PDB Chemical Component 6FK
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 6FK
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C15 |
C14 |
1.398 |
1.384 |
| C15 |
C16 |
1.391 |
1.383 |
| C14 |
C13 |
1.398 |
1.381 |
| C16 |
C17 |
1.400 |
1.381 |
| C13 |
C12 |
1.393 |
1.388 |
| C17 |
C12 |
1.399 |
1.388 |
| C12 |
N4 |
1.416 |
1.401 |
| N4 |
C9 |
1.335 |
1.348 |
| N4 |
C8 |
1.349 |
1.390 |
| C10 |
C9 |
1.495 |
1.507 |
| C9 |
O11 |
1.223 |
1.213 |
| N7 |
C8 |
1.344 |
1.308 |
| N7 |
C5 |
1.341 |
1.356 |
| C8 |
N9 |
1.330 |
1.368 |
| O6 |
C6 |
1.243 |
1.221 |
| C5 |
C6 |
1.470 |
1.466 |
| C5 |
C4 |
1.487 |
1.388 |
| N9 |
C1' |
1.488 |
1.465 |
| N9 |
C4 |
1.332 |
1.364 |
| C1' |
C2' |
1.504 |
1.545 |
| C1' |
O4' |
1.436 |
1.445 |
| C6 |
N1 |
1.329 |
1.342 |
| C4 |
N3 |
1.343 |
1.371 |
| C2' |
C3' |
1.504 |
1.545 |
| O4' |
C4' |
1.429 |
1.444 |
| N1 |
C2 |
1.345 |
1.316 |
| N3 |
C2 |
1.346 |
1.358 |
| C3' |
C4' |
1.502 |
1.545 |
| C3' |
O3' |
1.413 |
1.429 |
| C2 |
N2 |
1.336 |
1.370 |
| C4' |
C5' |
1.526 |
1.529 |
| C5' |
O5' |
1.420 |
1.429 |
| O5' |
P |
1.622 |
1.610 |
| P |
OP2 |
1.516 |
1.480 |
| P |
OP1 |
1.513 |
1.610 |
| P |
OP3 |
1.606 |
1.610 |
| OP1 |
H1 |
0.950 |
0.966 |
| C5' |
H2 |
1.101 |
1.091 |
| C5' |
H3 |
1.100 |
1.090 |
| C4' |
H4 |
1.100 |
1.090 |
| C3' |
H5 |
1.100 |
1.089 |
| O3' |
H6 |
0.950 |
0.967 |
| C2' |
H7 |
1.100 |
1.090 |
| C2' |
H8 |
1.100 |
1.090 |
| C1' |
H9 |
1.100 |
1.090 |
| N3 |
H10 |
1.001 |
0.970 |
| N2 |
H11 |
1.000 |
0.969 |
| N2 |
H12 |
0.999 |
0.970 |
| C10 |
H13 |
1.100 |
1.090 |
| C10 |
H14 |
1.100 |
1.090 |
| C10 |
H15 |
1.100 |
1.089 |
| C13 |
H16 |
1.080 |
1.080 |
| C14 |
H17 |
1.080 |
1.080 |
| C15 |
H18 |
1.080 |
1.079 |
| C16 |
H19 |
1.080 |
1.080 |
| C17 |
H20 |
1.080 |
1.080 |
| OP3 |
H21 |
0.950 |
0.968 |
Bond Angles for 6FK
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C15 |
C14 |
H17 |
119.6 |
119.9 |
| C15 |
C16 |
C17 |
120.5 |
120.1 |
| C16 |
C15 |
H18 |
120.6 |
119.9 |
| C15 |
C16 |
H19 |
119.7 |
120.0 |
| C14 |
C13 |
H16 |
119.8 |
120.0 |
| C17 |
C16 |
H19 |
119.7 |
120.0 |
| C16 |
C17 |
H20 |
119.7 |
120.0 |
| N4 |
C9 |
O11 |
122.8 |
120.0 |
| C10 |
C9 |
O11 |
122.3 |
120.0 |
| N7 |
C5 |
C6 |
133.9 |
134.3 |
| C5 |
C6 |
N1 |
117.7 |
118.6 |
| C5 |
C4 |
N3 |
118.8 |
118.9 |
| N9 |
C1' |
H9 |
109.8 |
110.4 |
| N9 |
C4 |
N3 |
134.3 |
134.5 |
| C1' |
C2' |
H7 |
110.9 |
110.5 |
| C1' |
C2' |
H8 |
110.9 |
110.6 |
| O4' |
C1' |
H9 |
110.6 |
110.3 |
| C4 |
N3 |
C2 |
119.4 |
120.5 |
| C4 |
N3 |
H10 |
120.3 |
119.8 |
| C2' |
C3' |
H5 |
109.3 |
110.7 |
| O4' |
C4' |
H4 |
110.5 |
110.4 |
| N3 |
C2 |
N2 |
117.7 |
118.7 |
| C2 |
N3 |
H10 |
120.3 |
119.7 |
| C3' |
C4' |
H4 |
109.5 |
110.4 |
| O3' |
C3' |
H5 |
110.6 |
110.5 |
| C3' |
O3' |
H6 |
109.5 |
114.0 |
| C2 |
N2 |
H11 |
120.0 |
120.0 |
| C2 |
N2 |
H12 |
120.0 |
120.0 |
| C4' |
C5' |
H2 |
108.6 |
109.5 |
| C4' |
C5' |
H3 |
108.7 |
109.5 |
| O5' |
P |
OP2 |
111.0 |
109.5 |
| O5' |
P |
OP3 |
103.2 |
109.5 |
| OP1 |
P |
OP2 |
113.1 |
109.5 |
| OP2 |
P |
OP3 |
108.1 |
109.5 |
| OP1 |
P |
OP3 |
108.6 |
109.4 |
| P |
OP1 |
H1 |
109.5 |
114.0 |
| P |
OP3 |
H21 |
109.5 |
114.0 |
| H2 |
C5' |
H3 |
109.5 |
109.5 |
| H7 |
C2' |
H8 |
109.5 |
110.5 |
| H11 |
N2 |
H12 |
120.0 |
120.0 |
| H13 |
C10 |
H14 |
109.4 |
109.5 |
| H13 |
C10 |
H15 |
109.5 |
109.4 |
| H14 |
C10 |
H15 |
109.5 |
109.5 |
Torsion Angles for 6FK
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C15 |
C14 |
C13 |
H16 |
180.2 |
180.0 |
| C16 |
C15 |
C14 |
H17 |
180.0 |
180.0 |
| C17 |
C16 |
C15 |
H19 |
180.0 |
179.7 |
| C15 |
C16 |
C17 |
H20 |
179.6 |
180.0 |
| C17 |
C16 |
C15 |
H18 |
180.2 |
179.7 |
| C15 |
C16 |
C17 |
H19 |
180.0 |
180.3 |
| C10 |
C9 |
N4 |
O11 |
181.1 |
180.1 |
| N4 |
C9 |
C10 |
O11 |
178.9 |
179.9 |
| C8 |
N7 |
C5 |
C6 |
179.7 |
179.8 |
| N7 |
C5 |
C6 |
N1 |
179.9 |
180.0 |
| N7 |
C5 |
C4 |
N3 |
180.2 |
180.0 |
| C8 |
N9 |
C1' |
H9 |
358.4 |
341.8 |
| C8 |
N9 |
C4 |
N3 |
180.2 |
180.2 |
| C6 |
C5 |
C4 |
N3 |
0.2 |
0.0 |
| N9 |
C4 |
C5 |
N3 |
179.3 |
180.0 |
| C5 |
C4 |
N3 |
C2 |
360.0 |
360.0 |
| C5 |
C4 |
N3 |
H10 |
180.0 |
180.0 |
| N9 |
C1' |
C2' |
H7 |
229.0 |
24.2 |
| N9 |
C1' |
C2' |
H8 |
350.9 |
261.5 |
| O4' |
C1' |
N9 |
H9 |
234.9 |
237.8 |
| C5 |
C4 |
N9 |
N3 |
180.9 |
180.0 |
| C4 |
N9 |
C1' |
H9 |
180.4 |
162.1 |
| N9 |
C4 |
N3 |
C2 |
180.9 |
180.0 |
| N9 |
C4 |
N3 |
H10 |
0.9 |
0.0 |
| C1' |
C2' |
C3' |
H5 |
268.8 |
241.3 |
| H7 |
C2' |
C1' |
H8 |
238.2 |
122.6 |
| N9 |
C1' |
O4' |
H9 |
124.8 |
122.2 |
| O4' |
C1' |
C2' |
H7 |
106.9 |
265.3 |
| O4' |
C1' |
C2' |
H8 |
228.7 |
142.6 |
| C1' |
O4' |
C4' |
H4 |
266.9 |
281.5 |
| C4 |
N3 |
C2 |
N2 |
180.0 |
180.0 |
| C2 |
N3 |
C4 |
H10 |
180.0 |
180.0 |
| C2' |
C3' |
C4' |
H4 |
86.8 |
95.0 |
| O3' |
C3' |
C2' |
H5 |
238.5 |
237.3 |
| C2' |
C3' |
O3' |
H6 |
180.0 |
65.4 |
| C3' |
C4' |
O4' |
H4 |
116.9 |
118.9 |
| O4' |
C4' |
C5' |
H2 |
174.8 |
308.0 |
| O4' |
C4' |
C5' |
H3 |
293.9 |
187.9 |
| C5 |
C6 |
N1 |
C2 |
359.9 |
359.9 |
| N1 |
C2 |
N3 |
H10 |
179.8 |
180.0 |
| N1 |
C2 |
N2 |
H11 |
0.0 |
180.0 |
| N1 |
C2 |
N2 |
H12 |
180.0 |
0.1 |
| C4 |
N3 |
C2 |
H10 |
180.0 |
180.0 |
| N3 |
C2 |
N2 |
H11 |
179.8 |
359.9 |
| N3 |
C2 |
N2 |
H12 |
359.7 |
180.0 |
| O4' |
C4' |
C3' |
H4 |
242.4 |
241.1 |
| C3' |
C4' |
C5' |
H2 |
290.0 |
63.5 |
| C3' |
C4' |
C5' |
H3 |
49.1 |
303.4 |
| C2' |
C3' |
O3' |
H5 |
120.8 |
122.8 |
| O3' |
C3' |
C4' |
H4 |
327.3 |
336.4 |
| N2 |
C2 |
N3 |
H10 |
0.1 |
0.1 |
| H11 |
N2 |
C2 |
H12 |
180.0 |
179.9 |
| H2 |
C5' |
C4' |
H3 |
241.0 |
120.1 |
| C5' |
O5' |
P |
OP2 |
231.8 |
55.0 |
| C5' |
O5' |
P |
OP3 |
116.2 |
295.0 |
| OP1 |
P |
O5' |
OP2 |
127.7 |
120.0 |
| OP2 |
P |
O5' |
OP3 |
115.6 |
120.0 |
| OP1 |
P |
O5' |
OP3 |
243.3 |
240.0 |
| O5' |
P |
OP1 |
H1 |
233.5 |
180.0 |
| O5' |
P |
OP3 |
H21 |
117.6 |
300.0 |
| O5' |
P |
OP2 |
OP3 |
247.5 |
240.0 |
| OP1 |
P |
OP2 |
OP3 |
120.3 |
120.0 |
| OP2 |
P |
OP1 |
H1 |
0.0 |
300.0 |
| OP2 |
P |
OP3 |
H21 |
0.0 |
180.0 |
| O5' |
P |
OP1 |
OP2 |
233.5 |
240.0 |
| O5' |
P |
OP1 |
OP3 |
113.4 |
120.0 |
| OP2 |
P |
OP1 |
OP3 |
240.0 |
240.0 |
| OP1 |
P |
OP3 |
H21 |
236.9 |
60.0 |
| O5' |
P |
OP3 |
OP2 |
117.6 |
120.0 |
| OP1 |
P |
OP3 |
OP2 |
236.9 |
240.0 |
| OP3 |
P |
OP1 |
H1 |
120.0 |
60.0 |
| H1 |
OP1 |
P |
OP2 |
0.0 |
300.0 |
| H1 |
OP1 |
P |
OP3 |
120.0 |
60.0 |
| C4' |
C5' |
H2 |
H3 |
118.5 |
239.9 |
| C4' |
C5' |
H3 |
H2 |
241.5 |
120.1 |
| H4 |
C4' |
C5' |
H2 |
49.3 |
185.7 |
| H4 |
C4' |
C5' |
H3 |
168.3 |
65.7 |
| H5 |
C3' |
C4' |
H4 |
204.5 |
213.8 |
| H5 |
C3' |
O3' |
H6 |
59.2 |
302.6 |
| H6 |
O3' |
C3' |
H5 |
59.2 |
302.6 |
| C1' |
C2' |
H7 |
H8 |
122.7 |
237.3 |
| H7 |
C2' |
C3' |
H5 |
149.8 |
359.9 |
| C1' |
C2' |
H8 |
H7 |
237.4 |
122.7 |
| H8 |
C2' |
C3' |
H5 |
27.9 |
122.5 |
| H9 |
C1' |
C2' |
H7 |
347.1 |
146.5 |
| H9 |
C1' |
C2' |
H8 |
109.0 |
23.8 |
| C4 |
N3 |
H10 |
C2 |
180.0 |
180.0 |
| H10 |
N3 |
C2 |
N2 |
0.1 |
0.1 |
| C2 |
N2 |
H11 |
H12 |
180.0 |
180.1 |
| C2 |
N2 |
H12 |
H11 |
180.0 |
179.9 |
| H13 |
C10 |
C9 |
O11 |
0.0 |
185.1 |
| H14 |
C10 |
H13 |
H15 |
120.0 |
120.0 |
| H14 |
C10 |
C9 |
O11 |
120.0 |
305.1 |
| H13 |
C10 |
H14 |
H15 |
240.0 |
240.0 |
| H15 |
C10 |
C9 |
O11 |
240.0 |
65.1 |
| H13 |
C10 |
H15 |
H14 |
120.0 |
120.0 |
| H17 |
C14 |
C13 |
H16 |
0.2 |
0.1 |
| H18 |
C15 |
C14 |
H17 |
360.0 |
360.0 |
| H18 |
C15 |
C16 |
C17 |
180.2 |
179.7 |
| H18 |
C15 |
C16 |
H19 |
0.2 |
360.0 |
| C15 |
C16 |
H19 |
C17 |
180.0 |
179.7 |
| H19 |
C16 |
C15 |
H18 |
0.2 |
360.0 |
| H19 |
C16 |
C17 |
H20 |
359.5 |
359.8 |
| H20 |
C17 |
C16 |
H19 |
359.5 |
359.8 |