PDB Chemical Component 6EM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 6EM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C9 |
N4 |
1.507 |
1.470 |
| C10 |
N4 |
1.483 |
1.469 |
| C8 |
N4 |
1.474 |
1.469 |
| N4 |
C3 |
1.530 |
1.468 |
| N7 |
C5 |
1.341 |
1.348 |
| C3 |
C5 |
1.498 |
1.507 |
| C3 |
C2 |
1.573 |
1.530 |
| C5 |
O6 |
1.214 |
1.214 |
| C1 |
C2 |
1.533 |
1.531 |
| C1 |
H1 |
1.100 |
1.090 |
| C1 |
H2 |
1.100 |
1.090 |
| C1 |
H3 |
1.100 |
1.090 |
| C2 |
H4 |
1.100 |
1.089 |
| C2 |
H5 |
1.100 |
1.090 |
| C3 |
H6 |
1.100 |
1.090 |
| C8 |
H7 |
1.100 |
1.090 |
| C8 |
H8 |
1.100 |
1.089 |
| C8 |
H9 |
1.100 |
1.091 |
| C9 |
H10 |
1.100 |
1.090 |
| C9 |
H11 |
1.100 |
1.090 |
| C9 |
H12 |
1.100 |
1.089 |
| C10 |
H13 |
1.100 |
1.090 |
| C10 |
H14 |
1.100 |
1.090 |
| C10 |
H15 |
1.100 |
1.091 |
| N7 |
H16 |
1.000 |
0.970 |
| N7 |
H17 |
1.000 |
0.970 |
Bond Angles for 6EM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C9 |
N4 |
C10 |
102.8 |
109.4 |
| C8 |
N4 |
C9 |
109.4 |
109.5 |
| N4 |
C9 |
H10 |
109.5 |
109.4 |
| N4 |
C9 |
H11 |
109.5 |
109.5 |
| N4 |
C9 |
H12 |
109.5 |
109.5 |
| C8 |
N4 |
C10 |
104.8 |
109.5 |
| N4 |
C10 |
H13 |
109.5 |
109.5 |
| N4 |
C10 |
H14 |
109.5 |
109.5 |
| N4 |
C10 |
H15 |
109.5 |
109.4 |
| N4 |
C8 |
H7 |
109.5 |
109.5 |
| N4 |
C8 |
H8 |
109.4 |
109.5 |
| N4 |
C8 |
H9 |
109.5 |
109.4 |
| N4 |
C3 |
H6 |
105.0 |
109.5 |
| C3 |
C5 |
O6 |
115.8 |
119.9 |
| C5 |
C3 |
H6 |
105.3 |
109.4 |
| C3 |
C2 |
H4 |
105.4 |
109.5 |
| C3 |
C2 |
H5 |
105.4 |
109.5 |
| C2 |
C1 |
H1 |
109.5 |
109.5 |
| C2 |
C1 |
H2 |
109.4 |
109.5 |
| C2 |
C1 |
H3 |
109.4 |
109.4 |
| C1 |
C2 |
H4 |
105.5 |
109.4 |
| C1 |
C2 |
H5 |
105.4 |
109.4 |
| H1 |
C1 |
H2 |
109.5 |
109.5 |
| H1 |
C1 |
H3 |
109.5 |
109.5 |
| H2 |
C1 |
H3 |
109.5 |
109.5 |
| H4 |
C2 |
H5 |
109.5 |
109.5 |
| H7 |
C8 |
H8 |
109.5 |
109.5 |
| H7 |
C8 |
H9 |
109.5 |
109.5 |
| H8 |
C8 |
H9 |
109.5 |
109.5 |
| H10 |
C9 |
H11 |
109.5 |
109.4 |
| H10 |
C9 |
H12 |
109.5 |
109.5 |
| H11 |
C9 |
H12 |
109.4 |
109.5 |
| H13 |
C10 |
H14 |
109.5 |
109.5 |
| H13 |
C10 |
H15 |
109.4 |
109.5 |
| H14 |
C10 |
H15 |
109.5 |
109.5 |
| H16 |
N7 |
H17 |
120.0 |
120.1 |
Torsion Angles for 6EM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C8 |
N4 |
C9 |
C10 |
110.9 |
240.0 |
| C9 |
N4 |
C10 |
H13 |
180.0 |
320.3 |
| C9 |
N4 |
C10 |
H14 |
300.0 |
80.4 |
| C9 |
N4 |
C10 |
H15 |
60.0 |
200.3 |
| C9 |
N4 |
C8 |
H7 |
180.0 |
68.8 |
| C9 |
N4 |
C8 |
H8 |
300.0 |
188.8 |
| C9 |
N4 |
C8 |
H9 |
60.0 |
308.8 |
| C9 |
N4 |
C3 |
H6 |
149.3 |
321.2 |
| H10 |
C9 |
N4 |
H11 |
240.0 |
240.1 |
| H10 |
C9 |
N4 |
H12 |
120.0 |
120.0 |
| H11 |
C9 |
N4 |
H12 |
240.0 |
239.9 |
| C8 |
N4 |
C10 |
C9 |
245.6 |
120.0 |
| C10 |
N4 |
C9 |
H10 |
180.0 |
187.1 |
| C10 |
N4 |
C9 |
H11 |
300.0 |
307.0 |
| C10 |
N4 |
C9 |
H12 |
60.0 |
67.1 |
| C10 |
N4 |
C8 |
H7 |
289.7 |
308.8 |
| C10 |
N4 |
C8 |
H8 |
49.6 |
68.9 |
| C10 |
N4 |
C8 |
H9 |
169.6 |
188.9 |
| C10 |
N4 |
C3 |
H6 |
33.2 |
81.2 |
| H13 |
C10 |
N4 |
H14 |
240.0 |
239.9 |
| H13 |
C10 |
N4 |
H15 |
120.0 |
120.0 |
| H14 |
C10 |
N4 |
H15 |
240.0 |
240.0 |
| C9 |
N4 |
C8 |
C10 |
250.4 |
120.0 |
| C8 |
N4 |
C9 |
H10 |
290.9 |
67.1 |
| C8 |
N4 |
C9 |
H11 |
51.0 |
187.0 |
| C8 |
N4 |
C9 |
H12 |
170.9 |
307.1 |
| C8 |
N4 |
C10 |
H13 |
65.6 |
80.3 |
| C8 |
N4 |
C10 |
H14 |
185.7 |
200.4 |
| C8 |
N4 |
C10 |
H15 |
305.6 |
320.3 |
| C8 |
N4 |
C3 |
H6 |
279.3 |
201.2 |
| H7 |
C8 |
N4 |
H8 |
240.0 |
239.9 |
| H7 |
C8 |
N4 |
H9 |
120.0 |
119.9 |
| H8 |
C8 |
N4 |
H9 |
240.0 |
240.0 |
| C5 |
C3 |
N4 |
H6 |
250.4 |
240.0 |
| N4 |
C3 |
C2 |
H4 |
106.3 |
173.4 |
| N4 |
C3 |
C2 |
H5 |
222.1 |
53.2 |
| N7 |
C5 |
C3 |
H6 |
166.9 |
23.3 |
| N4 |
C3 |
C5 |
H6 |
109.3 |
120.0 |
| C5 |
C3 |
C2 |
H4 |
342.6 |
53.3 |
| C5 |
C3 |
C2 |
H5 |
98.3 |
293.2 |
| C3 |
C2 |
C1 |
H1 |
180.0 |
325.7 |
| C3 |
C2 |
C1 |
H2 |
300.0 |
85.6 |
| C3 |
C2 |
C1 |
H3 |
60.0 |
205.7 |
| C1 |
C2 |
C3 |
H4 |
237.9 |
120.0 |
| C1 |
C2 |
C3 |
H5 |
122.1 |
240.1 |
| H4 |
C2 |
C3 |
H5 |
244.2 |
120.1 |
| O6 |
C5 |
C3 |
H6 |
343.7 |
203.3 |
| C3 |
C2 |
C1 |
H4 |
122.1 |
240.0 |
| C3 |
C2 |
C1 |
H5 |
237.9 |
119.9 |
| H1 |
C1 |
C2 |
H2 |
240.0 |
240.0 |
| H1 |
C1 |
C2 |
H3 |
120.0 |
120.0 |
| H2 |
C1 |
C2 |
H3 |
240.0 |
240.0 |
| H4 |
C2 |
C1 |
H5 |
115.8 |
239.9 |
| C2 |
C1 |
H1 |
H2 |
120.0 |
120.0 |
| C2 |
C1 |
H1 |
H3 |
240.0 |
240.0 |
| H1 |
C1 |
C2 |
H4 |
57.9 |
85.7 |
| H1 |
C1 |
C2 |
H5 |
302.1 |
205.7 |
| H2 |
C1 |
H1 |
H3 |
120.0 |
120.1 |
| C2 |
C1 |
H2 |
H1 |
240.0 |
240.0 |
| C2 |
C1 |
H2 |
H3 |
120.0 |
119.9 |
| H2 |
C1 |
C2 |
H4 |
177.9 |
205.7 |
| H2 |
C1 |
C2 |
H5 |
62.1 |
325.7 |
| H1 |
C1 |
H2 |
H3 |
240.0 |
239.9 |
| C2 |
C1 |
H3 |
H1 |
120.0 |
120.0 |
| C2 |
C1 |
H3 |
H2 |
240.0 |
240.0 |
| H3 |
C1 |
C2 |
H4 |
297.9 |
325.7 |
| H3 |
C1 |
C2 |
H5 |
182.1 |
85.7 |
| H1 |
C1 |
H3 |
H2 |
120.0 |
120.0 |
| C3 |
C2 |
H4 |
H5 |
113.0 |
239.9 |
| H4 |
C2 |
C1 |
H1 |
57.9 |
85.7 |
| H4 |
C2 |
C1 |
H2 |
177.9 |
205.7 |
| H4 |
C2 |
C1 |
H3 |
297.9 |
325.7 |
| C1 |
C2 |
H4 |
H5 |
247.0 |
120.0 |
| C3 |
C2 |
H5 |
H4 |
247.0 |
120.1 |
| H5 |
C2 |
C1 |
H1 |
302.1 |
205.7 |
| H5 |
C2 |
C1 |
H2 |
62.1 |
325.7 |
| H5 |
C2 |
C1 |
H3 |
182.1 |
85.7 |
| C1 |
C2 |
H5 |
H4 |
113.0 |
240.0 |
| H6 |
C3 |
C5 |
O6 |
343.7 |
203.3 |
| H6 |
C3 |
C2 |
H4 |
230.6 |
293.4 |
| H6 |
C3 |
C2 |
H5 |
346.4 |
173.3 |
| H7 |
C8 |
N4 |
C9 |
180.0 |
68.8 |
| H7 |
C8 |
N4 |
C10 |
289.7 |
308.8 |
| N4 |
C8 |
H7 |
H8 |
120.0 |
120.0 |
| N4 |
C8 |
H7 |
H9 |
240.0 |
240.1 |
| H8 |
C8 |
H7 |
H9 |
120.0 |
120.1 |
| H8 |
C8 |
N4 |
C9 |
300.0 |
188.8 |
| H8 |
C8 |
N4 |
C10 |
49.6 |
68.9 |
| N4 |
C8 |
H8 |
H7 |
240.0 |
240.0 |
| N4 |
C8 |
H8 |
H9 |
120.0 |
119.9 |
| H7 |
C8 |
H8 |
H9 |
240.0 |
240.0 |
| H9 |
C8 |
N4 |
C9 |
60.0 |
308.8 |
| H9 |
C8 |
N4 |
C10 |
169.6 |
188.9 |
| N4 |
C8 |
H9 |
H7 |
120.0 |
119.9 |
| N4 |
C8 |
H9 |
H8 |
240.0 |
240.0 |
| H7 |
C8 |
H9 |
H8 |
120.0 |
120.1 |
| H10 |
C9 |
N4 |
C10 |
180.0 |
187.1 |
| N4 |
C9 |
H10 |
H11 |
120.0 |
119.9 |
| N4 |
C9 |
H10 |
H12 |
240.0 |
240.0 |
| H11 |
C9 |
H10 |
H12 |
120.0 |
120.1 |
| H11 |
C9 |
N4 |
C10 |
300.0 |
307.0 |
| N4 |
C9 |
H11 |
H10 |
240.0 |
240.1 |
| N4 |
C9 |
H11 |
H12 |
120.0 |
120.0 |
| H10 |
C9 |
H11 |
H12 |
240.0 |
240.0 |
| H12 |
C9 |
N4 |
C10 |
60.0 |
67.1 |
| N4 |
C9 |
H12 |
H10 |
120.0 |
120.0 |
| N4 |
C9 |
H12 |
H11 |
240.0 |
240.0 |
| H10 |
C9 |
H12 |
H11 |
120.0 |
120.0 |
| N4 |
C10 |
H13 |
H14 |
120.0 |
120.0 |
| N4 |
C10 |
H13 |
H15 |
240.0 |
240.1 |
| H14 |
C10 |
H13 |
H15 |
120.0 |
120.0 |
| N4 |
C10 |
H14 |
H13 |
240.0 |
240.0 |
| N4 |
C10 |
H14 |
H15 |
120.0 |
119.9 |
| H13 |
C10 |
H14 |
H15 |
240.0 |
240.0 |
| N4 |
C10 |
H15 |
H13 |
120.0 |
120.0 |
| N4 |
C10 |
H15 |
H14 |
240.0 |
240.0 |
| H13 |
C10 |
H15 |
H14 |
120.0 |
120.1 |