PDB Chemical Component 6CL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 6CL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.460 |
1.464 |
| N |
H2 |
1.000 |
0.996 |
| N |
H |
1.000 |
0.996 |
| CA |
CB |
1.527 |
1.534 |
| CA |
C |
1.527 |
1.515 |
| CA |
HA |
1.100 |
1.095 |
| CB |
CG |
1.518 |
1.534 |
| CB |
HB2 |
1.100 |
1.098 |
| CB |
HB3 |
1.100 |
1.096 |
| CG |
CD |
1.521 |
1.534 |
| CG |
HG2 |
1.100 |
1.097 |
| CG |
HG3 |
1.100 |
1.096 |
| CD |
CE |
1.522 |
1.531 |
| CD |
HD2 |
1.100 |
1.098 |
| CD |
HD3 |
1.101 |
1.098 |
| CE |
CZ |
1.516 |
1.514 |
| CE |
NZ |
1.492 |
1.497 |
| CE |
HE |
1.100 |
1.094 |
| CZ |
OH1 |
1.249 |
1.224 |
| CZ |
OH2 |
1.248 |
1.357 |
| OH2 |
HH2 |
0.950 |
0.981 |
| NZ |
HZ1 |
1.000 |
1.020 |
| NZ |
HZ2 |
1.000 |
1.021 |
| NZ |
HZ3 |
1.000 |
1.020 |
| C |
O |
1.231 |
1.223 |
| C |
OXT |
|
1.357 |
| OXT |
HXT |
|
0.981 |
Bond Angles for 6CL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H2 |
109.5 |
117.9 |
| CA |
N |
H |
109.5 |
117.9 |
| N |
CA |
CB |
109.5 |
109.6 |
| N |
CA |
C |
111.0 |
107.3 |
| N |
CA |
HA |
108.4 |
107.9 |
| H2 |
N |
H |
109.5 |
122.8 |
| CB |
CA |
C |
109.4 |
111.2 |
| CB |
CA |
HA |
110.1 |
111.0 |
| CA |
CB |
CG |
113.6 |
112.5 |
| CA |
CB |
HB2 |
107.2 |
109.3 |
| CA |
CB |
HB3 |
108.1 |
109.7 |
| C |
CA |
HA |
108.5 |
109.8 |
| CA |
C |
O |
120.7 |
125.8 |
| CA |
C |
OXT |
|
110.7 |
| CG |
CB |
HB2 |
107.2 |
108.5 |
| CG |
CB |
HB3 |
108.1 |
109.8 |
| CB |
CG |
CD |
111.6 |
113.2 |
| CB |
CG |
HG2 |
108.3 |
108.7 |
| CB |
CG |
HG3 |
108.8 |
110.5 |
| HB2 |
CB |
HB3 |
112.8 |
106.9 |
| CD |
CG |
HG2 |
108.3 |
107.9 |
| CD |
CG |
HG3 |
108.8 |
109.8 |
| CG |
CD |
CE |
111.5 |
114.9 |
| CG |
CD |
HD2 |
108.4 |
108.4 |
| CG |
CD |
HD3 |
108.8 |
107.8 |
| HG2 |
CG |
HG3 |
111.1 |
106.4 |
| CE |
CD |
HD2 |
108.4 |
109.8 |
| CE |
CD |
HD3 |
108.8 |
109.3 |
| CD |
CE |
CZ |
111.2 |
112.1 |
| CD |
CE |
NZ |
111.1 |
107.5 |
| CD |
CE |
HE |
107.6 |
113.0 |
| HD2 |
CD |
HD3 |
111.0 |
106.4 |
| CZ |
CE |
NZ |
110.7 |
108.6 |
| CZ |
CE |
HE |
108.0 |
110.6 |
| CE |
CZ |
OH1 |
118.4 |
124.6 |
| CE |
CZ |
OH2 |
118.4 |
112.5 |
| NZ |
CE |
HE |
108.1 |
104.6 |
| CE |
NZ |
HZ1 |
109.5 |
110.2 |
| CE |
NZ |
HZ2 |
109.5 |
110.2 |
| CE |
NZ |
HZ3 |
109.5 |
110.2 |
| OH1 |
CZ |
OH2 |
123.2 |
122.9 |
| CZ |
OH2 |
HH2 |
109.5 |
115.4 |
| HZ1 |
NZ |
HZ2 |
109.5 |
108.7 |
| HZ1 |
NZ |
HZ3 |
109.5 |
108.7 |
| HZ2 |
NZ |
HZ3 |
109.4 |
108.7 |
| O |
C |
OXT |
|
123.5 |
| C |
OXT |
HXT |
|
111.9 |
Torsion Angles for 6CL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H2 |
N |
CA |
H |
120.0 |
166.5 |
| CB |
CA |
N |
C |
239.1 |
239.1 |
| CB |
CA |
N |
HA |
120.1 |
120.9 |
| N |
CA |
CB |
CG |
213.9 |
299.0 |
| N |
CA |
CB |
HB2 |
95.8 |
178.4 |
| N |
CA |
CB |
HB3 |
333.9 |
61.5 |
| C |
CA |
N |
HA |
240.9 |
241.8 |
| N |
CA |
C |
O |
175.4 |
357.0 |
| N |
CA |
C |
OXT |
|
175.7 |
| CA |
N |
H2 |
H |
240.0 |
194.2 |
| H2 |
N |
CA |
CB |
125.6 |
111.3 |
| H2 |
N |
CA |
C |
246.5 |
232.2 |
| H2 |
N |
CA |
HA |
5.5 |
350.4 |
| CA |
N |
H |
H2 |
120.0 |
165.8 |
| H |
N |
CA |
CB |
5.6 |
304.8 |
| H |
N |
CA |
C |
126.4 |
65.7 |
| H |
N |
CA |
HA |
245.5 |
183.9 |
| CB |
CA |
N |
H2 |
125.6 |
111.3 |
| CB |
CA |
N |
H |
5.6 |
304.8 |
| N |
CA |
CB |
C |
121.8 |
118.4 |
| N |
CA |
CB |
HA |
240.9 |
241.0 |
| C |
CA |
CB |
HA |
119.1 |
122.6 |
| CB |
CA |
C |
O |
296.3 |
116.8 |
| CB |
CA |
C |
OXT |
|
295.5 |
| CG |
CB |
CA |
HB2 |
118.2 |
120.6 |
| CG |
CB |
CA |
HB3 |
240.0 |
237.5 |
| CA |
CB |
CG |
CD |
227.3 |
179.0 |
| CA |
CB |
CG |
HG2 |
108.2 |
298.9 |
| CA |
CB |
CG |
HG3 |
347.3 |
55.4 |
| HB2 |
CB |
CA |
HB3 |
121.8 |
116.9 |
| C |
CA |
N |
H2 |
246.5 |
232.2 |
| C |
CA |
N |
H |
126.4 |
65.7 |
| N |
CA |
C |
CB |
239.1 |
240.2 |
| N |
CA |
C |
HA |
119.0 |
117.0 |
| CB |
CA |
C |
HA |
239.9 |
236.8 |
| C |
CA |
CB |
CG |
92.1 |
180.6 |
| C |
CA |
CB |
HB2 |
333.9 |
60.0 |
| C |
CA |
CB |
HB3 |
212.1 |
303.1 |
| O |
C |
CA |
OXT |
|
181.4 |
| CA |
C |
OXT |
HXT |
|
181.2 |
| HA |
CA |
N |
H2 |
5.5 |
350.4 |
| HA |
CA |
N |
H |
245.5 |
183.9 |
| N |
CA |
HA |
CB |
119.7 |
120.0 |
| N |
CA |
HA |
C |
239.4 |
243.4 |
| CB |
CA |
HA |
C |
119.7 |
123.4 |
| HA |
CA |
CB |
CG |
333.0 |
58.0 |
| HA |
CA |
CB |
HB2 |
214.8 |
297.4 |
| HA |
CA |
CB |
HB3 |
93.0 |
180.5 |
| HA |
CA |
C |
O |
56.4 |
240.1 |
| HA |
CA |
C |
OXT |
|
58.7 |
| CG |
CB |
CA |
C |
92.1 |
180.6 |
| CG |
CB |
CA |
HA |
333.0 |
58.0 |
| CA |
CB |
CG |
HB2 |
241.8 |
239.0 |
| CA |
CB |
CG |
HB3 |
120.0 |
122.4 |
| HB2 |
CB |
CG |
HB3 |
238.2 |
243.5 |
| CD |
CG |
CB |
HG2 |
119.1 |
240.1 |
| CD |
CG |
CB |
HG3 |
240.0 |
123.6 |
| CB |
CG |
CD |
CE |
126.1 |
176.8 |
| CB |
CG |
CD |
HD2 |
6.9 |
300.0 |
| CB |
CG |
CD |
HD3 |
246.1 |
54.7 |
| HG2 |
CG |
CB |
HG3 |
120.9 |
243.6 |
| HB2 |
CB |
CA |
C |
333.9 |
60.0 |
| HB2 |
CB |
CA |
HA |
214.8 |
297.4 |
| CA |
CB |
HB2 |
CG |
122.3 |
123.0 |
| CA |
CB |
HB2 |
HB3 |
241.2 |
241.4 |
| CG |
CB |
HB2 |
HB3 |
118.9 |
118.4 |
| HB2 |
CB |
CG |
CD |
345.5 |
300.0 |
| HB2 |
CB |
CG |
HG2 |
226.4 |
59.9 |
| HB2 |
CB |
CG |
HG3 |
105.4 |
176.4 |
| HB3 |
CB |
CA |
C |
212.1 |
303.1 |
| HB3 |
CB |
CA |
HA |
93.0 |
180.5 |
| CA |
CB |
HB3 |
CG |
236.6 |
235.9 |
| CA |
CB |
HB3 |
HB2 |
118.3 |
118.4 |
| CG |
CB |
HB3 |
HB2 |
241.7 |
242.5 |
| HB3 |
CB |
CG |
CD |
107.3 |
56.5 |
| HB3 |
CB |
CG |
HG2 |
348.2 |
176.5 |
| HB3 |
CB |
CG |
HG3 |
227.3 |
292.9 |
| CD |
CG |
CB |
HB2 |
345.5 |
300.0 |
| CD |
CG |
CB |
HB3 |
107.3 |
56.5 |
| CB |
CG |
CD |
HG2 |
240.9 |
120.4 |
| CB |
CG |
CD |
HG3 |
120.0 |
236.0 |
| HG2 |
CG |
CD |
HG3 |
239.1 |
115.6 |
| CE |
CD |
CG |
HD2 |
119.2 |
236.8 |
| CE |
CD |
CG |
HD3 |
240.0 |
122.1 |
| CG |
CD |
CE |
CZ |
168.9 |
62.5 |
| CG |
CD |
CE |
NZ |
45.2 |
303.3 |
| CG |
CD |
CE |
HE |
287.0 |
188.4 |
| HD2 |
CD |
CG |
HD3 |
120.8 |
245.3 |
| HG2 |
CG |
CB |
HB2 |
226.4 |
59.9 |
| HG2 |
CG |
CB |
HB3 |
348.2 |
176.5 |
| CB |
CG |
HG2 |
CD |
121.1 |
236.8 |
| CB |
CG |
HG2 |
HG3 |
240.5 |
119.1 |
| CD |
CG |
HG2 |
HG3 |
119.4 |
242.2 |
| HG2 |
CG |
CD |
CE |
245.2 |
56.4 |
| HG2 |
CG |
CD |
HD2 |
126.0 |
179.6 |
| HG2 |
CG |
CD |
HD3 |
5.2 |
294.3 |
| HG3 |
CG |
CB |
HB2 |
105.4 |
176.4 |
| HG3 |
CG |
CB |
HB3 |
227.3 |
292.9 |
| CB |
CG |
HG3 |
CD |
238.3 |
125.6 |
| CB |
CG |
HG3 |
HG2 |
119.2 |
242.1 |
| CD |
CG |
HG3 |
HG2 |
240.9 |
116.5 |
| HG3 |
CG |
CD |
CE |
6.1 |
300.8 |
| HG3 |
CG |
CD |
HD2 |
246.9 |
64.0 |
| HG3 |
CG |
CD |
HD3 |
126.0 |
178.7 |
| CE |
CD |
CG |
HG2 |
245.2 |
56.4 |
| CE |
CD |
CG |
HG3 |
6.1 |
300.8 |
| CG |
CD |
CE |
HD2 |
240.8 |
122.5 |
| CG |
CD |
CE |
HD3 |
120.0 |
238.7 |
| HD2 |
CD |
CE |
HD3 |
239.1 |
116.3 |
| CZ |
CE |
CD |
NZ |
123.7 |
119.2 |
| CZ |
CE |
CD |
HE |
241.9 |
234.1 |
| CD |
CE |
CZ |
OH1 |
322.4 |
247.2 |
| CD |
CE |
CZ |
OH2 |
142.4 |
66.4 |
| NZ |
CE |
CD |
HE |
118.2 |
114.9 |
| CD |
CE |
NZ |
HZ1 |
294.0 |
217.5 |
| CD |
CE |
NZ |
HZ2 |
174.0 |
97.5 |
| CD |
CE |
NZ |
HZ3 |
54.0 |
337.5 |
| HD2 |
CD |
CG |
HG2 |
126.0 |
179.6 |
| HD2 |
CD |
CG |
HG3 |
246.9 |
64.0 |
| CG |
CD |
HD2 |
CE |
121.1 |
233.8 |
| CG |
CD |
HD2 |
HD3 |
240.6 |
115.6 |
| CE |
CD |
HD2 |
HD3 |
119.5 |
241.9 |
| HD2 |
CD |
CE |
CZ |
288.0 |
300.0 |
| HD2 |
CD |
CE |
NZ |
164.3 |
180.8 |
| HD2 |
CD |
CE |
HE |
46.2 |
65.9 |
| HD3 |
CD |
CG |
HG2 |
5.2 |
294.3 |
| HD3 |
CD |
CG |
HG3 |
126.0 |
178.7 |
| CG |
CD |
HD3 |
CE |
238.4 |
125.5 |
| CG |
CD |
HD3 |
HD2 |
119.2 |
243.9 |
| CE |
CD |
HD3 |
HD2 |
240.8 |
118.4 |
| HD3 |
CD |
CE |
CZ |
48.9 |
183.7 |
| HD3 |
CD |
CE |
NZ |
285.2 |
64.5 |
| HD3 |
CD |
CE |
HE |
167.0 |
309.7 |
| CZ |
CE |
CD |
HD2 |
288.0 |
300.0 |
| CZ |
CE |
CD |
HD3 |
48.9 |
183.7 |
| CD |
CE |
CZ |
NZ |
236.1 |
241.4 |
| CD |
CE |
CZ |
HE |
117.9 |
127.2 |
| NZ |
CE |
CZ |
HE |
241.8 |
245.8 |
| CZ |
CE |
NZ |
HZ1 |
170.0 |
96.0 |
| CZ |
CE |
NZ |
HZ2 |
50.0 |
336.0 |
| CZ |
CE |
NZ |
HZ3 |
290.0 |
216.0 |
| OH1 |
CZ |
CE |
OH2 |
180.0 |
180.7 |
| CE |
CZ |
OH2 |
HH2 |
180.0 |
180.8 |
| NZ |
CE |
CD |
HD2 |
164.3 |
180.8 |
| NZ |
CE |
CD |
HD3 |
285.2 |
64.5 |
| CD |
CE |
NZ |
CZ |
124.0 |
121.5 |
| CD |
CE |
NZ |
HE |
242.1 |
239.6 |
| CZ |
CE |
NZ |
HE |
118.1 |
118.1 |
| NZ |
CE |
CZ |
OH1 |
86.3 |
5.8 |
| NZ |
CE |
CZ |
OH2 |
266.3 |
185.0 |
| HZ1 |
NZ |
CE |
HZ2 |
120.0 |
120.0 |
| HZ1 |
NZ |
CE |
HZ3 |
240.0 |
240.0 |
| HZ2 |
NZ |
CE |
HZ3 |
120.0 |
120.0 |
| HE |
CE |
CD |
HD2 |
46.2 |
65.9 |
| HE |
CE |
CD |
HD3 |
167.0 |
309.7 |
| CD |
CE |
HE |
CZ |
239.9 |
233.3 |
| CD |
CE |
HE |
NZ |
120.0 |
116.6 |
| CZ |
CE |
HE |
NZ |
240.2 |
243.3 |
| HE |
CE |
CZ |
OH1 |
204.5 |
120.0 |
| HE |
CE |
CZ |
OH2 |
24.5 |
299.2 |
| HE |
CE |
NZ |
HZ1 |
51.9 |
337.8 |
| HE |
CE |
NZ |
HZ2 |
291.9 |
217.9 |
| HE |
CE |
NZ |
HZ3 |
171.9 |
97.9 |
| OH1 |
CZ |
CE |
NZ |
86.3 |
5.8 |
| OH1 |
CZ |
CE |
HE |
204.5 |
120.0 |
| CE |
CZ |
OH1 |
OH2 |
180.0 |
179.2 |
| OH1 |
CZ |
OH2 |
HH2 |
0.0 |
0.1 |
| OH2 |
CZ |
CE |
NZ |
266.3 |
185.0 |
| OH2 |
CZ |
CE |
HE |
24.5 |
299.2 |
| CE |
CZ |
OH2 |
OH1 |
180.0 |
180.7 |
| HZ1 |
NZ |
CE |
HE |
51.9 |
337.8 |
| CE |
NZ |
HZ1 |
HZ2 |
240.0 |
239.1 |
| CE |
NZ |
HZ1 |
HZ3 |
120.0 |
120.9 |
| HZ2 |
NZ |
HZ1 |
HZ3 |
240.0 |
241.8 |
| HZ2 |
NZ |
CE |
HE |
291.9 |
217.9 |
| CE |
NZ |
HZ2 |
HZ1 |
120.0 |
120.9 |
| CE |
NZ |
HZ2 |
HZ3 |
240.0 |
239.1 |
| HZ1 |
NZ |
HZ2 |
HZ3 |
120.0 |
118.2 |
| HZ3 |
NZ |
CE |
HE |
171.9 |
97.9 |
| CE |
NZ |
HZ3 |
HZ1 |
240.0 |
239.1 |
| CE |
NZ |
HZ3 |
HZ2 |
120.0 |
120.9 |
| HZ1 |
NZ |
HZ3 |
HZ2 |
240.0 |
241.8 |
| O |
C |
CA |
HA |
56.4 |
240.1 |
| CA |
C |
O |
OXT |
|
178.5 |
| O |
C |
OXT |
HXT |
|
359.9 |
| OXT |
C |
CA |
HA |
|
58.7 |
| CA |
C |
OXT |
O |
|
181.3 |