PDB Chemical Component 6DY

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 6DY

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C16	C15	1.392	1.382
C16	C17	1.386	1.383
C15	C14	1.409	1.383
C10	C09	1.518	1.530
C10	C11	1.519	1.531
C09	N08	1.544	1.469
C17	C18	1.407	1.381
C14	C11	1.524	1.506
C14	C19	1.413	1.383
C11	C12	1.568	1.532
C07	N08	1.499	1.470
C07	C06	1.535	1.529
N08	C13	1.550	1.468
C18	C19	1.402	1.383
C12	C13	1.527	1.531
C06	N05	1.386	1.465
N05	C04	1.355	1.379
C04	N20	1.315	1.323
C04	N03	1.413	1.336
N20	C21	1.343	1.340
N03	C02	1.363	1.320
C21	N22	1.310	1.323
C21	N25	1.458	1.370
N22	C23	1.396	1.339
C02	N25	1.361	1.365
C02	N01	1.383	1.370
N25	N24	1.339	1.400
C23	N24	1.348	1.320
C23	C26	1.415	1.477
C26	C27	1.367	1.359
C26	O30	1.376	1.347
C27	C28	1.479	1.409
O30	C29	1.404	1.343
C28	C29	1.420	1.348
C10	H1	1.100	1.090
C10	H2	1.100	1.090
C13	H3	1.100	1.090
C13	H4	1.100	1.090
C15	H5	1.080	1.080
C17	H6	1.080	1.080
C18	H7	1.080	1.081
C19	H8	1.080	1.079
C16	H9	1.081	1.080
C12	H10	1.100	1.089
C12	H11	1.099	1.090
C11	H12	1.100	1.090
N01	H13	1.000	0.969
N01	H14	1.000	0.970
N05	H15	1.000	0.970
C06	H16	1.100	1.090
C06	H17	1.100	1.091
C07	H18	1.100	1.091
C07	H19	1.100	1.090
C09	H21	1.100	1.091
C09	H22	1.100	1.089
C27	H23	1.080	1.081
C28	H24	1.080	1.080
C29	H25	1.080	1.080

Bond Angles for 6DY

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C16	C15	C14	125.0	120.0
C16	C15	H5	117.5	120.0
C16	C17	H6	121.6	120.0
C15	C14	C11	122.4	120.0
C15	C14	C19	112.9	120.0
C14	C15	H5	117.5	120.0
C11	C10	C09	115.8	109.3
C10	C09	N08	107.5	109.5
C09	C10	H1	107.9	109.5
C09	C10	H2	107.9	109.5
C10	C09	H21	110.0	109.4
C10	C09	H22	110.0	109.5
C10	C11	C14	115.5	109.5
C10	C11	C12	106.3	109.1
C11	C10	H1	107.9	109.5
C11	C10	H2	107.9	109.5
C10	C11	H12	106.4	109.5
C17	C18	C19	121.4	120.1
C18	C17	H6	121.6	120.0
C17	C18	H7	119.3	120.0
C14	C11	H12	106.4	109.6
C14	C19	H8	118.4	120.0
C11	C12	H10	109.2	109.5
C11	C12	H11	109.2	109.5
N08	C07	H18	110.4	109.4
N08	C07	H19	110.4	109.5
C07	C06	H16	109.4	109.5
C07	C06	H17	109.4	109.5
N08	C13	H3	109.0	109.5
N08	C13	H4	109.1	109.5
C19	C18	H7	119.3	119.9
C18	C19	H8	118.4	120.1
C12	C13	H3	109.1	109.4
C12	C13	H4	109.0	109.4
C06	N05	H15	105.5	120.0
N05	C04	N20	122.5	119.4
N20	C21	N22	131.4	133.3
N20	C21	N25	121.5	119.2
N03	C02	N25	119.5	119.4
N22	C21	N25	107.0	107.5
C21	N22	C23	106.3	109.7
C21	N25	C02	118.0	119.5
C21	N25	N24	109.2	106.6
N22	C23	N24	112.5	109.3
N22	C23	C26	123.9	125.4
C02	N25	N24	132.7	133.9
C02	N01	H13	109.5	120.1
C02	N01	H14	109.5	120.0
N24	C23	C26	123.6	125.3
C23	C26	C27	133.7	125.9
C23	C26	O30	116.8	125.9
C27	C26	O30	109.5	108.1
C26	C27	C28	108.0	106.8
C26	C27	H23	126.0	126.6
C26	O30	C29	109.4	109.4
C27	C28	C29	105.0	107.0
C28	C27	H23	126.0	126.6
C27	C28	H24	127.5	126.5
O30	C29	H25	126.0	125.7
C29	C28	H24	127.5	126.5
C28	C29	H25	125.9	125.6
H1	C10	H2	109.4	109.6
H3	C13	H4	109.5	109.5
H10	C12	H11	109.5	109.5
H13	N01	H14	109.4	120.0
H16	C06	H17	109.5	109.4
H18	C07	H19	109.5	109.4
H21	C09	H22	109.5	109.5

Torsion Angles for 6DY

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C16	C15	C14	C11	178.5	179.7
C16	C15	C14	C19	1.7	359.7
C14	C15	C16	H5	180.0	180.3
C17	C16	C15	C14	359.3	360.0
C17	C16	C15	H5	179.2	179.7
C18	C17	C16	H6	180.0	179.7
C16	C17	C18	H7	179.4	180.2
C16	C15	C14	H5	180.0	179.7
C10	C11	C14	C15	287.4	240.0
C15	C14	C11	H12	45.2	0.1
C15	C14	C19	H8	177.9	180.0
C09	C10	C11	C14	172.1	182.5
C09	C10	C11	C12	301.8	302.3
C11	C10	C09	H1	239.1	119.9
C11	C10	C09	H2	120.9	240.1
C09	C10	C11	H12	54.3	62.3
H1	C10	C09	H2	241.9	120.2
H21	C09	C10	H22	239.4	240.0
C15	C14	C11	C10	287.4	240.0
C11	C10	C09	N08	60.9	59.2
C09	C10	C11	H1	120.9	240.1
C09	C10	C11	H2	239.1	119.9
C11	C10	C09	H21	180.6	179.2
C11	C10	C09	H22	301.2	299.2
C14	C11	C10	H12	117.7	120.2
C10	C11	C12	H10	175.6	297.7
C10	C11	C12	H11	295.3	177.6
H1	C10	C11	H2	118.1	239.9
N08	C09	C10	H1	181.8	299.3
N08	C09	C10	H2	300.0	179.1
C10	C09	N08	H21	119.7	120.0
C10	C09	N08	H22	240.3	240.0
C09	N08	C07	H18	312.0	174.2
C09	N08	C07	H19	73.1	54.3
C09	N08	C13	H3	181.4	301.8
C09	N08	C13	H4	300.9	181.8
C16	C17	C18	H6	180.0	180.3
C19	C18	C17	H7	180.0	180.0
C17	C18	C19	H8	181.7	180.0
C15	C14	C11	C19	183.5	180.0
C11	C14	C15	H5	358.6	360.0
C14	C11	C10	C09	172.1	182.5
C10	C11	C14	C12	125.1	119.7
C14	C11	C10	H1	51.1	302.4
C14	C11	C10	H2	293.0	62.5
C10	C11	C14	H12	242.3	239.9
C11	C14	C19	H8	1.1	0.0
C14	C11	C12	H10	305.2	57.6
C14	C11	C12	H11	64.9	297.5
C15	C14	C19	C11	176.8	180.0
C19	C14	C15	H5	181.7	180.0
C10	C11	C14	C19	104.0	59.9
C14	C19	C18	H7	181.7	179.5
C18	C19	C14	H8	180.0	180.6
C15	C14	C11	C12	162.4	120.3
C12	C11	C10	C09	301.8	302.3
C10	C11	C12	C14	230.4	240.1
C12	C11	C10	H1	180.9	62.3
C12	C11	C10	H2	62.7	182.4
C10	C11	C12	H12	112.9	119.9
C11	C12	C13	H3	179.5	60.8
C11	C12	C13	H4	60.0	180.8
H10	C12	C11	H11	240.3	120.1
C10	C09	N08	C07	188.5	174.1
N08	C07	C06	H16	305.2	60.0
N08	C07	C06	H17	65.1	300.0
C07	N08	C13	H3	291.8	65.9
C07	N08	C13	H4	51.3	305.8
H18	C07	N08	H19	238.8	119.9
C07	C06	N05	H15	207.7	0.0
H16	C06	C07	H17	240.1	120.0
C10	C09	N08	C13	301.8	298.2
C12	C13	N08	H3	239.7	119.9
C12	C13	N08	H4	120.2	240.0
H3	C13	N08	H4	240.5	120.0
C15	C14	C19	C18	357.9	0.5
C19	C18	C17	H6	179.5	180.0
C17	C18	C19	H7	180.0	180.0
C14	C19	C18	H8	180.0	179.4
C10	C11	C12	C13	55.4	57.7
N08	C13	C12	H3	120.2	240.0
N08	C13	C12	H4	239.7	120.0
H3	C13	C12	H4	119.5	240.0
C06	N05	C04	N20	177.4	180.0
C04	N20	C21	N22	179.3	180.0
C04	N20	C21	N25	0.5	359.7
C04	N03	C02	N25	358.7	359.8
N22	C21	N20	N25	178.8	180.4
N20	C21	N22	C23	180.1	179.7
N20	C21	N25	C02	359.0	0.2
N20	C21	N25	N24	182.2	180.3
C21	N25	C02	N03	1.5	0.1
N03	C02	N25	N24	177.2	180.0
N03	C02	N01	H13	0.0	180.0
N03	C02	N01	H14	120.0	360.0
N20	C21	N22	N25	181.0	179.7
N22	C21	N25	C02	179.9	179.9
N22	C21	N25	N24	3.2	360.0
C21	N22	C23	N24	358.4	0.0
C21	N22	C23	C26	181.4	179.9
N20	C21	N25	N22	179.1	180.3
N03	C02	N25	C21	1.5	0.1
N25	C21	N22	C23	359.1	0.0
C02	N25	C21	N24	176.7	180.0
C23	N22	C21	N25	359.1	0.0
N24	C23	N22	C26	177.0	180.1
N22	C23	C26	C27	341.2	0.1
N22	C23	C26	O30	160.8	179.8
C21	N25	C02	N24	184.2	180.1
N25	C02	N01	H13	180.6	0.1
N25	C02	N01	H14	300.5	180.0
C21	N25	C02	N01	180.9	180.0
H13	N01	C02	H14	240.0	180.0
C21	N25	N24	C02	176.0	179.9
N25	N24	C23	C26	180.6	180.1
C21	N25	N24	C23	356.0	0.0
N22	C23	N24	C26	183.0	179.9
C02	N25	N24	C23	180.0	180.1
N24	C23	C26	C27	164.5	180.0
N24	C23	C26	O30	344.2	359.7
N22	C23	C26	N24	176.6	180.1
C27	C26	C23	O30	180.4	180.3
C23	C26	C27	C28	178.3	180.0
C23	C26	C27	H23	358.2	359.9
C23	C26	O30	C29	181.5	179.9
C23	C26	C27	O30	179.6	179.7
C27	C26	O30	C29	1.2	359.6
C26	C27	C28	C29	1.1	360.0
C28	C27	C26	H23	180.0	180.0
C26	C27	C28	H24	181.0	180.0
C23	C26	O30	C27	180.3	180.3
O30	C26	C27	C28	358.6	0.2
O30	C26	C27	H23	178.6	180.2
C26	O30	C29	H25	179.5	180.1
C28	C27	C26	O30	358.6	0.2
C26	C27	C28	H23	180.0	180.0
C29	C28	C27	H24	180.0	180.0
C27	C28	C29	H25	179.7	180.0
O30	C29	C28	H24	179.7	179.8
C28	C29	O30	H25	180.0	180.2
C26	O30	C29	C28	359.5	0.4
C29	C28	C27	H23	181.1	180.0
C27	C28	C29	H24	180.0	180.0
O30	C29	C28	H25	180.0	179.8
C11	C10	H1	C09	125.7	240.2
H1	C10	C09	N08	181.8	299.3
C09	C10	H1	H2	117.1	239.9
H1	C10	C09	H21	301.5	59.3
H1	C10	C09	H22	62.2	179.3
H1	C10	C11	C14	51.1	302.4
H1	C10	C11	C12	180.9	62.3
C11	C10	H1	H2	242.9	120.1
H1	C10	C11	H12	293.4	182.2
C11	C10	H2	C09	234.3	119.8
H2	C10	C09	N08	300.0	179.1
C09	C10	H2	H1	242.9	120.1
H2	C10	C09	H21	59.7	299.1
H2	C10	C09	H22	180.3	59.1
H2	C10	C11	C14	293.0	62.5
H2	C10	C11	C12	62.7	182.4
C11	C10	H2	H1	117.1	239.9
H2	C10	C11	H12	175.3	302.3
N08	C13	H3	H4	119.2	240.0
C12	C13	H3	H4	240.8	120.0
N08	C13	H4	H3	240.8	120.0
C12	C13	H4	H3	119.2	240.1
C16	C15	H5	C14	180.0	180.3
H5	C15	C14	C11	358.6	360.0
H5	C15	C14	C19	181.7	180.0
H6	C17	C18	C19	179.5	180.0
H6	C17	C18	H7	359.5	359.9
C17	C18	H7	C19	180.0	180.0
H7	C18	C17	H6	359.5	359.9
H7	C18	C19	H8	1.7	0.1
H8	C19	C18	H7	1.7	0.1
H9	C16	C15	C14	179.3	180.0
H9	C16	C15	H5	359.2	359.7
H9	C16	C17	H6	0.1	0.3
C11	C12	H10	H11	119.6	239.9
H10	C12	C13	H3	59.3	180.7
H10	C12	C13	H4	299.9	300.7
C11	C12	H11	H10	240.4	120.1
H11	C12	C13	H3	299.6	300.8
H11	C12	C13	H4	180.1	60.8
H12	C11	C10	C09	54.3	62.3
C10	C11	H12	C14	123.6	120.1
C10	C11	H12	C12	247.1	240.3
H12	C11	C10	H1	293.4	182.2
H12	C11	C10	H2	175.3	302.3
H12	C11	C12	H10	62.7	177.8
H12	C11	C12	H11	182.4	57.7
C02	N01	H13	H14	120.0	180.0
C02	N01	H14	H13	240.0	180.0
H15	N05	C04	N20	55.3	360.0
C07	C06	H16	H17	119.8	240.0
H16	C06	N05	H15	87.7	120.0
C07	C06	H17	H16	240.2	120.0
H17	C06	N05	H15	327.8	240.0
N08	C07	H18	H19	121.7	240.1
H18	C07	C06	H16	185.8	179.9
H18	C07	C06	H17	305.7	60.0
N08	C07	H19	H18	238.3	119.9
H19	C07	C06	H16	64.6	299.9
H19	C07	C06	H17	184.5	180.0
C10	C09	H21	N08	241.8	240.0
H21	C09	C10	H1	301.5	59.3
H21	C09	C10	H2	59.7	299.1
C10	C09	H21	H22	120.9	120.0
C10	C09	H22	N08	118.2	120.1
H22	C09	C10	H1	62.2	179.3
H22	C09	C10	H2	180.3	59.1
C10	C09	H22	H21	239.1	240.0
H23	C27	C26	O30	178.6	180.2
C26	C27	H23	C28	180.0	180.0
H23	C27	C28	C29	181.1	180.0
H23	C27	C28	H24	1.1	0.0
C27	C28	H24	C29	180.0	180.0
H24	C28	C27	H23	1.1	0.0
H24	C28	C29	H25	359.7	360.0
H25	C29	C28	H24	359.7	360.0