5 0.1 360.0
C8 N9 C4 N3 180.2 180.0
N7 C8 N9 H8 180.6 180.0
N9 C8 N7 C5 0.1 0.0
C4 N9 C1' H1' 340.7 353.4
C1' N9 C4 C8 180.6 180.0
C4 N9 C8 N7 359.8 0.0
C4 N9 C8 H8 179.2 180.0
N7 C5 C4 N9 359.9 0.1
C6 C5 C4 N9 180.0 180.0
C5 C4 N9 N3 179.9 179.9
C2 N3 C4 N9 179.9 180.0
N7 C8 N9 C4 359.8 0.0
N9 C8 N7 H8 179.4 180.0
C8 N7 C5 C6 179.9 180.0
C8 N7 C5 C4 360.0 359.9
H8 C8 N9 C4 179.2 180.0
N9 C8 H8 N7 180.7 180.0
H8 C8 N7 C5 180.7 180.0
N9 C4 C5 N7 359.9 0.1
C5 N7 C8 H8 180.7 180.0
C6 C5 N7 C4 179.9 180.1
N7 C5 C6 O6 0.3 360.0
N7 C5 C6 N1 180.1 179.7
N7 C5 C4 N3 179.8 180.0
N9 C4 C5 C6 180.0 180.0
N7 C5 C6 C4 180.1 179.9
C6 C5 C4 N3 359.9 360.0
O6 C6 C5 N1 180.2 180.3
C5 C6 N1 C2 0.2 0.5
C5 C6 N1 H1 180.2 180.0
N9 C4 C5 N3 180.1 180.1
N7 C5 C4 C6 179.9 180.1
C4 C5 C6 O6 180.2 180.0
C4 C5 C6 N1 359.9 359.8
C2 N3 C4 C5 0.0 0.1
O6 C6 C5 C4 180.2 180.0
C5 C6 O6 N1 179.8 179.7
O6 C6 N1 C2 180.0 180.2
O6 C6 N1 H1 0.0 359.7
N1 C6 C5 C4 359.9 359.8
C5 C6 N1 O6 180.2 180.3
C2 N1 C6 H1 180.0 180.5
C6 N1 C2 N2 179.1 179.7
C6 N1 C2 N3 359.7 359.5
C6 N1 C2 H1 180.0 179.5
N2 C2 N1 N3 179.3 180.2
N1 C2 N2 H21 0.7 179.8
N1 C2 N2 H22 181.1 359.5
N1 C2 N3 C4 0.1 0.2
C6 N1 H1 C2 180.0 180.5
H1 N1 C2 N2 359.1 0.2
H1 N1 C2 N3 179.7 180.0
N2 C2 N1 H1 359.1 0.2
N1 C2 N2 N3 180.6 179.8
N2 C2 N3 C4 180.8 180.0
H21 N2 C2 H22 179.5 180.4
N9 C4 N3 C2 179.9 180.0
C5 C4 N3 C2 0.0 0.1
N3 C2 N1 H1 179.7 180.0
N1 C2 N3 N2 179.3 180.2
N3 C2 N2 H21 180.0 0.0
N3 C2 N2 H22 0.5 179.7
H21 N2 C2 N3 180.0 0.0
C2 N2 H21 H22 180.5 179.6
H22 N2 C2 N3 0.5 179.7
C2 N2 H22 H21 179.5 180.4
N9 C4 N3 C5 179.9 179.9