Atom Nomenclature for 6E2

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 6E2

Atom Name (V3) Atom Name (V2)
C28 C1
C30 C2
O31 O1
C29 C3
C27 C4
N26 N1
C25 C5
C24 C6
C23 C7
O22 O2
C6 C8
C4 C9
C2 C10
N9 N2
O20 O3
C21 C11
C5 C12
C3 C13
C1 C14
C7 C15
N32 N3
C33 C16
C34 C17
N8 N4
C10 C18
N11 N5
C12 C19
O13 O4
C14 C20
C16 C21
N18 N6
C19 C22
N35 N7
N17 N8
C15 C23
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H18 H18
H28 H28