Atom Nomenclature for 6GZ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 6GZ

Atom Name (V3) Atom Name (V2)
BR BR1
C16 C1
C15 C2
C7 C3
C8 C4
N N1
C13 C5
C14 C6
O2 O1
O1 O2
C12 C7
C11 C8
C10 C9
C9 C10
C6 C11
C5 C12
C4 C13
O O3
C3 C14
C2 C15
C17 C16
C18 C17
C19 C18
C20 C19
C1 C20
C C21
C21 C22
C26 C23
C25 C24
C24 C25
C23 C26
C22 C27
H1 H1
H2 H2
H3 H3
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29