PDB Chemical Component 6D0
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 6D0
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C14 |
N7 |
1.309 |
1.320 |
| C14 |
N6 |
1.338 |
1.316 |
| N7 |
C12 |
1.371 |
1.329 |
| N6 |
C13 |
1.380 |
1.328 |
| C12 |
N5 |
1.406 |
1.384 |
| C12 |
C11 |
1.433 |
1.406 |
| C13 |
C11 |
1.405 |
1.406 |
| C13 |
N3 |
1.355 |
1.371 |
| O3 |
C8 |
1.394 |
1.429 |
| O4 |
C9 |
1.419 |
1.429 |
| C11 |
N4 |
1.362 |
1.355 |
| C7 |
N3 |
1.423 |
1.466 |
| C7 |
C8 |
1.506 |
1.550 |
| C7 |
O2 |
1.451 |
1.443 |
| N3 |
C10 |
1.344 |
1.363 |
| C8 |
C9 |
1.460 |
1.552 |
| O2 |
C6 |
1.445 |
1.438 |
| C9 |
C6 |
1.532 |
1.541 |
| C2 |
C1 |
1.524 |
1.506 |
| C2 |
C3 |
1.533 |
1.530 |
| C2 |
N1 |
1.415 |
1.470 |
| N4 |
C10 |
1.321 |
1.301 |
| C6 |
C5 |
1.439 |
1.529 |
| C1 |
O1 |
1.233 |
1.208 |
| C1 |
O6 |
1.332 |
1.342 |
| C3 |
C4 |
1.513 |
1.529 |
| C5 |
N2 |
1.548 |
1.469 |
| C4 |
N2 |
1.515 |
1.469 |
| N2 |
C15 |
1.440 |
1.470 |
| C15 |
C16 |
1.524 |
1.507 |
| O5 |
C16 |
1.248 |
1.208 |
| C16 |
C17 |
1.544 |
1.506 |
| C17 |
BR1 |
1.952 |
1.966 |
| C2 |
H1 |
1.100 |
1.090 |
| N1 |
H2 |
1.000 |
1.009 |
| N1 |
H3 |
1.000 |
1.009 |
| C3 |
H5 |
1.100 |
1.090 |
| C3 |
H6 |
1.100 |
1.090 |
| C4 |
H7 |
1.100 |
1.090 |
| C4 |
H8 |
1.100 |
1.090 |
| C5 |
H10 |
1.101 |
1.090 |
| C5 |
H11 |
1.100 |
1.090 |
| C6 |
H12 |
1.100 |
1.090 |
| C7 |
H13 |
1.100 |
1.090 |
| C8 |
H14 |
1.100 |
1.090 |
| O3 |
H15 |
0.950 |
0.967 |
| C9 |
H16 |
1.100 |
1.090 |
| O4 |
H17 |
0.950 |
0.967 |
| C10 |
H18 |
1.080 |
1.080 |
| N5 |
H19 |
1.000 |
0.970 |
| N5 |
H20 |
1.001 |
0.969 |
| C14 |
H21 |
1.080 |
1.080 |
| C15 |
H22 |
1.100 |
1.090 |
| C15 |
H23 |
1.100 |
1.090 |
| C17 |
H24 |
1.100 |
1.090 |
| C17 |
H25 |
1.099 |
1.090 |
| O6 |
H26 |
0.950 |
0.967 |
Bond Angles for 6D0
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N7 |
C14 |
H21 |
118.8 |
118.7 |
| C12 |
N5 |
H19 |
109.5 |
120.0 |
| C12 |
N5 |
H20 |
109.5 |
120.0 |
| O3 |
C8 |
C9 |
110.2 |
110.8 |
| O3 |
C8 |
H14 |
111.1 |
110.9 |
| O4 |
C9 |
H16 |
111.3 |
110.6 |
| C8 |
C7 |
N3 |
113.2 |
110.6 |
| C7 |
N3 |
C10 |
126.7 |
126.3 |
| N3 |
C7 |
H13 |
110.0 |
110.5 |
| C7 |
C8 |
C9 |
103.5 |
102.1 |
| C8 |
C7 |
H13 |
108.8 |
110.6 |
| C7 |
C8 |
H14 |
109.4 |
110.9 |
| N3 |
C10 |
H18 |
124.9 |
125.0 |
| C9 |
C8 |
H14 |
110.1 |
110.9 |
| C8 |
C9 |
H16 |
110.7 |
110.5 |
| O2 |
C6 |
H12 |
109.3 |
109.9 |
| C9 |
C6 |
H12 |
108.2 |
109.8 |
| C2 |
C1 |
O6 |
118.8 |
120.0 |
| N1 |
C2 |
C3 |
111.7 |
109.5 |
| C2 |
C3 |
C4 |
118.6 |
109.5 |
| C3 |
C2 |
H1 |
107.8 |
109.5 |
| C2 |
C3 |
H5 |
107.2 |
109.4 |
| C2 |
C3 |
H6 |
107.2 |
109.4 |
| N1 |
C2 |
H1 |
109.3 |
109.4 |
| C2 |
N1 |
H2 |
109.5 |
111.0 |
| C2 |
N1 |
H3 |
109.5 |
110.9 |
| N4 |
C10 |
H18 |
124.9 |
125.0 |
| C6 |
C5 |
H10 |
108.1 |
109.5 |
| C6 |
C5 |
H11 |
108.1 |
109.5 |
| C1 |
O6 |
H26 |
109.5 |
117.0 |
| C3 |
C4 |
N2 |
115.6 |
109.5 |
| C4 |
C3 |
H5 |
107.1 |
109.5 |
| C4 |
C3 |
H6 |
107.1 |
109.5 |
| C3 |
C4 |
H7 |
107.9 |
109.5 |
| C3 |
C4 |
H8 |
107.9 |
109.5 |
| C5 |
N2 |
C15 |
109.3 |
111.0 |
| C4 |
N2 |
C15 |
108.9 |
111.0 |
| N2 |
C4 |
H7 |
107.9 |
109.5 |
| N2 |
C4 |
H8 |
107.9 |
109.4 |
| N2 |
C15 |
C16 |
117.0 |
109.4 |
| N2 |
C15 |
H22 |
107.6 |
109.5 |
| N2 |
C15 |
H23 |
107.6 |
109.5 |
| C15 |
C16 |
C17 |
120.4 |
120.0 |
| C16 |
C15 |
H22 |
107.5 |
109.5 |
| C16 |
C15 |
H23 |
107.5 |
109.5 |
| C16 |
C17 |
BR1 |
112.2 |
109.5 |
| C16 |
C17 |
H24 |
108.8 |
109.5 |
| C16 |
C17 |
H25 |
108.8 |
109.5 |
| BR1 |
C17 |
H24 |
108.8 |
109.4 |
| BR1 |
C17 |
H25 |
108.8 |
109.5 |
| H2 |
N1 |
H3 |
109.5 |
111.0 |
| H5 |
C3 |
H6 |
109.5 |
109.5 |
| H7 |
C4 |
H8 |
109.5 |
109.5 |
| H10 |
C5 |
H11 |
109.5 |
109.4 |
| H19 |
N5 |
H20 |
109.5 |
120.0 |
| H22 |
C15 |
H23 |
109.5 |
109.5 |
| H24 |
C17 |
H25 |
109.4 |
109.4 |
Torsion Angles for 6D0
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N7 |
C12 |
N5 |
H19 |
360.0 |
180.0 |
| N7 |
C12 |
N5 |
H20 |
120.0 |
0.0 |
| H19 |
N5 |
C12 |
H20 |
240.0 |
180.0 |
| C13 |
N3 |
C7 |
H13 |
13.8 |
321.9 |
| C13 |
N3 |
C10 |
H18 |
179.6 |
180.3 |
| O3 |
C8 |
C7 |
N3 |
274.3 |
273.7 |
| C7 |
C8 |
O3 |
C9 |
245.2 |
247.4 |
| O3 |
C8 |
C7 |
H13 |
36.9 |
36.4 |
| C7 |
C8 |
O3 |
H14 |
122.9 |
123.7 |
| C9 |
C8 |
O3 |
H14 |
237.8 |
236.4 |
| O3 |
C8 |
C9 |
H16 |
90.8 |
102.3 |
| O4 |
C9 |
C8 |
H14 |
203.3 |
216.0 |
| C8 |
C9 |
O4 |
H16 |
124.3 |
122.6 |
| O4 |
C9 |
C6 |
H12 |
14.9 |
358.9 |
| C11 |
N4 |
C10 |
H18 |
180.1 |
180.0 |
| N3 |
C7 |
C8 |
C9 |
155.4 |
155.6 |
| C8 |
C7 |
N3 |
H13 |
122.0 |
122.8 |
| N3 |
C7 |
C8 |
H14 |
38.1 |
37.4 |
| C7 |
N3 |
C10 |
H18 |
0.5 |
0.0 |
| O3 |
C8 |
C7 |
C9 |
118.9 |
118.1 |
| O3 |
C8 |
C7 |
H14 |
236.2 |
236.3 |
| C8 |
C7 |
N3 |
C10 |
314.7 |
265.0 |
| N3 |
C7 |
C8 |
H13 |
237.4 |
237.3 |
| C9 |
C8 |
C7 |
H14 |
117.3 |
118.2 |
| C7 |
C8 |
C9 |
H16 |
211.1 |
220.5 |
| C7 |
O2 |
C6 |
H12 |
248.6 |
267.0 |
| C10 |
N3 |
C7 |
H13 |
192.7 |
142.2 |
| N4 |
C10 |
N3 |
H18 |
180.0 |
180.0 |
| O3 |
C8 |
C9 |
H14 |
122.8 |
123.6 |
| O4 |
C9 |
C8 |
H16 |
235.3 |
237.3 |
| C9 |
C8 |
C7 |
N3 |
155.4 |
155.6 |
| C9 |
C8 |
C7 |
H13 |
278.0 |
278.3 |
| C7 |
C8 |
C9 |
H14 |
243.2 |
241.8 |
| C8 |
C9 |
C6 |
H12 |
134.3 |
117.6 |
| C9 |
C6 |
O2 |
H12 |
117.2 |
119.5 |
| O2 |
C6 |
C5 |
H10 |
210.3 |
299.5 |
| O2 |
C6 |
C5 |
H11 |
328.7 |
179.5 |
| O2 |
C6 |
C9 |
H12 |
242.1 |
240.5 |
| C9 |
C6 |
C5 |
H10 |
329.9 |
57.5 |
| C9 |
C6 |
C5 |
H11 |
88.3 |
297.5 |
| C2 |
C1 |
O6 |
H26 |
179.9 |
179.7 |
| C3 |
C2 |
C1 |
O6 |
337.8 |
280.2 |
| N1 |
C2 |
C3 |
H1 |
239.9 |
240.1 |
| C3 |
C2 |
N1 |
H2 |
57.7 |
176.0 |
| C3 |
C2 |
N1 |
H3 |
177.7 |
300.0 |
| C2 |
C3 |
C4 |
N2 |
247.2 |
180.0 |
| C4 |
C3 |
C2 |
H5 |
238.7 |
240.0 |
| C4 |
C3 |
C2 |
H6 |
121.3 |
120.0 |
| C2 |
C3 |
C4 |
H7 |
8.1 |
300.0 |
| C2 |
C3 |
C4 |
H8 |
126.4 |
60.0 |
| H5 |
C3 |
C2 |
H6 |
242.6 |
240.0 |
| N1 |
C2 |
C1 |
O6 |
214.3 |
160.2 |
| N1 |
C2 |
C3 |
C4 |
35.7 |
295.0 |
| C3 |
C2 |
N1 |
H1 |
119.2 |
119.9 |
| N1 |
C2 |
C3 |
H5 |
157.0 |
55.1 |
| N1 |
C2 |
C3 |
H6 |
274.4 |
175.0 |
| H2 |
N1 |
C2 |
H3 |
240.0 |
236.0 |
| N3 |
C10 |
N4 |
H18 |
180.0 |
180.0 |
| C6 |
C5 |
N2 |
C15 |
203.2 |
199.8 |
| H10 |
C5 |
C6 |
H11 |
241.5 |
120.0 |
| C4 |
C3 |
C2 |
H1 |
155.7 |
54.9 |
| C2 |
C3 |
C4 |
H5 |
121.3 |
120.0 |
| C2 |
C3 |
C4 |
H6 |
238.7 |
240.0 |
| C3 |
C4 |
N2 |
C15 |
163.5 |
66.1 |
| N2 |
C4 |
C3 |
H7 |
239.1 |
240.0 |
| N2 |
C4 |
C3 |
H8 |
120.9 |
120.0 |
| H5 |
C3 |
C4 |
H6 |
117.4 |
120.0 |
| H7 |
C4 |
C3 |
H8 |
241.7 |
240.0 |
| C4 |
N2 |
C5 |
C15 |
237.5 |
236.1 |
| C5 |
N2 |
C4 |
H7 |
165.3 |
70.0 |
| C5 |
N2 |
C4 |
H8 |
47.1 |
310.0 |
| C5 |
N2 |
C15 |
C16 |
301.6 |
72.9 |
| C5 |
N2 |
C15 |
H22 |
62.7 |
192.9 |
| C5 |
N2 |
C15 |
H23 |
180.5 |
312.9 |
| N2 |
C4 |
C3 |
H5 |
125.9 |
60.0 |
| N2 |
C4 |
C3 |
H6 |
8.5 |
300.0 |
| C3 |
C4 |
N2 |
H7 |
120.9 |
120.0 |
| C3 |
C4 |
N2 |
H8 |
239.1 |
240.0 |
| C5 |
N2 |
C4 |
C15 |
122.7 |
123.9 |
| C4 |
N2 |
C15 |
C16 |
67.5 |
196.8 |
| C4 |
N2 |
C15 |
H22 |
188.6 |
316.8 |
| C4 |
N2 |
C15 |
H23 |
306.4 |
76.8 |
| H7 |
C4 |
N2 |
H8 |
118.3 |
120.0 |
| C15 |
N2 |
C4 |
H7 |
42.6 |
306.1 |
| C15 |
N2 |
C4 |
H8 |
284.4 |
186.1 |
| N2 |
C15 |
C16 |
C17 |
190.7 |
180.2 |
| C16 |
C15 |
N2 |
H22 |
238.9 |
240.0 |
| C16 |
C15 |
N2 |
H23 |
121.1 |
120.0 |
| H22 |
C15 |
N2 |
H23 |
242.2 |
240.0 |
| N2 |
C15 |
C16 |
H22 |
121.1 |
120.0 |
| N2 |
C15 |
C16 |
H23 |
238.9 |
240.0 |
| C15 |
C16 |
C17 |
BR1 |
156.0 |
180.0 |
| C15 |
C16 |
C17 |
H24 |
276.5 |
300.0 |
| C15 |
C16 |
C17 |
H25 |
35.6 |
59.9 |
| H22 |
C15 |
C16 |
H23 |
117.8 |
120.0 |
| O5 |
C16 |
C15 |
H22 |
249.0 |
240.2 |
| O5 |
C16 |
C15 |
H23 |
131.2 |
120.2 |
| O5 |
C16 |
C17 |
BR1 |
336.6 |
0.0 |
| O5 |
C16 |
C17 |
H24 |
97.0 |
120.0 |
| O5 |
C16 |
C17 |
H25 |
216.2 |
240.0 |
| C17 |
C16 |
C15 |
H22 |
69.6 |
60.2 |
| C17 |
C16 |
C15 |
H23 |
311.8 |
300.2 |
| BR1 |
C17 |
C16 |
H24 |
239.6 |
240.0 |
| BR1 |
C17 |
C16 |
H25 |
120.4 |
120.1 |
| H24 |
C17 |
C16 |
H25 |
240.9 |
240.1 |
| C16 |
C17 |
BR1 |
H24 |
120.4 |
120.0 |
| C16 |
C17 |
BR1 |
H25 |
239.6 |
239.9 |
| H24 |
C17 |
BR1 |
H25 |
119.1 |
119.9 |
| H1 |
C2 |
C1 |
O6 |
94.9 |
40.3 |
| N1 |
C2 |
H1 |
C3 |
121.6 |
119.9 |
| H1 |
C2 |
C3 |
C4 |
155.7 |
54.9 |
| H1 |
C2 |
C3 |
H5 |
277.1 |
175.0 |
| H1 |
C2 |
C3 |
H6 |
34.4 |
294.9 |
| H1 |
C2 |
N1 |
H2 |
298.5 |
56.1 |
| H1 |
C2 |
N1 |
H3 |
58.5 |
180.1 |
| H2 |
N1 |
C2 |
C3 |
57.7 |
176.0 |
| H2 |
N1 |
C2 |
H1 |
298.5 |
56.1 |
| C2 |
N1 |
H2 |
H3 |
120.0 |
123.9 |
| H3 |
N1 |
C2 |
C3 |
177.7 |
300.0 |
| H3 |
N1 |
C2 |
H1 |
58.5 |
180.1 |
| C2 |
N1 |
H3 |
H2 |
239.9 |
236.0 |
| C2 |
C3 |
H5 |
C4 |
231.7 |
240.0 |
| H5 |
C3 |
C2 |
H1 |
277.1 |
175.0 |
| C2 |
C3 |
H5 |
H6 |
115.9 |
119.9 |
| H5 |
C3 |
C4 |
N2 |
125.9 |
60.0 |
| C4 |
C3 |
H5 |
H6 |
244.2 |
240.0 |
| H5 |
C3 |
C4 |
H7 |
246.8 |
180.0 |
| H5 |
C3 |
C4 |
H8 |
5.0 |
300.0 |
| C2 |
C3 |
H6 |
C4 |
128.3 |
120.0 |
| H6 |
C3 |
C2 |
H1 |
34.4 |
294.9 |
| C2 |
C3 |
H6 |
H5 |
244.1 |
240.1 |
| H6 |
C3 |
C4 |
N2 |
8.5 |
300.0 |
| C4 |
C3 |
H6 |
H5 |
115.8 |
120.0 |
| H6 |
C3 |
C4 |
H7 |
129.4 |
60.0 |
| H6 |
C3 |
C4 |
H8 |
247.7 |
180.0 |
| C3 |
C4 |
H7 |
N2 |
234.5 |
240.0 |
| H7 |
C4 |
C3 |
H5 |
246.8 |
180.0 |
| H7 |
C4 |
C3 |
H6 |
129.4 |
60.0 |
| C3 |
C4 |
H7 |
H8 |
117.3 |
120.0 |
| H7 |
C4 |
N2 |
C15 |
42.6 |
306.1 |
| N2 |
C4 |
H7 |
H8 |
242.8 |
240.0 |
| C3 |
C4 |
H8 |
N2 |
125.5 |
120.0 |
| H8 |
C4 |
C3 |
H5 |
5.0 |
300.0 |
| H8 |
C4 |
C3 |
H6 |
247.7 |
180.0 |
| C3 |
C4 |
H8 |
H7 |
242.8 |
240.0 |
| H8 |
C4 |
N2 |
C15 |
284.4 |
186.1 |
| N2 |
C4 |
H8 |
H7 |
117.2 |
120.0 |
| C6 |
C5 |
H10 |
H11 |
117.6 |
240.0 |
| H10 |
C5 |
N2 |
C15 |
82.4 |
319.8 |
| C6 |
C5 |
H11 |
H10 |
242.4 |
120.0 |
| H11 |
C5 |
N2 |
C15 |
324.0 |
79.8 |
| H12 |
C6 |
C5 |
H10 |
88.7 |
178.4 |
| H12 |
C6 |
C5 |
H11 |
207.1 |
58.5 |
| C8 |
C7 |
H13 |
N3 |
235.4 |
237.2 |
| H13 |
C7 |
N3 |
C10 |
192.7 |
142.2 |
| H13 |
C7 |
C8 |
C9 |
278.0 |
278.3 |
| H13 |
C7 |
C8 |
H14 |
160.7 |
160.1 |
| O3 |
C8 |
H14 |
C9 |
237.7 |
236.4 |
| H14 |
C8 |
C7 |
N3 |
38.1 |
37.4 |
| C7 |
C8 |
H14 |
C9 |
113.0 |
112.7 |
| H14 |
C8 |
C7 |
H13 |
160.7 |
160.1 |
| H14 |
C8 |
C9 |
H16 |
327.9 |
338.7 |
| H15 |
O3 |
C8 |
C9 |
294.9 |
292.7 |
| H15 |
O3 |
C8 |
H14 |
57.1 |
56.3 |
| H16 |
C9 |
C8 |
H14 |
327.9 |
338.7 |
| H16 |
C9 |
C6 |
H12 |
252.9 |
236.1 |
| H17 |
O4 |
C9 |
H16 |
55.7 |
298.8 |
| C12 |
N5 |
H19 |
H20 |
120.0 |
180.0 |
| C12 |
N5 |
H20 |
H19 |
240.0 |
180.0 |
| N2 |
C15 |
H22 |
C16 |
233.1 |
240.1 |
| N2 |
C15 |
H22 |
H23 |
116.6 |
120.0 |
| H22 |
C15 |
C16 |
C17 |
69.6 |
60.2 |
| C16 |
C15 |
H22 |
H23 |
243.4 |
240.0 |
| N2 |
C15 |
H23 |
C16 |
126.9 |
120.0 |
| N2 |
C15 |
H23 |
H22 |
243.4 |
240.0 |
| H23 |
C15 |
C16 |
C17 |
311.8 |
300.2 |
| C16 |
C15 |
H23 |
H22 |
116.5 |
120.0 |
| C16 |
C17 |
H24 |
BR1 |
237.5 |
240.0 |
| C16 |
C17 |
H24 |
H25 |
118.7 |
120.0 |
| BR1 |
C17 |
H24 |
H25 |
241.3 |
240.0 |
| C16 |
C17 |
H25 |
BR1 |
122.5 |
120.0 |
| C16 |
C17 |
H25 |
H24 |
241.3 |
240.0 |
| BR1 |
C17 |
H25 |
H24 |
118.7 |
119.9 |