PDB Chemical Component 6HA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 6HA

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.479 1.479
P OP2 1.480 1.609
P OP3 1.607 1.610
P O5' 1.609 1.610
OP2 HOP2 0.950 0.967
OP3 HOP3 0.950 0.967
O5' C5' 1.439 1.428
C5' C4' 1.516 1.530
C5' H5' 1.082 1.089
C5' H5'' 1.101 1.089
C4' O4' 1.447 1.426
C4' C3' 1.531 1.529
C4' H4' 1.092 1.090
O4' C6' 1.439 1.426
C3' O3' 1.424 1.429
C3' C2' 1.517 1.534
C3' H3' 1.091 1.091
O3' HO3' 0.950 0.967
C2' C1' 1.512 1.532
C2' H2' 1.094 1.090
C2' H2'' 1.095 1.090
C1' C6' 1.524 1.530
C1' N9 1.480 1.465
C1' H1' 1.090 1.090
C6' H6'1 1.087 1.090
C6' H6'2 1.087 1.090
N9 C8 1.359 1.362
N9 C4 1.374 1.372
C8 N7 1.288 1.302
C8 H8 1.087 1.081
N7 C5 1.395 1.354
C5 C6 1.394 1.405
C5 C4 1.378 1.404
C6 N6 1.332 1.384
C6 N1 1.342 1.329
N6 H61 1.010 0.970
N6 H62 1.011 0.969
N1 C2 1.335 1.320
C2 N3 1.329 1.316
C2 H2 1.090 1.081
N3 C4 1.347 1.329

Bond Angles for 6HA

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 120.0 109.5
OP1 P OP3 108.2 109.5
OP1 P O5' 108.3 109.4
OP2 P OP3 108.2 109.4
OP2 P O5' 108.4 109.5
P OP2 HOP2 120.0 106.8
OP3 P O5' 102.3 109.5
P OP3 HOP3 108.2 106.8
P O5' C5' 121.3 106.8
O5' C5' C4' 111.5 109.5
O5' C5' H5' 109.6 109.5
O5' C5' H5'' 108.7 109.5
C4' C5' H5' 107.0 109.4
C4' C5' H5'' 110.2 109.4
C5' C4' O4' 109.1 109.4
C5' C4' C3' 109.1 109.4
C5' C4' H4' 109.0 109.4
H5' C5' H5'' 109.9 109.5
O4' C4' C3' 111.5 109.8
O4' C4' H4' 109.2 109.4
C4' O4' C6' 116.3 107.6
C3' C4' H4' 108.9 109.4
C4' C3' O3' 110.5 109.5
C4' C3' C2' 110.8 109.1
C4' C3' H3' 108.4 109.5
O4' C6' C1' 110.8 109.8
O4' C6' H6'1 109.3 109.4
O4' C6' H6'2 109.4 109.5
O3' C3' C2' 110.2 109.6
O3' C3' H3' 108.5 109.5
C3' O3' HO3' 110.5 106.8
C2' C3' H3' 108.6 109.5
C3' C2' C1' 110.6 108.6
C3' C2' H2' 108.9 109.6
C3' C2' H2'' 108.9 109.6
C1' C2' H2' 109.0 109.6
C1' C2' H2'' 109.1 109.7
C2' C1' C6' 107.6 109.1
C2' C1' N9 110.0 109.6
C2' C1' H1' 109.5 109.5
H2' C2' H2'' 110.3 109.7
C6' C1' N9 110.6 109.5
C6' C1' H1' 109.6 109.6
C1' C6' H6'1 109.4 109.4
C1' C6' H6'2 109.4 109.4
N9 C1' H1' 109.5 109.5
C1' N9 C8 129.6 126.3
C1' N9 C4 127.0 126.3
H6'1 C6' H6'2 108.5 109.3
C8 N9 C4 103.4 107.5
N9 C8 N7 117.7 110.0
N9 C8 H8 121.2 125.0
N9 C4 C5 106.4 106.0
N9 C4 N3 126.5 134.9
N7 C8 H8 121.1 125.0
C8 N7 C5 101.5 109.4
N7 C5 C6 132.4 134.7
N7 C5 C4 111.0 107.2
C6 C5 C4 116.6 118.2
C5 C6 N6 123.2 120.7
C5 C6 N1 117.4 118.4
C5 C4 N3 127.1 119.1
N6 C6 N1 119.4 120.8
C6 N6 H61 119.9 120.0
C6 N6 H62 120.1 120.0
C6 N1 C2 120.6 121.2
H61 N6 H62 120.0 120.0
N1 C2 N3 127.1 122.5
N1 C2 H2 116.5 118.7
N3 C2 H2 116.4 118.8
C2 N3 C4 111.2 120.6

Torsion Angles for 6HA

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3 235.3 120.0
OP2 P OP1 O5' 125.2 240.0
OP1 P OP2 HOP2 180.0 300.0
OP3 P OP1 O5' 249.8 120.0
OP1 P OP3 HOP3 180.0 180.0
OP1 P O5' C5' 178.6 60.0
OP1 P OP2 OP3 124.7 239.9
OP1 P OP2 O5' 234.9 119.9
OP3 P OP2 O5' 110.2 240.0
OP2 P OP3 HOP3 311.5 59.9
OP2 P O5' C5' 46.9 180.0
OP1 P OP3 OP2 228.6 120.0
OP1 P OP3 O5' 114.2 240.0
OP2 P OP3 O5' 245.7 120.0
OP3 P OP2 HOP2 55.3 60.1
OP3 P O5' C5' 292.7 300.0
OP1 P O5' OP2 131.7 240.0
OP1 P O5' OP3 245.8 120.1
OP2 P O5' OP3 114.1 240.0
O5' P OP2 HOP2 305.1 180.0
O5' P OP3 HOP3 65.8 299.9
P O5' C5' C4' 164.4 180.0
P O5' C5' H5' 282.7 60.0
P O5' C5' H5'' 42.7 300.0
HOP2 OP2 P OP3 55.3 60.1
HOP2 OP2 P O5' 305.1 180.0
HOP3 OP3 P O5' 65.8 299.9
C4' C5' O5' H5' 241.7 120.0
C4' C5' O5' H5'' 121.7 240.0
O5' C5' C4' O4' 296.3 60.0
O5' C5' C4' C3' 58.3 180.3
O5' C5' C4' H4' 177.1 300.2
H5' C5' O5' H5'' 239.9 120.0
O5' C5' C4' H5' 119.8 240.0
O5' C5' C4' H5'' 239.2 120.1
H5' C5' C4' H5'' 119.4 240.1
O4' C4' C5' C3' 238.0 239.7
O4' C4' C5' H4' 119.2 119.8
C5' C4' O4' C6' 171.1 187.7
C3' C4' C5' H4' 241.2 240.1
C5' C4' C3' O3' 68.0 58.7
C5' C4' C3' C2' 190.4 178.7
C5' C4' C3' H3' 309.3 298.6
O5' C5' H5' C4' 239.0 120.0
O5' C5' H5' H5'' 119.3 239.9
C4' C5' H5' H5'' 240.4 119.9
H5' C5' C4' O4' 176.5 180.0
H5' C5' C4' C3' 298.5 300.3
H5' C5' C4' H4' 57.3 60.2
O5' C5' H5'' C4' 122.4 239.9
O5' C5' H5'' H5' 240.1 120.0
C4' C5' H5'' H5' 117.6 240.1
H5'' C5' C4' O4' 57.1 299.9
H5'' C5' C4' C3' 179.1 60.2
H5'' C5' C4' H4' 297.9 180.1
O4' C4' C5' H5' 176.5 180.0
O4' C4' C5' H5'' 57.1 299.9
C5' C4' O4' C3' 120.6 120.1
C5' C4' O4' H4' 240.9 240.2
C3' C4' O4' H4' 120.4 120.1
O4' C4' C3' O3' 188.6 178.8
O4' C4' C3' C2' 310.9 298.8
O4' C4' C3' H3' 69.9 58.7
C4' O4' C6' C1' 304.1 292.4
C4' O4' C6' H6'1 183.5 172.3
C4' O4' C6' H6'2 64.8 52.5
C3' C4' C5' H5' 298.5 300.3
C3' C4' C5' H5'' 179.1 60.2
C5' C4' C3' O4' 239.4 239.9
C5' C4' C3' H4' 118.8 119.9
O4' C4' C3' H4' 239.4 239.9
C3' C4' O4' C6' 50.5 67.6
O3' C3' C4' C2' 237.7 240.0
O3' C3' C4' H3' 118.7 120.1
C4' C3' O3' HO3' 180.1 180.0
C2' C3' C4' H3' 241.0 240.1
C4' C3' C2' C1' 56.0 53.7
C4' C3' C2' H2' 175.8 294.0
C4' C3' C2' H2'' 296.1 173.5
H4' C4' C5' H5' 57.3 60.2
H4' C4' C5' H5'' 297.9 180.1
C5' C4' H4' O4' 119.1 119.8
C5' C4' H4' C3' 241.1 240.1
O4' C4' H4' C3' 122.0 120.3
H4' C4' O4' C6' 290.1 307.5
H4' C4' C3' O3' 309.2 298.8
H4' C4' C3' C2' 71.5 58.8
H4' C4' C3' H3' 190.5 178.7
C6' O4' C4' C3' 50.5 67.6
C6' O4' C4' H4' 290.1 307.5
C2' C1' C6' O4' 58.6 61.3
O4' C6' C1' N9 298.4 301.4
O4' C6' C1' H1' 177.6 181.2
C1' C6' O4' H6'1 120.5 120.1
C1' C6' O4' H6'2 239.3 239.9
H6'1 C6' O4' H6'2 118.7 119.8
O3' C3' C4' H4' 309.2 298.8
C4' C3' O3' C2' 122.7 119.7
C4' C3' O3' H3' 241.4 239.9
C2' C3' O3' H3' 118.7 120.2
O3' C3' C2' C1' 178.6 173.6
O3' C3' C2' H2' 298.3 53.9
O3' C3' C2' H2'' 58.7 293.4
C2' C3' C4' H4' 71.5 58.8
C4' C3' C2' O3' 237.5 240.1
C4' C3' C2' H3' 118.8 119.9
O3' C3' C2' H3' 241.4 239.8
C2' C3' O3' HO3' 57.4 60.4
C1' C2' C3' H2' 240.2 119.7
C1' C2' C3' H2'' 119.9 240.2
C3' C2' C1' C6' 300.0 306.3
C3' C2' C1' N9 60.6 66.2
C3' C2' C1' H1' 180.9 186.4
H2' C2' C3' H2'' 239.7 120.5
H3' C3' C4' H4' 190.5 178.7
C4' C3' H3' O3' 120.0 120.1
C4' C3' H3' C2' 239.6 240.4
O3' C3' H3' C2' 119.7 120.2
H3' C3' O3' HO3' 298.7 300.2
H3' C3' C2' C1' 297.2 293.8
H3' C3' C2' H2' 56.9 174.1
H3' C3' C2' H2'' 177.3 53.6
HO3' O3' C3' C2' 57.4 60.4
HO3' O3' C3' H3' 298.7 300.2
O4' C6' C1' C2' 58.6 61.3
C1' C2' C3' H3' 297.2 293.8
C3' C2' C1' H2' 119.7 240.3
C3' C2' C1' H2'' 240.2 119.8
H2' C2' C1' H2'' 120.5 239.5
C6' C1' C2' N9 239.4 240.1
C6' C1' C2' H1' 119.0 119.9
C2' C1' C6' H6'1 179.1 181.4
C2' C1' C6' H6'2 297.9 301.2
N9 C1' C2' H1' 239.6 239.8
C2' C1' N9 C8 284.5 293.7
C2' C1' N9 C4 102.3 113.7
H2' C2' C3' H3' 56.9 174.1
C3' C2' H2' C1' 239.2 119.1
C3' C2' H2' H2'' 119.4 239.6
C1' C2' H2' H2'' 240.2 120.5
H2' C2' C1' C6' 180.3 66.0
H2' C2' C1' N9 300.9 185.9
H2' C2' C1' H1' 61.3 306.1
H2'' C2' C3' H3' 177.3 53.6
C3' C2' H2'' C1' 120.8 240.9
C3' C2' H2'' H2' 240.6 120.4
C1' C2' H2'' H2' 119.7 239.5
H2'' C2' C1' C6' 59.8 186.6
H2'' C2' C1' N9 180.3 306.5
H2'' C2' C1' H1' 300.7 66.6
O4' C6' C1' H6'1 239.5 239.9
O4' C6' C1' H6'2 120.7 120.1
C6' C1' C2' H2' 180.3 66.0
C6' C1' C2' H2'' 59.8 186.6
C2' C1' C6' N9 120.2 119.9
C2' C1' C6' H1' 241.0 240.1
N9 C1' C6' H1' 120.8 120.2
C6' C1' N9 C8 43.2 53.3
C6' C1' N9 C4 221.1 233.3
H6'1 C6' C1' H6'2 241.2 240.3
N9 C1' C2' H2' 300.9 185.9
N9 C1' C2' H2'' 180.3 306.5
C2' C1' N9 C6' 241.2 240.4
C2' C1' N9 H1' 120.4 120.2
C6' C1' N9 H1' 239.2 239.8
N9 C1' C6' H6'1 58.9 61.5
N9 C1' C6' H6'2 177.7 181.3
C8 N9 C1' C4 182.1 180.0
C1' N9 C8 N7 178.2 180.0
C1' N9 C8 H8 359.0 359.9
C1' N9 C4 C5 181.8 180.2
C1' N9 C4 N3 1.7 0.0
H1' C1' C2' H2' 61.3 306.1
H1' C1' C2' H2'' 300.7 66.6
C2' C1' H1' C6' 117.8 119.6
C2' C1' H1' N9 239.3 239.8
C6' C1' H1' N9 121.5 120.2
H1' C1' C6' H6'1 298.1 301.3
H1' C1' C6' H6'2 56.9 61.1
H1' C1' N9 C8 164.1 173.5
H1' C1' N9 C4 341.9 353.5
O4' C6' H6'1 C1' 121.4 120.3
O4' C6' H6'1 H6'2 240.7 240.1
H6'1 C6' C1' N9 58.9 61.5
H6'1 C6' C1' H1' 298.1 301.3
C1' C6' H6'1 H6'2 119.3 119.8
O4' C6' H6'2 C1' 238.5 239.6
O4' C6' H6'2 H6'1 119.2 119.8
H6'2 C6' C1' N9 177.7 181.3
H6'2 C6' C1' H1' 56.9 61.1
C1' C6' H6'2 H6'1 240.7 240.2
C8 N9 C1' H1' 164.1 173.5
C1' N9 C8 C4 178.2 180.0
C8 N9 C4 C5 0.1 0.2
C8 N9 C4 N3 180.0 180.0
N7 C8 N9 H8 179.3 180.1
N9 C8 N7 C5 359.9 359.8
C4 N9 C1' H1' 341.9 353.5
C1' N9 C4 C8 181.7 180.0
C4 N9 C8 N7 0.0 0.0
C4 N9 C8 H8 180.8 179.9
N7 C5 C4 N9 359.8 359.7
C6 C5 C4 N9 179.9 180.4
C5 C4 N9 N3 180.1 180.2
C2 N3 C4 N9 180.2 180.0
N7 C8 N9 C4 0.0 0.0
N9 C8 N7 H8 180.7 179.9
C8 N7 C5 C6 180.0 179.5
C8 N7 C5 C4 0.1 0.4
H8 C8 N9 C4 180.8 179.9
N9 C8 H8 N7 179.2 180.1
H8 C8 N7 C5 179.2 179.8
N9 C4 C5 N7 359.8 359.7
C5 N7 C8 H8 179.2 179.8
C6 C5 N7 C4 179.9 179.1
N7 C5 C6 N6 0.4 0.7
N7 C5 C6 N1 180.1 180.4
N7 C5 C4 N3 180.0 179.8
N9 C4 C5 C6 179.9 180.4
N7 C5 C6 C4 180.1 180.9
C6 C5 C4 N3 0.1 0.5
N6 C6 C5 N1 180.3 180.3
C5 C6 N6 H61 360.0 179.7
C5 C6 N6 H62 180.3 359.4
C5 C6 N1 C2 359.9 0.4
N9 C4 C5 N3 179.9 179.8
N7 C5 C4 C6 179.9 179.3
C4 C5 C6 N6 180.3 179.8
C4 C5 C6 N1 360.0 359.4
C2 N3 C4 C5 360.0 359.8
N6 C6 C5 C4 180.3 179.8
C5 C6 N6 N1 179.7 179.6
N6 C6 N1 C2 179.6 180.0
H61 N6 C6 H62 179.7 180.3
N1 C6 C5 C4 360.0 359.4
C5 C6 N1 N6 180.3 180.3
N1 C6 N6 H61 180.3 0.1
N1 C6 N6 H62 0.6 179.8
C6 N1 C2 N3 0.2 359.9
C6 N1 C2 H2 180.0 179.9
H61 N6 C6 N1 180.3 0.1
C6 N6 H61 H62 180.3 179.7
H62 N6 C6 N1 0.6 179.8
C6 N6 H62 H61 179.7 180.3
N3 C2 N1 H2 180.2 180.0
N1 C2 N3 C4 359.9 0.0
N9 C4 N3 C2 180.2 180.0
C5 C4 N3 C2 360.0 359.8
N1 C2 N3 H2 179.8 180.0
N1 C2 H2 N3 180.2 180.0
H2 C2 N3 C4 180.1 180.0
N9 C4 N3 C5 180.2 180.2
C4 N3 C2 H2 180.1 180.0