PDB Chemical Component 6FM

Ideal Model

Chemical Description

Name 2'-deoxy-4'-ethynyl-2-fluoroadenosine 5'-(dihydrogen phosphate)
Formula C12 H13 F N5 O6 P
Formal charge 0
Molecular weight 373.234 g/mol
Component type DNA linking

Chemical features

Atom count 38
Chiral atom count 3
Chiral atoms C1' C3' C4'
Observed leaving atoms OP1
Bond count 40
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-4'-ethynyl-2-fluoroadenosine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2~{R},3~{S},5~{R})-5-(6-azanyl-2-fluoranyl-purin-9-yl)-2-ethynyl-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) Nc1nc(F)nc2n(cnc12)[C@H]3C[C@H](O)[C@@](CO[P](O)(O)=O)(O3)C#C
SMILES (CACTVS) Nc1nc(F)nc2n(cnc12)[CH]3C[CH](O)[C](CO[P](O)(O)=O)(O3)C#C
Stereo SMILES (OpenEye) C#C[C@]1([C@H](C[C@@H](O1)n2cnc3c2nc(nc3N)F)O)COP(=O)(O)O
InChI descriptor InChI=1S/C12H13FN5O6P/c1-2-12(4-23-25(20,21)22)6(19)3-7(24-12)18-5-15-8-9(14)16-11(13)17-10(8)18/h1,5-7,19H,3-4H2,(H2,14,16,17)(H2,20,21,22)/t6-,7+,12+/m0/s1
InChIKey descriptor MAIQRKKYFLNZMS-QRPMWFLTSA-N

Status Information

Last modified 2016-07-29
Created 2016-03-30
Release status REL
Model PDB code 5J2N
Processing site RCSB