PDB Chemical Component 6HA

Ideal Model

Chemical Description

Name 1',5'-ANHYDRO-2',3'-DIDEOXY-2'-(ADENIN-9-YL)-6'-O-PHOSPHORYL-D-ARABINO-HEXITOL
Formula C11 H16 N5 O6 P
Formal charge 0
Molecular weight 345.248 g/mol
Component type DNA LINKING
Nonstandard Parent Id DA

Chemical features

Atom count 39
Chiral atom count 3
Chiral atoms C4' C3' C1'
Observed leaving atoms OP3 HO3'
Bond count 41
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 2-(6-amino-9H-purin-9-yl)-1,5-anhydro-2,3-dideoxy-6-O-phosphono-D-arabino-hexitol
Systematic name (OpenEye OEToolkits) [(2R,3S,5S)-5-(6-aminopurin-9-yl)-3-hydroxy-oxan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) Nc1ncnc2n(cnc12)[C@@H]3CO[C@H](CO[P](O)(O)=O)[C@@H](O)C3
SMILES (CACTVS) Nc1ncnc2n(cnc12)[CH]3CO[CH](CO[P](O)(O)=O)[CH](O)C3
Stereo SMILES (OpenEye) c1nc(c2c(n1)n(cn2)[C@H]3C[C@@H]([C@H](OC3)COP(=O)(O)O)O)N
InChI descriptor InChI=1S/C11H16N5O6P/c12-10-9-11(14-4-13-10)16(5-15-9)6-1-7(17)8(21-2-6)3-22-23(18,19)20/h4-8,17H,1-3H2,(H2,12,13,14)(H2,18,19,20)/t6-,7-,8+/m0/s1
InChIKey descriptor YTRYYFQQGYRCHL-BIIVOSGPSA-N

Status Information

Last modified 2011-06-04
Created 1999-07-23
Release status REL
Model PDB code 1EJZ
Processing site RCSB