PDB Chemical Component 6GC
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 6GC
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O12 |
C2 |
1.345 |
1.356 |
| O22 |
C20 |
1.226 |
1.217 |
| C2 |
C3 |
1.408 |
1.384 |
| C2 |
C7 |
1.416 |
1.405 |
| C20 |
C7 |
1.483 |
1.473 |
| C20 |
N21 |
1.372 |
1.348 |
| C3 |
C4 |
1.396 |
1.385 |
| C25 |
C19 |
1.394 |
1.383 |
| C25 |
C1 |
1.393 |
1.381 |
| C7 |
C6 |
1.396 |
1.396 |
| C19 |
C18 |
1.400 |
1.382 |
| C23 |
N21 |
1.471 |
1.465 |
| C23 |
C24 |
1.544 |
1.529 |
| N21 |
C26 |
1.473 |
1.465 |
| C1 |
C16 |
1.407 |
1.388 |
| C4 |
O11 |
1.356 |
1.357 |
| C4 |
C5 |
1.412 |
1.404 |
| C18 |
C17 |
1.398 |
1.383 |
| C6 |
C5 |
1.393 |
1.390 |
| C28 |
C24 |
1.534 |
1.529 |
| C28 |
C27 |
1.522 |
1.531 |
| C5 |
C8 |
1.480 |
1.478 |
| C16 |
C17 |
1.405 |
1.390 |
| C16 |
N10 |
1.422 |
1.402 |
| C17 |
F29 |
1.346 |
1.351 |
| C8 |
N10 |
1.393 |
1.383 |
| C8 |
N9 |
1.313 |
1.305 |
| N10 |
C14 |
1.355 |
1.348 |
| N9 |
N13 |
1.397 |
1.401 |
| C14 |
O15 |
1.231 |
1.217 |
| C14 |
N13 |
1.357 |
1.349 |
| C1 |
H1 |
1.080 |
1.080 |
| C3 |
H2 |
1.080 |
1.081 |
| C19 |
H3 |
1.080 |
1.081 |
| C24 |
H4 |
1.100 |
1.090 |
| C24 |
H5 |
1.100 |
1.091 |
| C27 |
H6 |
1.099 |
1.090 |
| C27 |
H7 |
1.100 |
1.090 |
| C27 |
H8 |
1.100 |
1.090 |
| C6 |
H9 |
1.080 |
1.080 |
| O11 |
H10 |
0.950 |
0.967 |
| O12 |
H11 |
0.950 |
0.967 |
| N13 |
H12 |
1.000 |
0.970 |
| C18 |
H13 |
1.080 |
1.080 |
| C23 |
H14 |
1.100 |
1.090 |
| C23 |
H15 |
1.100 |
1.090 |
| C25 |
H16 |
1.080 |
1.080 |
| C26 |
H17 |
1.100 |
1.090 |
| C26 |
H18 |
1.100 |
1.090 |
| C26 |
H19 |
1.100 |
1.090 |
| C28 |
H20 |
1.100 |
1.090 |
| C28 |
H21 |
1.100 |
1.090 |
Bond Angles for 6GC
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C3 |
C2 |
C7 |
120.2 |
120.1 |
| C2 |
C3 |
C4 |
120.1 |
120.2 |
| C2 |
C3 |
H2 |
120.0 |
119.9 |
| C2 |
C7 |
C6 |
118.9 |
119.8 |
| C20 |
C7 |
C6 |
114.2 |
120.0 |
| C20 |
N21 |
C26 |
122.1 |
120.0 |
| C3 |
C4 |
O11 |
121.2 |
120.0 |
| C3 |
C4 |
C5 |
119.7 |
120.1 |
| C4 |
C3 |
H2 |
119.9 |
119.8 |
| C25 |
C19 |
H3 |
119.6 |
119.9 |
| C25 |
C1 |
H1 |
119.6 |
120.0 |
| C7 |
C6 |
C5 |
121.1 |
119.8 |
| C7 |
C6 |
H9 |
119.4 |
120.1 |
| C19 |
C18 |
C17 |
119.5 |
120.0 |
| C18 |
C19 |
H3 |
119.6 |
120.0 |
| C19 |
C18 |
H13 |
120.2 |
120.0 |
| C23 |
N21 |
C26 |
116.7 |
120.0 |
| C23 |
C24 |
H4 |
109.6 |
109.5 |
| C23 |
C24 |
H5 |
109.6 |
109.5 |
| N21 |
C26 |
H17 |
109.5 |
109.4 |
| N21 |
C26 |
H18 |
109.4 |
109.5 |
| N21 |
C26 |
H19 |
109.5 |
109.4 |
| C1 |
C16 |
C17 |
118.8 |
119.8 |
| C1 |
C16 |
N10 |
120.9 |
120.1 |
| C16 |
C1 |
H1 |
119.5 |
120.0 |
| C5 |
C4 |
O11 |
119.1 |
119.9 |
| C4 |
O11 |
H10 |
109.5 |
114.0 |
| C18 |
C17 |
F29 |
120.1 |
120.1 |
| C28 |
C24 |
H4 |
109.6 |
109.5 |
| C28 |
C24 |
H5 |
109.6 |
109.5 |
| C28 |
C27 |
H6 |
109.5 |
109.5 |
| C28 |
C27 |
H7 |
109.5 |
109.5 |
| C28 |
C27 |
H8 |
109.5 |
109.4 |
| C5 |
C8 |
N10 |
123.3 |
125.8 |
| C5 |
C8 |
N9 |
127.1 |
125.7 |
| N10 |
C16 |
C17 |
120.3 |
120.1 |
| C16 |
C17 |
F29 |
119.4 |
120.1 |
| C8 |
N10 |
C16 |
126.8 |
125.8 |
| N9 |
C8 |
N10 |
109.6 |
108.5 |
| C8 |
N10 |
C14 |
107.2 |
108.3 |
| C8 |
N9 |
N13 |
107.0 |
108.0 |
| N10 |
C14 |
O15 |
125.7 |
126.2 |
| N10 |
C14 |
N13 |
107.7 |
107.6 |
| C14 |
N13 |
N9 |
108.5 |
107.6 |
| N9 |
N13 |
H12 |
125.8 |
126.2 |
| N13 |
C14 |
O15 |
126.6 |
126.2 |
| C14 |
N13 |
H12 |
125.8 |
126.2 |
| H4 |
C24 |
H5 |
109.5 |
109.4 |
| H6 |
C27 |
H7 |
109.5 |
109.5 |
| H6 |
C27 |
H8 |
109.5 |
109.5 |
| H7 |
C27 |
H8 |
109.5 |
109.5 |
| H14 |
C23 |
H15 |
109.5 |
109.4 |
| H17 |
C26 |
H18 |
109.5 |
109.5 |
| H17 |
C26 |
H19 |
109.5 |
109.5 |
| H18 |
C26 |
H19 |
109.5 |
109.5 |
| H20 |
C28 |
H21 |
109.4 |
109.5 |
Torsion Angles for 6GC
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O12 |
C2 |
C3 |
H2 |
0.8 |
359.7 |
| O22 |
C20 |
N21 |
C26 |
179.3 |
174.1 |
| C3 |
C2 |
C7 |
C6 |
358.0 |
0.0 |
| C2 |
C3 |
C4 |
O11 |
179.2 |
180.0 |
| C2 |
C3 |
C4 |
C5 |
358.5 |
0.0 |
| C4 |
C3 |
C2 |
H2 |
180.0 |
180.0 |
| C7 |
C2 |
C3 |
C4 |
1.3 |
359.9 |
| C7 |
C2 |
C3 |
H2 |
181.3 |
180.0 |
| C20 |
C7 |
C2 |
C6 |
188.7 |
180.0 |
| C2 |
C7 |
C6 |
C5 |
3.0 |
0.0 |
| C2 |
C7 |
C6 |
H9 |
183.0 |
179.9 |
| C2 |
C7 |
C20 |
C6 |
171.6 |
180.0 |
| C20 |
C7 |
C6 |
C5 |
175.3 |
180.0 |
| C20 |
C7 |
C6 |
H9 |
355.3 |
360.0 |
| N21 |
C20 |
C7 |
C6 |
266.5 |
308.5 |
| C23 |
N21 |
C20 |
C26 |
181.9 |
180.0 |
| C20 |
N21 |
C26 |
H17 |
180.0 |
92.0 |
| C20 |
N21 |
C26 |
H18 |
300.0 |
212.0 |
| C20 |
N21 |
C26 |
H19 |
60.0 |
332.1 |
| C4 |
C3 |
C2 |
C7 |
1.3 |
359.9 |
| C2 |
C3 |
C4 |
H2 |
180.0 |
180.0 |
| C5 |
C4 |
C3 |
O11 |
179.3 |
180.0 |
| C3 |
C4 |
O11 |
H10 |
180.0 |
90.0 |
| C19 |
C25 |
C1 |
H1 |
180.3 |
179.7 |
| C18 |
C19 |
C25 |
H3 |
180.0 |
180.3 |
| C25 |
C19 |
C18 |
H13 |
180.4 |
180.0 |
| C16 |
C1 |
C25 |
H1 |
180.0 |
179.7 |
| C25 |
C19 |
C18 |
H3 |
180.0 |
179.7 |
| C19 |
C18 |
C17 |
F29 |
179.7 |
180.0 |
| C20 |
N21 |
C23 |
C26 |
178.2 |
180.0 |
| N21 |
C23 |
C24 |
H4 |
311.9 |
300.0 |
| N21 |
C23 |
C24 |
H5 |
72.1 |
60.0 |
| C23 |
N21 |
C26 |
H17 |
358.2 |
272.0 |
| C23 |
N21 |
C26 |
H18 |
118.1 |
32.0 |
| C23 |
N21 |
C26 |
H19 |
238.1 |
152.0 |
| C28 |
C24 |
C23 |
H4 |
240.1 |
239.9 |
| C28 |
C24 |
C23 |
H5 |
119.9 |
120.0 |
| H4 |
C24 |
C23 |
H5 |
239.8 |
240.1 |
| H17 |
C26 |
N21 |
H18 |
240.0 |
240.0 |
| H17 |
C26 |
N21 |
H19 |
120.0 |
120.0 |
| H18 |
C26 |
N21 |
H19 |
240.0 |
240.0 |
| C25 |
C1 |
C16 |
H1 |
180.0 |
180.3 |
| N10 |
C16 |
C1 |
C17 |
178.8 |
180.0 |
| C1 |
C16 |
C17 |
F29 |
179.9 |
180.0 |
| C8 |
N10 |
C16 |
C1 |
289.5 |
94.8 |
| C3 |
C4 |
O11 |
C5 |
179.3 |
180.0 |
| O11 |
C4 |
C3 |
H2 |
359.1 |
360.0 |
| C3 |
C4 |
C5 |
O11 |
180.6 |
180.0 |
| C5 |
C4 |
C3 |
H2 |
178.5 |
180.0 |
| C7 |
C6 |
C5 |
C4 |
356.7 |
360.0 |
| C5 |
C4 |
O11 |
H10 |
0.7 |
270.0 |
| C4 |
C5 |
C8 |
N10 |
125.2 |
173.2 |
| C4 |
C5 |
C8 |
N9 |
305.1 |
353.5 |
| C17 |
C18 |
C19 |
H3 |
180.4 |
179.9 |
| C19 |
C18 |
C17 |
H13 |
180.0 |
180.3 |
| C16 |
C17 |
C18 |
F29 |
180.5 |
180.0 |
| C7 |
C6 |
C5 |
H9 |
180.0 |
179.9 |
| C6 |
C5 |
C4 |
O11 |
181.8 |
180.0 |
| C6 |
C5 |
C8 |
N10 |
307.0 |
353.1 |
| C6 |
C5 |
C8 |
N9 |
126.8 |
173.4 |
| C23 |
C24 |
C28 |
H4 |
119.9 |
120.0 |
| C23 |
C24 |
C28 |
H5 |
240.1 |
240.0 |
| H4 |
C24 |
C28 |
H5 |
120.2 |
120.0 |
| C27 |
C28 |
C24 |
H4 |
2.4 |
59.9 |
| C27 |
C28 |
C24 |
H5 |
242.1 |
300.0 |
| H6 |
C27 |
C28 |
H7 |
240.0 |
239.9 |
| H6 |
C27 |
C28 |
H8 |
120.0 |
119.9 |
| H7 |
C27 |
C28 |
H8 |
240.0 |
240.0 |
| C3 |
C4 |
C5 |
C8 |
184.3 |
180.0 |
| C7 |
C6 |
C5 |
C8 |
175.0 |
180.0 |
| C5 |
C8 |
N10 |
C16 |
357.7 |
0.3 |
| N9 |
C8 |
C5 |
N10 |
179.8 |
180.3 |
| C5 |
C8 |
N10 |
C14 |
178.2 |
180.3 |
| C5 |
C8 |
N9 |
N13 |
181.5 |
179.7 |
| C19 |
C18 |
C17 |
C16 |
0.2 |
0.1 |
| C1 |
C16 |
C17 |
N10 |
178.8 |
180.0 |
| C17 |
C16 |
C1 |
H1 |
180.3 |
180.0 |
| C18 |
C17 |
C16 |
F29 |
179.5 |
180.0 |
| C8 |
N10 |
C16 |
C17 |
108.4 |
274.8 |
| C1 |
C16 |
N10 |
C17 |
181.2 |
180.0 |
| N10 |
C16 |
C1 |
H1 |
359.2 |
0.0 |
| N10 |
C16 |
C17 |
F29 |
1.1 |
360.0 |
| N9 |
C8 |
N10 |
C16 |
177.8 |
180.0 |
| C8 |
N10 |
C16 |
C14 |
180.6 |
180.0 |
| C16 |
N10 |
C14 |
O15 |
0.9 |
0.0 |
| C16 |
N10 |
C14 |
N13 |
181.8 |
180.0 |
| C1 |
C16 |
N10 |
C8 |
289.5 |
94.8 |
| C5 |
C8 |
N10 |
N9 |
179.8 |
180.3 |
| N10 |
C8 |
N9 |
N13 |
1.3 |
0.0 |
| C8 |
N10 |
C14 |
O15 |
180.4 |
180.0 |
| C8 |
N10 |
C14 |
N13 |
1.3 |
0.0 |
| C5 |
C8 |
N9 |
N10 |
180.2 |
179.7 |
| N9 |
C8 |
N10 |
C14 |
358.3 |
360.0 |
| C14 |
N13 |
N9 |
C8 |
359.5 |
360.0 |
| C8 |
N9 |
N13 |
H12 |
179.4 |
179.9 |
| C1 |
C16 |
N10 |
C14 |
109.0 |
274.8 |
| C8 |
N10 |
C14 |
C16 |
179.5 |
180.0 |
| N10 |
C14 |
N13 |
N9 |
359.5 |
0.0 |
| N13 |
C14 |
N10 |
O15 |
180.9 |
180.0 |
| N10 |
C14 |
N13 |
H12 |
179.5 |
180.1 |
| N13 |
N9 |
C8 |
N10 |
1.3 |
0.0 |
| N9 |
N13 |
C14 |
O15 |
180.4 |
180.0 |
| C14 |
N13 |
N9 |
H12 |
180.0 |
180.1 |
| N10 |
C14 |
O15 |
N13 |
181.0 |
180.0 |
| O15 |
C14 |
N13 |
N9 |
180.4 |
180.0 |
| O15 |
C14 |
N13 |
H12 |
0.4 |
0.0 |
| C8 |
N9 |
N13 |
C14 |
359.5 |
360.0 |
| N10 |
C14 |
N13 |
O15 |
179.1 |
180.0 |
| N9 |
N13 |
C14 |
H12 |
180.0 |
179.9 |
| H1 |
C1 |
C16 |
C17 |
180.3 |
180.0 |
| H1 |
C1 |
C16 |
N10 |
359.2 |
0.0 |
| H2 |
C3 |
C2 |
C7 |
181.3 |
180.0 |
| C2 |
C3 |
H2 |
C4 |
180.0 |
180.0 |
| H2 |
C3 |
C4 |
O11 |
359.1 |
360.0 |
| H2 |
C3 |
C4 |
C5 |
178.5 |
180.0 |
| H3 |
C19 |
C18 |
C17 |
180.4 |
179.9 |
| H3 |
C19 |
C18 |
H13 |
0.4 |
0.2 |
| C23 |
C24 |
H4 |
H5 |
120.3 |
120.0 |
| C28 |
C24 |
H4 |
H5 |
239.7 |
240.0 |
| C23 |
C24 |
H5 |
H4 |
239.7 |
240.0 |
| C28 |
C24 |
H5 |
H4 |
120.3 |
120.0 |
| C28 |
C27 |
H6 |
H7 |
120.0 |
120.0 |
| C28 |
C27 |
H6 |
H8 |
240.0 |
240.1 |
| H7 |
C27 |
H6 |
H8 |
120.0 |
120.0 |
| C28 |
C27 |
H7 |
H6 |
240.0 |
240.0 |
| C28 |
C27 |
H7 |
H8 |
120.0 |
120.0 |
| H6 |
C27 |
H7 |
H8 |
240.0 |
240.0 |
| C28 |
C27 |
H8 |
H6 |
120.0 |
120.0 |
| C28 |
C27 |
H8 |
H7 |
240.0 |
240.0 |
| H6 |
C27 |
H8 |
H7 |
120.0 |
120.0 |
| C7 |
C6 |
H9 |
C5 |
180.0 |
180.1 |
| C14 |
N13 |
H12 |
N9 |
180.0 |
179.9 |
| H12 |
N13 |
C14 |
O15 |
0.4 |
0.0 |
| C19 |
C18 |
H13 |
C17 |
180.0 |
179.7 |
| H13 |
C18 |
C19 |
H3 |
0.4 |
0.2 |
| H13 |
C18 |
C17 |
F29 |
359.6 |
359.7 |
| H14 |
C23 |
N21 |
C26 |
206.2 |
150.0 |
| H14 |
C23 |
C24 |
H4 |
191.8 |
60.0 |
| H14 |
C23 |
C24 |
H5 |
312.0 |
180.0 |
| H15 |
C23 |
N21 |
C26 |
326.0 |
30.1 |
| H15 |
C23 |
C24 |
H4 |
72.0 |
180.0 |
| H15 |
C23 |
C24 |
H5 |
192.2 |
299.9 |
| H16 |
C25 |
C19 |
H3 |
359.4 |
359.7 |
| H16 |
C25 |
C1 |
H1 |
0.3 |
0.3 |
| N21 |
C26 |
H17 |
H18 |
120.0 |
120.0 |
| N21 |
C26 |
H17 |
H19 |
240.0 |
240.0 |
| H18 |
C26 |
H17 |
H19 |
120.0 |
120.0 |
| N21 |
C26 |
H18 |
H17 |
240.0 |
240.0 |
| N21 |
C26 |
H18 |
H19 |
120.0 |
120.0 |
| H17 |
C26 |
H18 |
H19 |
240.0 |
240.0 |
| N21 |
C26 |
H19 |
H17 |
120.0 |
119.9 |
| N21 |
C26 |
H19 |
H18 |
240.0 |
240.0 |
| H17 |
C26 |
H19 |
H18 |
120.0 |
120.0 |
| H20 |
C28 |
C24 |
H4 |
122.2 |
180.0 |
| H20 |
C28 |
C24 |
H5 |
2.0 |
60.0 |
| H20 |
C28 |
C27 |
H6 |
60.2 |
59.9 |
| H20 |
C28 |
C27 |
H7 |
180.2 |
180.0 |
| H20 |
C28 |
C27 |
H8 |
300.2 |
300.0 |
| H21 |
C28 |
C24 |
H4 |
242.5 |
300.0 |
| H21 |
C28 |
C24 |
H5 |
122.3 |
180.0 |
| H21 |
C28 |
C27 |
H6 |
299.8 |
299.9 |
| H21 |
C28 |
C27 |
H7 |
59.8 |
60.0 |
| H21 |
C28 |
C27 |
H8 |
179.8 |
180.0 |