PDB Chemical Component 6GY

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 6GY

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C28 N25 1.477 1.468
N25 C26 1.488 1.469
N25 C24 1.495 1.470
C26 C27 1.549 1.531
C27 N22 1.502 1.469
C24 C23 1.546 1.530
C23 N22 1.503 1.469
N22 C19 1.499 1.469
C20 C19 1.552 1.531
C20 C21 1.554 1.530
C19 C18 1.545 1.532
C21 N16 1.497 1.468
C18 C17 1.543 1.530
N16 C17 1.496 1.469
N16 C11 1.378 1.399
C34 C33 1.411 1.382
C34 C35 1.413 1.381
C33 C32 1.420 1.383
C11 C12 1.422 1.388
C11 C10 1.422 1.389
C12 C13 1.433 1.385
C35 C30 1.440 1.389
C10 C9 1.414 1.382
C32 C31 1.421 1.381
C13 O14 1.408 1.359
C13 C8 1.428 1.393
O14 C15 1.430 1.429
C30 C31 1.432 1.389
C30 N29 1.378 1.397
C9 C8 1.430 1.387
C8 N7 1.393 1.403
C31 P1 1.846 1.814
N29 C2 1.392 1.387
N3 C2 1.359 1.329
N3 C4 1.343 1.324
N7 C4 1.369 1.384
C2 C1 1.418 1.397
C4 N5 1.345 1.325
C3 P1 1.866 1.824
P1 O41 1.482 1.480
P1 C37 1.857 1.823
C1 C6 1.407 1.382
C1 CL 1.739 1.736
N5 C6 1.366 1.326
C3 H1 1.100 1.090
C3 H2 1.100 1.090
C3 H3 1.100 1.090
C6 H4 1.080 1.080
C9 H5 1.080 1.081
C10 H6 1.080 1.080
C12 H7 1.080 1.080
C15 H8 1.100 1.090
C15 H9 1.100 1.091
C15 H10 1.100 1.091
C18 H11 1.100 1.090
C18 H12 1.100 1.090
C26 H13 1.100 1.090
C26 H14 1.101 1.089
N7 H15 1.000 0.971
C17 H16 1.100 1.090
C17 H17 1.100 1.090
C19 H18 1.100 1.090
C20 H19 1.101 1.090
C20 H20 1.100 1.090
C21 H21 1.099 1.090
C21 H22 1.100 1.090
C23 H24 1.100 1.090
C23 H25 1.100 1.090
C24 H26 1.100 1.090
C24 H27 1.100 1.091
C27 H29 1.101 1.090
C27 H30 1.100 1.090
C28 H31 1.100 1.090
C28 H32 1.100 1.090
C28 H33 1.100 1.089
N29 H34 1.000 0.970
C32 H35 1.080 1.080
C33 H36 1.080 1.080
C34 H37 1.080 1.080
C35 H38 1.080 1.080
C37 H39 1.100 1.090
C37 H40 1.100 1.091
C37 H41 1.100 1.090

Bond Angles for 6GY

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N25 C26 C27 112.1 109.4
N25 C26 H13 108.8 109.4
N25 C26 H14 108.8 109.5
N25 C24 H26 109.1 109.5
N25 C24 H27 109.1 109.4
C26 C27 N22 111.8 109.3
C27 C26 H13 108.8 109.4
C27 C26 H14 108.8 109.5
C26 C27 H29 108.9 109.6
C26 C27 H30 108.9 109.5
C24 C23 H24 109.0 109.5
C24 C23 H25 109.0 109.5
N22 C19 H18 105.0 109.5
C20 C19 H18 104.4 109.5
C21 C20 H19 109.4 109.4
C21 C20 H20 109.4 109.5
C20 C21 H21 109.2 109.5
C20 C21 H22 109.3 109.5
C19 C18 H11 109.3 109.5
C19 C18 H12 109.3 109.5
C18 C17 N16 111.8 109.6
C17 C18 H11 109.3 109.5
C17 C18 H12 109.3 109.5
C18 C17 H16 108.9 109.5
C18 C17 H17 108.8 109.5
N16 C17 H16 108.9 109.4
N16 C17 H17 108.9 109.5
C34 C33 H36 119.8 119.9
C35 C34 H37 120.2 119.9
C34 C35 H38 119.6 120.1
C33 C32 H35 119.6 119.9
C11 C12 C13 120.8 120.0
C11 C12 H7 119.6 120.0
C11 C10 H6 120.1 120.0
C12 C13 O14 125.1 120.0
C12 C13 C8 119.1 119.9
C13 C12 H7 119.6 120.0
C10 C9 C8 121.0 120.1
C10 C9 H5 119.5 120.0
C32 C31 P1 118.5 120.1
O14 C13 C8 115.8 120.1
C13 O14 C15 118.7 117.0
C9 C8 C13 119.5 119.9
C13 C8 N7 116.3 120.0
O14 C15 H8 109.5 109.5
O14 C15 H9 109.5 109.5
O14 C15 H10 109.5 109.5
C30 C31 P1 122.2 120.0
C30 N29 H34 116.6 120.1
C9 C8 N7 124.1 120.0
C8 C9 H5 119.5 119.9
C8 N7 H15 116.2 120.0
C3 P1 C31 110.3 109.5
C31 P1 O41 111.2 109.5
C31 P1 C37 111.5 109.5
N3 C4 N5 124.5 121.7
C2 C1 C6 117.2 118.5
C2 C1 CL 123.0 120.8
C4 N5 C6 117.1 120.9
C3 P1 O41 109.3 109.5
C3 P1 C37 101.5 109.4
P1 C3 H1 109.5 109.5
P1 C3 H2 109.5 109.5
P1 C3 H3 109.4 109.4
C37 P1 O41 112.5 109.5
P1 C37 H39 109.5 109.5
P1 C37 H40 109.5 109.4
P1 C37 H41 109.5 109.5
C6 C1 CL 119.8 120.8
C1 C6 H4 119.0 120.3
N5 C6 H4 119.0 120.4
H1 C3 H2 109.5 109.5
H1 C3 H3 109.5 109.5
H2 C3 H3 109.5 109.5
H8 C15 H9 109.5 109.5
H8 C15 H10 109.4 109.5
H9 C15 H10 109.5 109.5
H11 C18 H12 109.5 109.5
H13 C26 H14 109.5 109.5
H16 C17 H17 109.5 109.4
H19 C20 H20 109.5 109.5
H21 C21 H22 109.5 109.4
H24 C23 H25 109.5 109.5
H26 C24 H27 109.5 109.5
H29 C27 H30 109.5 109.5
H31 C28 H32 109.5 109.5
H31 C28 H33 109.4 109.4
H32 C28 H33 109.5 109.5
H39 C37 H40 109.4 109.4
H39 C37 H41 109.4 109.5
H40 C37 H41 109.5 109.4

Torsion Angles for 6GY

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C28 N25 C26 H13 304.3 303.1
C28 N25 C26 H14 63.5 63.2
C28 N25 C24 H26 294.7 56.8
C28 N25 C24 H27 54.3 296.8
N25 C26 C27 N22 308.7 301.5
C27 C26 N25 H13 239.6 240.1
C27 C26 N25 H14 120.4 120.0
N25 C26 C27 H29 69.0 61.5
N25 C26 C27 H30 188.4 181.6
H13 C26 N25 H14 240.7 239.9
C24 N25 C26 C27 54.6 59.3
C24 N25 C26 H13 175.0 179.2
C24 N25 C26 H14 294.2 299.3
N25 C24 C23 H24 174.8 298.4
N25 C24 C23 H25 294.2 178.4
H26 C24 N25 H27 240.4 120.0
N25 C26 C27 H13 120.4 119.9
N25 C26 C27 H14 239.6 240.0
H13 C26 C27 H14 119.3 120.1
H29 C27 C26 H30 240.7 239.9
N22 C27 C26 H13 188.3 181.7
N22 C27 C26 H14 69.1 61.6
C26 C27 N22 H29 120.3 120.0
C26 C27 N22 H30 239.7 240.1
C27 N22 C19 H18 65.9 296.1
H24 C23 C24 H25 240.6 120.0
C26 C27 N22 C23 50.8 59.4
C23 N22 C19 H18 205.2 59.9
C26 C27 N22 C19 192.1 183.2
C20 C19 N22 H18 244.7 239.9
N22 C19 C18 H11 314.5 57.7
N22 C19 C18 H12 74.3 297.6
N22 C19 C20 H18 115.6 120.1
C20 C19 C18 H11 180.3 297.7
C20 C19 C18 H12 300.1 177.6
C21 C20 C19 H18 49.9 62.3
H19 C20 C21 H20 119.9 120.1
H21 C21 C20 H22 240.3 119.9
C17 C18 C19 H11 239.9 119.9
C17 C18 C19 H12 120.1 240.0
C19 C18 C17 H16 71.4 60.8
C19 C18 C17 H17 190.7 180.8
H11 C18 C19 H12 240.2 120.1
C21 N16 C17 H16 283.3 301.7
C21 N16 C17 H17 164.0 181.8
C19 C18 C17 H11 120.1 240.1
C19 C18 C17 H12 239.9 120.0
N16 C17 C18 H16 239.7 240.0
N16 C17 C18 H17 120.3 120.0
H11 C18 C17 H12 119.8 239.9
H16 C17 C18 H17 240.7 240.0
N16 C17 C18 H11 191.0 60.7
N16 C17 C18 H12 71.2 180.9
C18 C17 N16 H16 120.3 120.0
C18 C17 N16 H17 239.7 239.9
H16 C17 N16 H17 119.4 119.9
N16 C11 C12 H7 0.4 0.0
N16 C11 C10 H6 359.6 0.0
C34 C33 C32 H35 179.8 180.0
C35 C34 C33 H36 180.2 179.8
C33 C32 C31 P1 179.4 180.0
C12 C11 C10 H6 180.1 180.1
C11 C12 C13 O14 180.1 180.1
C11 C12 C13 C8 0.1 0.0
C13 C12 C11 H7 180.0 180.0
C11 C10 C9 C8 359.9 0.0
C11 C10 C9 H5 179.9 179.7
C11 C12 C13 H7 180.0 180.0
O14 C13 C12 C8 180.0 180.0
C12 C13 O14 C15 326.2 360.0
C9 C8 C13 C12 360.0 0.0
C12 C13 C8 N7 180.0 180.3
C35 C30 C31 P1 180.7 180.2
C35 C30 N29 H34 130.6 160.3
C10 C9 C8 C13 0.0 360.0
C10 C9 C8 N7 180.0 179.7
C8 C9 C10 H5 180.0 180.3
C30 C31 C32 P1 180.6 180.0
C3 P1 C31 C32 335.6 15.0
C32 C31 P1 O41 214.0 135.0
C32 C31 P1 C37 87.6 255.0
C12 C13 O14 C8 180.0 180.0
O14 C13 C12 H7 0.1 0.1
C9 C8 C13 O14 180.0 180.0
O14 C13 C8 N7 0.0 0.2
C13 O14 C15 H8 180.0 60.0
C13 O14 C15 H9 300.0 180.0
C13 O14 C15 H10 60.0 300.0
C12 C13 C8 O14 180.0 180.0
C8 C13 C12 H7 180.1 180.0
C8 C13 O14 C15 146.2 180.0
C9 C8 C13 N7 179.9 179.7
C13 C8 C9 H5 180.0 180.3
C13 C8 N7 H15 338.3 22.8
C15 O14 C13 C8 146.2 180.0
H8 C15 O14 H9 240.0 240.0
H8 C15 O14 H10 120.0 120.0
H9 C15 O14 H10 240.0 240.0
C32 C31 C30 P1 179.3 180.0
C31 C30 N29 H34 310.7 340.5
C3 P1 C31 C30 154.9 195.0
C30 C31 P1 O41 33.4 315.0
C30 C31 P1 C37 266.9 75.0
C12 C13 C8 C9 360.0 0.0
C10 C9 C8 H5 180.0 179.7
O14 C13 C8 C9 180.0 180.0
C13 C8 C9 N7 180.1 180.3
C9 C8 N7 H15 158.3 203.1
C9 C8 N7 C13 180.1 180.3
N7 C8 C9 H5 360.0 0.0
C3 P1 C31 O41 121.5 240.0
C3 P1 C31 C37 248.0 120.0
C31 P1 C3 H1 180.0 60.0
C31 P1 C3 H2 300.0 180.0
C31 P1 C3 H3 60.0 300.0
C37 P1 C31 O41 233.5 120.0
C31 P1 C37 H39 180.0 180.0
C31 P1 C37 H40 300.0 300.0
C31 P1 C37 H41 60.0 59.9
N29 C2 C1 CL 359.9 359.6
N3 C2 C1 CL 180.0 179.7
N3 C4 N5 C6 360.0 359.4
C6 C1 C2 CL 179.9 180.4
C2 C1 C6 H4 180.0 179.7
C4 N5 C6 H4 180.1 180.6
C32 C31 P1 C3 335.6 15.0
C30 C31 P1 C3 154.9 195.0
C31 P1 C3 O41 237.4 120.0
C31 P1 C3 C37 118.4 240.0
C37 P1 C3 O41 119.0 240.0
C3 P1 C37 H39 297.5 60.1
C3 P1 C37 H40 57.4 180.0
C3 P1 C37 H41 177.5 300.0
H1 C3 P1 H2 240.0 240.0
H1 C3 P1 H3 120.0 120.0
H2 C3 P1 H3 240.0 240.0
C3 P1 O41 C31 237.9 120.0
C31 P1 O41 C37 234.0 120.0
C3 P1 O41 C37 111.9 240.0
O41 P1 C3 H1 302.6 300.0
O41 P1 C3 H2 62.7 60.0
O41 P1 C3 H3 182.6 180.0
O41 P1 C37 H39 54.2 300.1
O41 P1 C37 H40 174.2 60.0
O41 P1 C37 H41 294.2 180.0
C3 P1 C37 C31 117.5 240.0
C31 P1 C37 O41 125.8 239.9
C3 P1 C37 O41 243.3 120.0
C37 P1 C3 H1 61.6 180.0
C37 P1 C3 H2 181.7 300.0
C37 P1 C3 H3 301.6 60.0
H39 C37 P1 H40 240.0 240.1
H39 C37 P1 H41 120.0 120.1
H40 C37 P1 H41 240.0 240.0
C2 C1 C6 CL 180.1 179.6
C4 N5 C6 C1 0.1 0.7
N5 C6 C1 H4 180.0 179.9
C2 C1 CL C6 179.9 180.4
CL C1 C6 H4 359.9 0.1
N5 C6 C1 CL 179.9 180.0
C1 C6 N5 H4 180.0 180.1
H1 C3 P1 C31 180.0 60.0
H1 C3 P1 O41 302.6 300.0
H1 C3 P1 C37 61.6 180.0
P1 C3 H1 H2 120.0 120.0
P1 C3 H1 H3 240.0 240.0
H2 C3 H1 H3 120.0 120.0
H2 C3 P1 C31 300.0 180.0
H2 C3 P1 O41 62.7 60.0
H2 C3 P1 C37 181.7 300.0
P1 C3 H2 H1 240.0 240.0
P1 C3 H2 H3 120.0 120.0
H1 C3 H2 H3 240.0 240.0
H3 C3 P1 C31 60.0 300.0
H3 C3 P1 O41 182.6 180.0
H3 C3 P1 C37 301.6 60.0
P1 C3 H3 H1 120.0 120.0
P1 C3 H3 H2 240.0 240.0
H1 C3 H3 H2 120.0 120.0
H4 C6 C1 CL 359.9 0.1
C10 C9 H5 C8 180.0 180.3
H5 C9 C8 C13 180.0 180.3
H5 C9 C8 N7 360.0 0.0
H6 C10 C9 C8 179.9 180.0
H6 C10 C9 H5 359.9 359.7
C11 C12 H7 C13 180.0 180.0
H7 C12 C13 O14 0.1 0.1
H7 C12 C13 C8 180.1 180.0
O14 C15 H8 H9 120.0 120.0
O14 C15 H8 H10 240.0 240.0
H9 C15 H8 H10 120.0 120.0
O14 C15 H9 H8 240.0 240.0
O14 C15 H9 H10 120.0 120.0
H8 C15 H9 H10 240.1 240.0
O14 C15 H10 H8 120.0 120.0
O14 C15 H10 H9 240.0 240.0
H8 C15 H10 H9 120.0 120.0
C19 C18 H11 H12 119.7 239.9
H11 C18 C17 N16 191.0 60.7
C17 C18 H11 H12 240.3 120.1
H11 C18 C17 H16 311.3 180.7
H11 C18 C17 H17 70.6 300.7
C19 C18 H12 H11 240.3 120.1
H12 C18 C17 N16 71.2 180.9
C17 C18 H12 H11 119.7 239.9
H12 C18 C17 H16 191.5 300.9
H12 C18 C17 H17 310.8 60.8
N25 C26 H13 C27 237.6 240.2
N25 C26 H13 H14 118.8 120.1
H13 C26 C27 N22 188.3 181.7
C27 C26 H13 H14 241.2 239.9
H13 C26 C27 H29 308.7 301.7
H13 C26 C27 H30 68.0 61.7
N25 C26 H14 C27 122.4 119.9
N25 C26 H14 H13 241.2 239.9
H14 C26 C27 N22 69.1 61.6
C27 C26 H14 H13 118.8 120.0
H14 C26 C27 H29 189.4 181.6
H14 C26 C27 H30 308.7 301.7
C18 C17 H16 N16 237.9 239.9
H16 C17 C18 H11 311.3 180.7
H16 C17 C18 H12 191.5 300.9
C18 C17 H16 H17 118.9 120.0
N16 C17 H16 H17 241.0 240.1
C18 C17 H17 N16 122.1 120.1
H17 C17 C18 H11 70.6 300.7
H17 C17 C18 H12 310.8 60.8
C18 C17 H17 H16 241.1 240.0
N16 C17 H17 H16 119.0 119.9
H18 C19 C18 H11 68.6 177.8
H18 C19 C18 H12 188.4 57.7
H19 C20 C19 H18 169.9 182.2
C21 C20 H19 H20 240.1 239.9
H19 C20 C21 H21 51.8 179.2
H19 C20 C21 H22 171.5 59.3
H20 C20 C19 H18 289.9 302.3
C21 C20 H20 H19 119.9 120.0
H20 C20 C21 H21 291.8 59.1
H20 C20 C21 H22 51.6 299.2
H21 C21 C20 H19 51.8 179.2
H21 C21 C20 H20 291.8 59.1
C20 C21 H21 H22 119.6 240.0
H22 C21 C20 H19 171.5 59.3
H22 C21 C20 H20 51.6 299.2
C20 C21 H22 H21 240.4 120.0
C24 C23 H24 H25 119.1 240.0
C24 C23 H25 H24 240.9 120.0
N25 C24 H26 H27 119.4 240.0
H26 C24 C23 H24 54.6 58.4
H26 C24 C23 H25 174.0 298.4
N25 C24 H27 H26 240.6 120.0
H27 C24 C23 H24 295.0 178.5
H27 C24 C23 H25 54.4 58.4
C26 C27 H29 N22 237.9 240.1
H29 C27 C26 H13 308.7 301.7
H29 C27 C26 H14 189.4 181.6
C26 C27 H29 H30 118.9 120.1
C26 C27 H30 N22 122.1 119.8
H30 C27 C26 H13 68.0 61.7
H30 C27 C26 H14 308.7 301.7
C26 C27 H30 H29 241.1 239.9
H32 C28 H31 H33 120.0 120.0
H31 C28 H32 H33 240.0 240.0
H31 C28 H33 H32 120.0 120.0
H35 C32 C31 P1 359.4 360.0
H36 C33 C32 H35 359.8 0.0
H37 C34 C33 H36 0.2 360.0
H37 C34 C35 H38 359.8 359.8
H38 C35 C34 H37 359.8 359.8
H39 C37 P1 O41 54.2 300.1
P1 C37 H39 H40 120.0 119.9
P1 C37 H39 H41 240.0 239.9
H40 C37 H39 H41 120.0 119.9
H40 C37 P1 O41 174.2 60.0
P1 C37 H40 H39 240.0 240.0
P1 C37 H40 H41 120.0 120.1
H39 C37 H40 H41 240.1 240.0
H41 C37 P1 O41 294.2 180.0
P1 C37 H41 H39 120.1 120.1
P1 C37 H41 H40 240.0 240.0
H39 C37 H41 H40 119.9 119.9