Atom Nomenclature for 6FS

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 6FS

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
C5 C4
C6 C5
C7 C6
C8 C7
C10 C8
C11 C9
C12 C10
C13 C11
C14 C12
C15 C13
C16 C14
C19 C15
C21 C16
O7 O1
S1 S1
C18 C17
O8 O2
O4 O3
O3 O4
O6 O5
C17 C18
C9 C19
O1 O6
C4 C20
C20 C21
O5 O7
N1 N1
O2 O8
H1 H1
H5 H2
H72 H3
H71 H4
H73 H5
H82 H6
H81 H7
H83 H8
H10 H9
H9M H10
H9L H11
H11 H12
H9N H13
H12 H14
H13 H15
H14 H16
H9P H17
H19 H18
H9O H19
H2 H20
H17 H21
H9 H22
H9Q H23
H20 H24
H15 H25