PDB Chemical Component 6FM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 6FM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N6 |
C6 |
1.453 |
1.384 |
| C6 |
N1 |
1.331 |
1.329 |
| C6 |
C5 |
1.375 |
1.406 |
| N7 |
C5 |
1.438 |
1.356 |
| N7 |
C8 |
1.357 |
1.301 |
| N1 |
C2 |
1.341 |
1.323 |
| C5 |
C4 |
1.390 |
1.404 |
| C8 |
N9 |
1.223 |
1.364 |
| C2 |
F32 |
1.364 |
1.350 |
| C2 |
N3 |
1.331 |
1.319 |
| C4 |
N9 |
1.215 |
1.371 |
| C4 |
N3 |
1.311 |
1.330 |
| N9 |
C1' |
1.415 |
1.465 |
| OP2 |
PA |
1.461 |
1.610 |
| C1' |
C2' |
1.500 |
1.550 |
| C1' |
O4' |
1.498 |
1.443 |
| PA |
OP3 |
1.647 |
1.610 |
| PA |
O5' |
1.649 |
1.611 |
| C5' |
C4' |
1.528 |
1.530 |
| C5' |
O5' |
1.397 |
1.429 |
| C2' |
C3' |
1.451 |
1.547 |
| O4' |
C4' |
1.461 |
1.437 |
| C3' |
C4' |
1.486 |
1.540 |
| C3' |
O3' |
1.462 |
1.429 |
| C4' |
C33 |
1.512 |
1.472 |
| C33 |
C34 |
1.187 |
1.174 |
| N6 |
H1 |
1.000 |
0.969 |
| N6 |
H2 |
1.000 |
0.971 |
| C8 |
H3 |
1.080 |
1.079 |
| C1' |
H4 |
1.100 |
1.090 |
| C2' |
H5 |
1.100 |
1.090 |
| C2' |
H6 |
1.100 |
1.090 |
| C3' |
H7 |
1.100 |
1.091 |
| O3' |
H8 |
0.950 |
0.968 |
| C34 |
H9 |
1.060 |
1.050 |
| C5' |
H10 |
1.100 |
1.089 |
| C5' |
H11 |
1.100 |
1.090 |
| OP3 |
HOP3 |
0.950 |
0.967 |
| OP2 |
HOP2 |
0.950 |
0.966 |
| PA |
OP1 |
|
1.480 |
Bond Angles for 6FM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N6 |
C6 |
C5 |
121.0 |
120.8 |
| N7 |
C8 |
N9 |
105.5 |
109.9 |
| N7 |
C8 |
H3 |
127.2 |
125.0 |
| C5 |
C4 |
N9 |
104.2 |
106.0 |
| C4 |
N9 |
C8 |
121.4 |
107.5 |
| C8 |
N9 |
C1' |
119.5 |
126.2 |
| N9 |
C8 |
H3 |
127.3 |
125.0 |
| N3 |
C4 |
N9 |
135.6 |
134.9 |
| C4 |
N9 |
C1' |
119.2 |
126.3 |
| N9 |
C1' |
C2' |
109.7 |
110.6 |
| N9 |
C1' |
O4' |
110.1 |
110.6 |
| N9 |
C1' |
H4 |
110.2 |
110.5 |
| OP2 |
PA |
OP1 |
|
109.5 |
| C2' |
C1' |
O4' |
108.7 |
103.5 |
| C1' |
C2' |
C3' |
104.8 |
102.1 |
| C2' |
C1' |
H4 |
109.1 |
110.6 |
| C1' |
C2' |
H5 |
110.6 |
110.9 |
| C1' |
C2' |
H6 |
110.6 |
110.9 |
| C1' |
O4' |
C4' |
105.0 |
107.0 |
| O4' |
C1' |
H4 |
109.0 |
110.8 |
| PA |
OP3 |
HOP3 |
109.5 |
114.0 |
| OP3 |
PA |
OP1 |
|
109.5 |
| O5' |
C5' |
H10 |
109.4 |
109.5 |
| O5' |
C5' |
H11 |
109.4 |
109.5 |
| C2' |
C3' |
C4' |
106.7 |
104.2 |
| C2' |
C3' |
O3' |
110.2 |
110.5 |
| C3' |
C2' |
H5 |
110.6 |
110.9 |
| C3' |
C2' |
H6 |
110.6 |
110.9 |
| C2' |
C3' |
H7 |
109.8 |
110.5 |
| O3' |
C3' |
C4' |
111.1 |
110.5 |
| C3' |
C4' |
C33 |
110.4 |
109.9 |
| C4' |
C3' |
H7 |
109.3 |
110.5 |
| O3' |
C3' |
H7 |
109.7 |
110.5 |
| C3' |
O3' |
H8 |
109.5 |
114.0 |
| C4' |
C33 |
C34 |
179.8 |
179.9 |
| C33 |
C34 |
H9 |
180.0 |
179.9 |
| H1 |
N6 |
H2 |
109.5 |
120.0 |
| H5 |
C2' |
H6 |
109.5 |
110.8 |
| H10 |
C5' |
H11 |
109.4 |
109.5 |
Torsion Angles for 6FM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C5 |
C4 |
N9 |
180.0 |
180.4 |
| N7 |
C5 |
C4 |
N9 |
360.0 |
360.0 |
| C4 |
N9 |
C8 |
N7 |
0.1 |
0.8 |
| N7 |
C8 |
N9 |
C1' |
180.0 |
180.1 |
| N9 |
C8 |
N7 |
H3 |
180.0 |
179.2 |
| C5 |
C4 |
N9 |
C8 |
360.0 |
359.5 |
| N3 |
C4 |
C5 |
N9 |
180.0 |
180.2 |
| C5 |
C4 |
N9 |
C1' |
180.1 |
180.2 |
| N7 |
C8 |
N9 |
H3 |
180.0 |
180.8 |
| N3 |
C4 |
N9 |
C8 |
180.0 |
179.3 |
| C4 |
N9 |
C8 |
C1' |
180.1 |
180.7 |
| C8 |
N9 |
C1' |
C2' |
263.6 |
265.8 |
| C8 |
N9 |
C1' |
O4' |
23.2 |
19.9 |
| C8 |
N9 |
C1' |
H4 |
143.5 |
142.9 |
| C2 |
N3 |
C4 |
N9 |
180.0 |
180.0 |
| N7 |
C8 |
N9 |
C4 |
0.1 |
0.8 |
| C8 |
N9 |
C4 |
C1' |
179.9 |
179.3 |
| C4 |
N9 |
C8 |
H3 |
180.1 |
180.0 |
| C4 |
N9 |
C1' |
C2' |
83.5 |
85.0 |
| C4 |
N9 |
C1' |
O4' |
203.1 |
199.0 |
| C4 |
N9 |
C1' |
H4 |
323.4 |
322.1 |
| C5 |
C4 |
N3 |
N9 |
180.0 |
179.8 |
| N3 |
C4 |
N9 |
C1' |
0.1 |
0.0 |
| C4 |
N9 |
C1' |
C8 |
179.9 |
179.2 |
| C1' |
N9 |
C8 |
H3 |
0.0 |
359.3 |
| C2' |
C1' |
N9 |
O4' |
240.4 |
245.9 |
| N9 |
C1' |
C2' |
C3' |
105.9 |
155.6 |
| C2' |
C1' |
N9 |
H4 |
120.1 |
122.8 |
| N9 |
C1' |
C2' |
H5 |
225.2 |
273.8 |
| N9 |
C1' |
C2' |
H6 |
346.6 |
37.3 |
| N9 |
C1' |
O4' |
C4' |
237.8 |
201.4 |
| O4' |
C1' |
N9 |
H4 |
239.7 |
236.9 |
| OP2 |
PA |
OP3 |
HOP3 |
180.0 |
59.9 |
| OP3 |
PA |
OP2 |
OP1 |
|
240.0 |
| N9 |
C1' |
C2' |
O4' |
120.4 |
118.5 |
| N9 |
C1' |
C2' |
H4 |
239.2 |
237.2 |
| C2' |
C1' |
O4' |
C4' |
358.0 |
319.9 |
| O4' |
C1' |
C2' |
H4 |
118.7 |
118.7 |
| C1' |
C2' |
C3' |
C4' |
25.3 |
339.1 |
| C1' |
C2' |
C3' |
O3' |
146.1 |
97.8 |
| C3' |
C2' |
C1' |
H5 |
240.7 |
241.8 |
| C3' |
C2' |
C1' |
H6 |
119.3 |
118.2 |
| C1' |
C2' |
C3' |
H7 |
266.9 |
220.5 |
| H5 |
C2' |
C1' |
H6 |
238.5 |
236.4 |
| N9 |
C1' |
O4' |
C2' |
239.8 |
241.5 |
| N9 |
C1' |
O4' |
H4 |
121.1 |
122.9 |
| O4' |
C1' |
C2' |
C3' |
345.5 |
37.0 |
| C2' |
C1' |
O4' |
H4 |
241.2 |
241.4 |
| O4' |
C1' |
C2' |
H5 |
104.7 |
155.3 |
| O4' |
C1' |
C2' |
H6 |
226.2 |
278.8 |
| OP2 |
PA |
OP3 |
OP1 |
|
120.0 |
| PA |
O5' |
C5' |
H10 |
93.2 |
60.0 |
| PA |
O5' |
C5' |
H11 |
333.3 |
299.9 |
| C5' |
C4' |
C3' |
H7 |
331.8 |
357.0 |
| H10 |
C5' |
O5' |
H11 |
119.9 |
120.0 |
| C3' |
C2' |
C1' |
O4' |
345.5 |
37.0 |
| C3' |
C2' |
C1' |
H4 |
226.7 |
278.3 |
| C1' |
C2' |
C3' |
H5 |
119.2 |
118.2 |
| C1' |
C2' |
C3' |
H6 |
240.7 |
241.8 |
| O3' |
C3' |
C2' |
C4' |
120.7 |
118.7 |
| C2' |
C3' |
C4' |
C33 |
91.8 |
117.4 |
| C4' |
C3' |
C2' |
H7 |
118.4 |
118.6 |
| O3' |
C3' |
C2' |
H7 |
239.1 |
237.3 |
| C2' |
C3' |
O3' |
H8 |
180.0 |
61.4 |
| H5 |
C2' |
C3' |
H6 |
121.5 |
123.6 |
| C4' |
O4' |
C1' |
H4 |
116.7 |
78.5 |
| O4' |
C4' |
C3' |
H7 |
91.0 |
116.7 |
| C1' |
O4' |
C4' |
C3' |
17.7 |
26.5 |
| C2' |
C3' |
C4' |
O3' |
120.2 |
118.7 |
| C4' |
C3' |
C2' |
H5 |
266.1 |
220.9 |
| C4' |
C3' |
C2' |
H6 |
144.6 |
97.3 |
| C2' |
C3' |
C4' |
H7 |
241.3 |
241.3 |
| O3' |
C3' |
C4' |
H7 |
121.2 |
122.6 |
| C4' |
C3' |
O3' |
H8 |
298.1 |
176.2 |
| C3' |
C4' |
C33 |
C34 |
160.0 |
264.5 |
| C2' |
C3' |
O3' |
C4' |
241.9 |
245.2 |
| O3' |
C3' |
C2' |
H5 |
26.8 |
339.6 |
| O3' |
C3' |
C2' |
H6 |
265.3 |
216.0 |
| C2' |
C3' |
O3' |
H7 |
120.9 |
122.6 |
| O3' |
C3' |
C4' |
C33 |
331.7 |
358.7 |
| C4' |
C3' |
O3' |
H7 |
239.0 |
237.4 |
| C1' |
O4' |
C4' |
C33 |
257.7 |
267.1 |
| C33 |
C4' |
C3' |
H7 |
210.5 |
236.1 |
| C4' |
C33 |
C34 |
H9 |
207.1 |
137.5 |
| H1 |
N6 |
C6 |
C5 |
180.0 |
179.7 |
| H2 |
N6 |
C6 |
C5 |
300.0 |
359.7 |
| N7 |
C8 |
H3 |
N9 |
180.0 |
179.0 |
| H3 |
C8 |
N9 |
C1' |
0.0 |
359.3 |
| N9 |
C1' |
H4 |
C2' |
120.5 |
122.8 |
| N9 |
C1' |
H4 |
O4' |
239.0 |
237.0 |
| C2' |
C1' |
H4 |
O4' |
118.5 |
114.2 |
| H4 |
C1' |
C2' |
C3' |
226.7 |
278.3 |
| H4 |
C1' |
C2' |
H5 |
346.0 |
36.6 |
| H4 |
C1' |
C2' |
H6 |
107.4 |
160.1 |
| H4 |
C1' |
O4' |
C4' |
116.7 |
78.5 |
| H5 |
C2' |
C1' |
O4' |
104.7 |
155.3 |
| C1' |
C2' |
H5 |
C3' |
244.3 |
247.3 |
| H5 |
C2' |
C1' |
H4 |
346.0 |
36.6 |
| C1' |
C2' |
H5 |
H6 |
122.2 |
123.6 |
| H5 |
C2' |
C3' |
C4' |
266.1 |
220.9 |
| H5 |
C2' |
C3' |
O3' |
26.8 |
339.6 |
| C3' |
C2' |
H5 |
H6 |
237.8 |
236.3 |
| H5 |
C2' |
C3' |
H7 |
147.7 |
102.2 |
| H6 |
C2' |
C1' |
O4' |
226.2 |
278.8 |
| C1' |
C2' |
H6 |
C3' |
115.7 |
112.7 |
| H6 |
C2' |
C1' |
H4 |
107.4 |
160.1 |
| C1' |
C2' |
H6 |
H5 |
237.8 |
236.4 |
| H6 |
C2' |
C3' |
C4' |
144.6 |
97.3 |
| H6 |
C2' |
C3' |
O3' |
265.3 |
216.0 |
| C3' |
C2' |
H6 |
H5 |
122.2 |
123.7 |
| H6 |
C2' |
C3' |
H7 |
26.2 |
338.6 |
| C2' |
C3' |
H7 |
C4' |
116.7 |
114.7 |
| C2' |
C3' |
H7 |
O3' |
238.8 |
237.3 |
| H7 |
C3' |
C2' |
H5 |
147.7 |
102.2 |
| H7 |
C3' |
C2' |
H6 |
26.2 |
338.6 |
| O3' |
C3' |
H7 |
C4' |
237.9 |
237.4 |
| H7 |
C3' |
C4' |
C33 |
210.5 |
236.1 |
| H7 |
C3' |
O3' |
H8 |
59.1 |
298.8 |
| H8 |
O3' |
C3' |
C4' |
298.1 |
176.2 |
| H8 |
O3' |
C3' |
H7 |
59.1 |
298.8 |
| O5' |
C5' |
H10 |
H11 |
240.1 |
240.0 |
| O5' |
C5' |
H11 |
H10 |
119.9 |
120.0 |
| HOP3 |
OP3 |
PA |
OP1 |
|
299.9 |
| HOP2 |
OP2 |
PA |
OP1 |
|
180.0 |
| OP1 |
PA |
OP3 |
HOP3 |
|
299.9 |