PDB Chemical Component 6HC

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 6HC

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.479 1.479
P OP2 1.478 1.609
P OP3 1.609 1.610
P O5' 1.607 1.609
OP2 HOP2 0.951 0.967
OP3 HOP3 0.951 0.967
O5' C5' 1.437 1.428
C5' C4' 1.516 1.529
C5' H5' 1.082 1.090
C5' H5'' 1.100 1.089
C4' O4' 1.441 1.427
C4' C3' 1.526 1.530
C4' H4' 1.090 1.090
O4' C6' 1.437 1.425
C3' O3' 1.427 1.429
C3' C2' 1.521 1.535
C3' H3' 1.091 1.090
O3' HO3' 0.950 0.966
C2' C1' 1.522 1.532
C2' H2' 1.095 1.089
C2' H2'' 1.094 1.091
C1' C6' 1.531 1.530
C1' N1 1.483 1.465
C1' H1' 1.092 1.090
C6' H6'1 1.087 1.090
C6' H6'2 1.088 1.090
N1 C2 1.383 1.345
N1 C6 1.369 1.361
C2 O2 1.227 1.220
C2 N3 1.360 1.331
N3 C4 1.337 1.327
C4 N4 1.331 1.376
C4 C5 1.430 1.409
N4 H41 1.008 0.970
N4 H42 1.012 0.969
C5 C6 1.346 1.355
C5 H5 1.090 1.080
C6 H6 1.090 1.080

Bond Angles for 6HC

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 120.1 109.4
OP1 P OP3 108.1 109.5
OP1 P O5' 108.6 109.5
OP2 P OP3 108.1 109.4
OP2 P O5' 108.3 109.5
P OP2 HOP2 120.2 106.9
OP3 P O5' 102.2 109.5
P OP3 HOP3 108.0 106.8
P O5' C5' 120.1 106.8
O5' C5' C4' 112.3 109.5
O5' C5' H5' 109.4 109.5
O5' C5' H5'' 108.6 109.5
C4' C5' H5' 106.8 109.4
C4' C5' H5'' 109.9 109.5
C5' C4' O4' 109.8 109.4
C5' C4' C3' 109.7 109.4
C5' C4' H4' 108.7 109.4
H5' C5' H5'' 109.8 109.4
O4' C4' C3' 110.7 109.8
O4' C4' H4' 109.0 109.4
C4' O4' C6' 115.3 107.6
C3' C4' H4' 108.8 109.4
C4' C3' O3' 110.0 109.5
C4' C3' C2' 110.3 109.0
C4' C3' H3' 108.7 109.5
O4' C6' C1' 111.3 109.8
O4' C6' H6'1 109.2 109.4
O4' C6' H6'2 109.4 109.4
O3' C3' C2' 110.2 109.6
O3' C3' H3' 108.8 109.6
C3' O3' HO3' 110.0 106.8
C2' C3' H3' 108.9 109.6
C3' C2' C1' 111.7 108.6
C3' C2' H2' 108.8 109.6
C3' C2' H2'' 108.7 109.6
C1' C2' H2' 108.8 109.7
C1' C2' H2'' 108.7 109.7
C2' C1' C6' 108.8 109.1
C2' C1' N1 110.4 109.6
C2' C1' H1' 108.8 109.6
H2' C2' H2'' 110.1 109.7
C6' C1' N1 111.3 109.6
C6' C1' H1' 108.7 109.6
C1' C6' H6'1 109.2 109.4
C1' C6' H6'2 109.3 109.4
N1 C1' H1' 108.8 109.5
C1' N1 C2 117.2 119.8
C1' N1 C6 121.5 119.8
H6'1 C6' H6'2 108.4 109.3
C2 N1 C6 121.3 120.4
N1 C2 O2 120.1 119.5
N1 C2 N3 118.4 121.1
N1 C6 C5 120.7 119.3
N1 C6 H6 119.8 120.4
O2 C2 N3 121.5 119.4
C2 N3 C4 121.0 120.7
N3 C4 N4 119.1 120.2
N3 C4 C5 121.0 119.7
N4 C4 C5 119.9 120.1
C4 N4 H41 120.0 119.9
C4 N4 H42 119.9 120.1
C4 C5 C6 117.6 118.9
C4 C5 H5 121.3 120.5
H41 N4 H42 120.1 120.0
C6 C5 H5 121.1 120.5
C5 C6 H6 119.5 120.3

Torsion Angles for 6HC

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3 235.4 119.9
OP2 P OP1 O5' 125.3 239.9
OP1 P OP2 HOP2 180.0 300.0
OP3 P OP1 O5' 249.9 120.0
OP1 P OP3 HOP3 180.0 180.0
OP1 P O5' C5' 187.5 60.0
OP1 P OP2 OP3 124.6 240.1
OP1 P OP2 O5' 234.6 120.0
OP3 P OP2 O5' 110.0 240.0
OP2 P OP3 HOP3 311.5 60.0
OP2 P O5' C5' 55.5 180.0
OP1 P OP3 OP2 228.5 119.9
OP1 P OP3 O5' 114.4 240.0
OP2 P OP3 O5' 245.9 120.1
OP3 P OP2 HOP2 55.5 60.0
OP3 P O5' C5' 301.5 300.0
OP1 P O5' OP2 132.0 240.0
OP1 P O5' OP3 246.0 120.0
OP2 P O5' OP3 114.0 240.0
O5' P OP2 HOP2 305.5 180.0
O5' P OP3 HOP3 65.6 300.0
P O5' C5' C4' 150.0 180.0
P O5' C5' H5' 268.4 60.0
P O5' C5' H5'' 28.2 300.0
HOP2 OP2 P OP3 55.5 60.0
HOP2 OP2 P O5' 305.5 180.0
HOP3 OP3 P O5' 65.6 300.0
C4' C5' O5' H5' 241.6 120.0
C4' C5' O5' H5'' 121.8 240.0
O5' C5' C4' O4' 301.7 60.0
O5' C5' C4' C3' 63.6 180.3
O5' C5' C4' H4' 182.4 300.1
H5' C5' O5' H5'' 240.2 120.0
O5' C5' C4' H5' 119.9 240.0
O5' C5' C4' H5'' 239.0 120.0
H5' C5' C4' H5'' 119.1 240.0
O4' C4' C5' C3' 238.1 239.7
O4' C4' C5' H4' 119.2 119.8
C5' C4' O4' C6' 177.2 187.7
C3' C4' C5' H4' 241.2 240.1
C5' C4' C3' O3' 63.9 58.8
C5' C4' C3' C2' 185.7 178.7
C5' C4' C3' H3' 304.9 298.6
O5' C5' H5' C4' 238.2 120.0
O5' C5' H5' H5'' 119.0 240.0
C4' C5' H5' H5'' 240.8 120.0
H5' C5' C4' O4' 181.7 180.0
H5' C5' C4' C3' 303.6 300.3
H5' C5' C4' H4' 62.5 60.2
O5' C5' H5'' C4' 123.2 239.9
O5' C5' H5'' H5' 240.5 120.0
C4' C5' H5'' H5' 117.2 240.1
H5'' C5' C4' O4' 62.7 300.0
H5'' C5' C4' C3' 184.6 60.3
H5'' C5' C4' H4' 303.4 180.1
O4' C4' C5' H5' 181.7 180.0
O4' C4' C5' H5'' 62.7 300.0
C5' C4' O4' C3' 121.3 120.1
C5' C4' O4' H4' 240.9 240.1
C3' C4' O4' H4' 119.7 120.1
O4' C4' C3' O3' 185.3 178.8
O4' C4' C3' C2' 307.0 298.8
O4' C4' C3' H3' 66.3 58.6
C4' O4' C6' C1' 302.7 292.4
C4' O4' C6' H6'1 182.0 172.3
C4' O4' C6' H6'2 63.5 52.5
C3' C4' C5' H5' 303.6 300.3
C3' C4' C5' H5'' 184.6 60.3
C5' C4' C3' O4' 238.6 239.9
C5' C4' C3' H4' 118.8 119.9
O4' C4' C3' H4' 240.2 239.9
C3' C4' O4' C6' 55.9 67.6
O3' C3' C4' C2' 238.3 240.1
O3' C3' C4' H3' 119.0 120.2
C4' C3' O3' HO3' 180.0 180.0
C2' C3' C4' H3' 240.7 240.1
C4' C3' C2' C1' 54.7 53.7
C4' C3' C2' H2' 174.9 293.9
C4' C3' C2' H2'' 294.8 173.5
H4' C4' C5' H5' 62.5 60.2
H4' C4' C5' H5'' 303.4 180.1
C5' C4' H4' O4' 119.7 119.9
C5' C4' H4' C3' 240.6 240.2
O4' C4' H4' C3' 120.9 120.3
H4' C4' O4' C6' 296.2 307.5
H4' C4' C3' O3' 305.1 298.9
H4' C4' C3' C2' 66.8 58.8
H4' C4' C3' H3' 186.1 178.7
C6' O4' C4' C3' 55.9 67.6
C6' O4' C4' H4' 296.2 307.5
C2' C1' C6' O4' 54.8 61.3
O4' C6' C1' N1 292.9 301.4
O4' C6' C1' H1' 173.0 181.3
C1' C6' O4' H6'1 120.7 120.1
C1' C6' O4' H6'2 239.2 239.9
H6'1 C6' O4' H6'2 118.5 119.8
O3' C3' C4' H4' 305.1 298.9
C4' C3' O3' C2' 121.8 119.6
C4' C3' O3' H3' 241.0 239.8
C2' C3' O3' H3' 119.3 120.2
O3' C3' C2' C1' 176.3 173.6
O3' C3' C2' H2' 296.5 53.8
O3' C3' C2' H2'' 56.4 293.4
C2' C3' C4' H4' 66.8 58.8
C4' C3' C2' O3' 238.4 240.1
C4' C3' C2' H3' 119.2 119.9
O3' C3' C2' H3' 240.8 239.8
C2' C3' O3' HO3' 58.3 60.5
C1' C2' C3' H2' 239.9 119.8
C1' C2' C3' H2'' 120.0 240.2
C3' C2' C1' C6' 305.0 306.3
C3' C2' C1' N1 67.4 66.2
C3' C2' C1' H1' 186.8 186.4
H2' C2' C3' H2'' 240.1 120.4
H3' C3' C4' H4' 186.1 178.7
C4' C3' H3' O3' 119.8 120.2
C4' C3' H3' C2' 239.9 240.4
O3' C3' H3' C2' 120.1 120.2
H3' C3' O3' HO3' 299.0 300.2
H3' C3' C2' C1' 295.6 293.8
H3' C3' C2' H2' 55.7 174.0
H3' C3' C2' H2'' 175.6 53.6
HO3' O3' C3' C2' 58.3 60.5
HO3' O3' C3' H3' 299.0 300.2
O4' C6' C1' C2' 54.8 61.3
C1' C2' C3' H3' 295.6 293.8
C3' C2' C1' H2' 120.1 240.2
C3' C2' C1' H2'' 240.1 119.7
H2' C2' C1' H2'' 120.0 239.5
C6' C1' C2' N1 237.6 240.1
C6' C1' C2' H1' 118.2 119.9
C2' C1' C6' H6'1 175.5 181.5
C2' C1' C6' H6'2 293.9 301.2
N1 C1' C2' H1' 240.6 239.8
C2' C1' N1 C2 102.9 63.1
C2' C1' N1 C6 282.5 243.0
H2' C2' C3' H3' 55.7 174.0
C3' C2' H2' C1' 238.1 119.1
C3' C2' H2' H2'' 119.0 239.6
C1' C2' H2' H2'' 240.9 120.5
H2' C2' C1' C6' 184.9 66.0
H2' C2' C1' N1 307.4 186.0
H2' C2' C1' H1' 66.7 306.1
H2'' C2' C3' H3' 175.6 53.6
C3' C2' H2'' C1' 121.8 240.9
C3' C2' H2'' H2' 241.0 120.4
C1' C2' H2'' H2' 119.2 239.5
H2'' C2' C1' C6' 64.9 186.6
H2'' C2' C1' N1 187.4 306.5
H2'' C2' C1' H1' 306.7 66.7
O4' C6' C1' H6'1 239.3 239.9
O4' C6' C1' H6'2 120.9 120.1
C6' C1' C2' H2' 184.9 66.0
C6' C1' C2' H2'' 64.9 186.6
C2' C1' C6' N1 121.9 119.9
C2' C1' C6' H1' 241.7 240.1
N1 C1' C6' H1' 119.8 120.2
C6' C1' N1 C2 223.8 182.7
C6' C1' N1 C6 43.4 2.6
H6'1 C6' C1' H6'2 241.6 240.2
N1 C1' C2' H2' 307.4 186.0
N1 C1' C2' H2'' 187.4 306.5
C2' C1' N1 C6' 239.1 240.4
C2' C1' N1 H1' 119.3 120.2
C6' C1' N1 H1' 240.3 239.8
N1 C1' C6' H6'1 53.6 61.5
N1 C1' C6' H6'2 172.0 181.3
C2 N1 C1' C6 180.4 180.1
C1' N1 C2 O2 360.0 359.9
C1' N1 C2 N3 179.6 180.0
C1' N1 C6 C5 180.3 179.7
C1' N1 C6 H6 0.3 0.0
H1' C1' C2' H2' 66.7 306.1
H1' C1' C2' H2'' 306.7 66.7
C2' C1' H1' C6' 118.2 119.6
C2' C1' H1' N1 239.6 239.8
C6' C1' H1' N1 121.4 120.2
H1' C1' C6' H6'1 293.7 301.4
H1' C1' C6' H6'2 52.1 61.1
H1' C1' N1 C2 343.5 302.9
H1' C1' N1 C6 163.2 122.8
O4' C6' H6'1 C1' 121.9 120.3
O4' C6' H6'1 H6'2 240.9 240.2
H6'1 C6' C1' N1 53.6 61.5
H6'1 C6' C1' H1' 293.7 301.4
C1' C6' H6'1 H6'2 119.0 119.8
O4' C6' H6'2 C1' 237.9 239.6
O4' C6' H6'2 H6'1 119.0 119.8
H6'2 C6' C1' N1 172.0 181.3
H6'2 C6' C1' H1' 52.1 61.1
C1' C6' H6'2 H6'1 241.1 240.2
C2 N1 C1' H1' 343.5 302.9
C1' N1 C2 C6 179.6 179.9
C2 N1 C6 C5 359.9 359.6
C2 N1 C6 H6 179.9 180.0
O2 C2 N1 N3 180.4 180.0
N1 C2 N3 C4 0.0 0.0
C6 N1 C1' H1' 163.2 122.8
C1' N1 C6 C2 180.4 180.1
C6 N1 C2 O2 180.4 180.0
C6 N1 C2 N3 360.0 0.0
C4 C5 C6 N1 0.2 0.6
N1 C6 C5 H5 179.9 180.0
C5 C6 N1 H6 180.0 179.7
O2 C2 N1 C6 180.4 180.0
N1 C2 O2 N3 179.6 180.0
O2 C2 N3 C4 179.6 180.1
N3 C2 N1 C6 360.0 0.0
N1 C2 N3 O2 180.4 180.0
C2 N3 C4 N4 179.8 180.0
C2 N3 C4 C5 0.1 0.2
N4 C4 N3 C5 179.7 179.8
N3 C4 N4 H41 180.1 359.9
N3 C4 N4 H42 0.9 179.7
N3 C4 C5 C6 359.8 359.5
N3 C4 C5 H5 180.1 180.0
N3 C4 N4 C5 180.3 180.2
N4 C4 C5 C6 180.1 179.7
N4 C4 C5 H5 0.4 0.2
H41 N4 C4 H42 179.2 180.2
N1 C6 C5 C4 0.2 0.6
N3 C4 C5 N4 179.7 179.8
C5 C4 N4 H41 359.8 179.7
C5 C4 N4 H42 180.6 359.5
C6 C5 C4 H5 179.7 179.5
C4 C5 C6 H6 180.3 180.3
H41 N4 C4 C5 359.8 179.7
C4 N4 H41 H42 180.8 179.8
H42 N4 C4 C5 180.6 359.5
C4 N4 H42 H41 179.2 180.2
N1 C6 C5 H6 180.0 180.3
C4 C5 C6 H5 180.3 180.5
C4 C5 H5 C6 179.7 179.5
H5 C5 C6 H6 359.9 359.7
N1 C6 H6 C5 180.0 179.7
H6 C6 C5 H5 359.9 359.7