Atom Nomenclature for 6FL

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 6FL

Atom Name (V3) Atom Name (V2)
C C
N N
O O
CA CA
CB CB
CG CG
FAC FAC
FAD FAD
FAE FAE
FAF FAF
FAG FAG
FAH FAH
CD1 CD1
CD2 CD2
OXT OXT
H H
H2 HN2
HA HA
HB HB
HBA HBA
HG HG
HXT HXT