Atom Nomenclature for 6EU

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 6EU

Atom Name (V3) Atom Name (V2)
CBT C1
OAH O1
CBQ C2
CBO C3
CBS C4
OAI O2
CBR C5
CBP C6
CBN C7
CBM C8
CBK C9
OAG O3
OAF O4
CBC C10
CAX C11
CAS C12
CAK C13
CAU C14
CAR C15
OAD O5
CAZ C16
OAE O6
CBA C17
CBF C18
CAW C19
CAO C20
CAJ C21
OAA O7
CAN C22
CAT C23
CAP C24
CAM C25
CAV C26
CBB C27
CBD C28
OAC O8
CAL C29
OAB O9
CAQ C30
CAY C31
CBE C32
CBG C33
CBI C34
CBL C35
CBJ C36
CBH C37
H1 H1
H2 H2
H3 H3
HBS H4
HAI H5
HBU H6
HBT H7
H4 H8
H5 H9
H6 H10
H7 H11
H8 H12
H9 H13
H10 H14
H11 H15
HAD H16
H12 H17
H13 H18
H14 H19
H15 H20
H16 H21
H17 H22
H18 H23
H19 H24
H20 H25
H21 H26
H22 H27
H24 H29
H25 H30
H27 H32
H28 H33
H29 H34
H30 H35
H31 H36
H32 H37
HBL H38
HBN H39
HBP H40
HBO H41
HBM H42