PDB Chemical Component 6CF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 6CF
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
N1 |
1.407 |
1.346 |
| C1' |
N1 |
1.483 |
1.465 |
| N1 |
C6 |
1.370 |
1.362 |
| O5' |
P1 |
1.598 |
1.610 |
| C3A |
P1 |
1.801 |
1.823 |
| P1 |
O2A |
1.487 |
1.481 |
| P1 |
O1A |
1.490 |
1.609 |
| O2 |
C2 |
1.243 |
1.220 |
| C2 |
N3 |
1.357 |
1.332 |
| O1B |
P2 |
1.484 |
1.480 |
| P2 |
O2B |
1.489 |
1.611 |
| P2 |
C3A |
1.784 |
1.823 |
| P2 |
O3B |
1.520 |
1.610 |
| N3 |
C4 |
1.335 |
1.326 |
| O3B |
P3 |
1.520 |
1.610 |
| P3 |
O3G |
1.485 |
1.480 |
| P3 |
O1G |
1.486 |
1.610 |
| P3 |
O2G |
1.489 |
1.609 |
| C4 |
N4 |
1.334 |
1.376 |
| C4 |
C5 |
1.424 |
1.410 |
| N4 |
HN4 |
1.000 |
0.970 |
| N4 |
HN4A |
1.000 |
0.970 |
| C6 |
C5 |
1.341 |
1.354 |
| C5 |
H5 |
1.080 |
1.080 |
| C6 |
H6 |
1.080 |
1.080 |
| C2' |
C1' |
1.534 |
1.545 |
| C1' |
O4' |
1.425 |
1.444 |
| C1' |
H1' |
1.100 |
1.089 |
| F1A |
C3A |
1.328 |
1.399 |
| O1A |
HO1A |
0.950 |
0.967 |
| O1G |
HO1G |
0.950 |
0.967 |
| C2' |
C3' |
1.523 |
1.545 |
| C2' |
H2' |
1.100 |
1.089 |
| C2' |
H2'A |
1.100 |
1.090 |
| C3A |
F2A |
1.338 |
1.398 |
| O2B |
HO2B |
0.950 |
0.967 |
| O2G |
HO2G |
0.950 |
0.967 |
| O3' |
C3' |
1.424 |
1.429 |
| C3' |
C4' |
1.516 |
1.545 |
| C3' |
H3' |
1.100 |
1.090 |
| O3' |
HO3' |
0.950 |
0.966 |
| O4' |
C4' |
1.450 |
1.444 |
| C4' |
C5' |
1.513 |
1.530 |
| C4' |
H4' |
1.100 |
1.089 |
| C5' |
O5' |
1.426 |
1.430 |
| C5' |
H5' |
1.100 |
1.090 |
| C5' |
H5'A |
1.100 |
1.090 |
Bond Angles for 6CF
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
120.0 |
120.3 |
| N1 |
C6 |
C5 |
121.2 |
119.3 |
| N1 |
C6 |
H6 |
119.4 |
120.3 |
| O1A |
P1 |
O2A |
118.2 |
109.5 |
| P1 |
O1A |
HO1A |
109.5 |
114.0 |
| O2 |
C2 |
N3 |
121.6 |
119.4 |
| C2 |
N3 |
C4 |
120.0 |
120.7 |
| O1B |
P2 |
O2B |
118.9 |
109.5 |
| O1B |
P2 |
C3A |
109.4 |
109.5 |
| O1B |
P2 |
O3B |
103.8 |
109.4 |
| O2B |
P2 |
C3A |
110.8 |
109.5 |
| O2B |
P2 |
O3B |
107.3 |
109.5 |
| P2 |
O2B |
HO2B |
109.5 |
114.0 |
| C3A |
P2 |
O3B |
105.5 |
109.5 |
| P2 |
C3A |
F1A |
107.7 |
109.4 |
| P2 |
C3A |
F2A |
106.3 |
109.5 |
| P2 |
O3B |
P3 |
124.9 |
134.0 |
| N3 |
C4 |
N4 |
117.9 |
120.2 |
| N3 |
C4 |
C5 |
122.0 |
119.7 |
| O3B |
P3 |
O3G |
108.4 |
109.4 |
| O1G |
P3 |
O3G |
106.2 |
109.5 |
| O2G |
P3 |
O3G |
106.1 |
109.5 |
| O1G |
P3 |
O2G |
119.0 |
109.5 |
| P3 |
O1G |
HO1G |
109.5 |
114.0 |
| P3 |
O2G |
HO2G |
109.5 |
114.0 |
| N4 |
C4 |
C5 |
120.1 |
120.1 |
| C4 |
N4 |
HN4 |
120.0 |
119.9 |
| C4 |
N4 |
HN4A |
120.0 |
120.0 |
| C4 |
C5 |
H5 |
121.2 |
120.5 |
| HN4 |
N4 |
HN4A |
120.0 |
120.1 |
| C6 |
C5 |
H5 |
121.2 |
120.5 |
| C2' |
C1' |
O4' |
106.5 |
104.8 |
| C2' |
C1' |
H1' |
109.7 |
110.4 |
| O4' |
C1' |
H1' |
112.4 |
110.4 |
| C1' |
O4' |
C4' |
109.4 |
105.3 |
| F1A |
C3A |
F2A |
108.2 |
109.5 |
| C3' |
C2' |
H2' |
112.4 |
110.6 |
| C3' |
C2' |
H2'A |
112.4 |
110.5 |
| C2' |
C3' |
C4' |
101.1 |
104.1 |
| C2' |
C3' |
H3' |
113.0 |
110.6 |
| H2' |
C2' |
H2'A |
106.4 |
110.6 |
| O3' |
C3' |
C4' |
109.7 |
110.5 |
| O3' |
C3' |
H3' |
104.9 |
110.6 |
| C4' |
C3' |
H3' |
115.7 |
110.5 |
| C3' |
C4' |
C5' |
115.0 |
110.3 |
| C3' |
C4' |
H4' |
110.7 |
110.4 |
| O4' |
C4' |
C5' |
112.0 |
110.4 |
| O4' |
C4' |
H4' |
113.8 |
110.5 |
| C5' |
C4' |
H4' |
102.0 |
110.3 |
| C4' |
C5' |
O5' |
111.3 |
109.5 |
| C4' |
C5' |
H5' |
108.9 |
109.5 |
| C4' |
C5' |
H5'A |
108.8 |
109.5 |
| O5' |
C5' |
H5' |
108.8 |
109.5 |
| O5' |
C5' |
H5'A |
108.9 |
109.4 |
| H5' |
C5' |
H5'A |
110.1 |
109.4 |
Torsion Angles for 6CF
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
C5 |
358.2 |
0.0 |
| C2 |
N1 |
C6 |
H6 |
178.2 |
180.0 |
| C1' |
N1 |
C6 |
H6 |
356.9 |
0.2 |
| N1 |
C6 |
C5 |
H5 |
180.4 |
180.0 |
| O5' |
P1 |
O1A |
HO1A |
244.9 |
60.0 |
| C3A |
P1 |
O1A |
HO1A |
126.9 |
300.0 |
| O2A |
P1 |
O1A |
HO1A |
0.0 |
180.0 |
| O2 |
C2 |
N1 |
C6 |
182.0 |
180.0 |
| O2 |
C2 |
N3 |
C4 |
179.4 |
180.0 |
| N3 |
C2 |
N1 |
C6 |
1.7 |
0.0 |
| C2 |
N3 |
C4 |
N4 |
178.7 |
180.0 |
| C2 |
N3 |
C4 |
C5 |
359.0 |
0.0 |
| O2B |
P2 |
O1B |
C3A |
128.7 |
120.0 |
| O2B |
P2 |
O1B |
O3B |
240.9 |
240.0 |
| O1B |
P2 |
O2B |
HO2B |
360.0 |
179.9 |
| C3A |
P2 |
O1B |
O3B |
112.2 |
120.1 |
| O1B |
P2 |
C3A |
F1A |
359.4 |
300.0 |
| O1B |
P2 |
C3A |
F2A |
243.6 |
180.0 |
| O1B |
P2 |
O3B |
P3 |
189.2 |
300.0 |
| O1B |
P2 |
O2B |
C3A |
232.0 |
240.0 |
| O1B |
P2 |
O2B |
O3B |
117.2 |
119.9 |
| C3A |
P2 |
O2B |
O3B |
245.3 |
240.0 |
| O2B |
P2 |
C3A |
F1A |
226.4 |
180.0 |
| O2B |
P2 |
C3A |
F2A |
110.5 |
60.0 |
| O2B |
P2 |
O3B |
P3 |
315.9 |
60.0 |
| O1B |
P2 |
C3A |
O2B |
133.0 |
120.0 |
| O1B |
P2 |
C3A |
O3B |
248.9 |
240.0 |
| O2B |
P2 |
C3A |
O3B |
115.9 |
120.0 |
| C3A |
P2 |
O2B |
HO2B |
128.0 |
299.9 |
| C3A |
P2 |
O3B |
P3 |
74.2 |
180.0 |
| F1A |
C3A |
P2 |
F2A |
115.8 |
120.0 |
| O1B |
P2 |
O3B |
O2B |
233.3 |
240.0 |
| O1B |
P2 |
O3B |
C3A |
115.1 |
120.1 |
| O2B |
P2 |
O3B |
C3A |
241.8 |
240.0 |
| O3B |
P2 |
O2B |
HO2B |
242.7 |
60.0 |
| O3B |
P2 |
C3A |
F1A |
110.5 |
60.0 |
| O3B |
P2 |
C3A |
F2A |
354.7 |
300.0 |
| P2 |
O3B |
P3 |
O3G |
108.5 |
45.0 |
| N4 |
C4 |
N3 |
C5 |
179.7 |
180.0 |
| N3 |
C4 |
N4 |
HN4 |
360.0 |
0.0 |
| N3 |
C4 |
N4 |
HN4A |
180.0 |
180.0 |
| N3 |
C4 |
C5 |
H5 |
181.0 |
179.9 |
| O1G |
P3 |
O3B |
O3G |
245.9 |
120.0 |
| O2G |
P3 |
O3B |
O3G |
115.4 |
240.0 |
| O3B |
P3 |
O1G |
HO1G |
115.6 |
180.0 |
| O3B |
P3 |
O2G |
HO2G |
243.1 |
299.9 |
| O1G |
P3 |
O3G |
O2G |
232.5 |
120.0 |
| O3G |
P3 |
O1G |
HO1G |
360.0 |
300.0 |
| O3G |
P3 |
O2G |
HO2G |
0.0 |
180.0 |
| P2 |
O3B |
P3 |
O1G |
354.4 |
165.0 |
| O3B |
P3 |
O1G |
O3G |
115.6 |
240.0 |
| O2G |
P3 |
O1G |
O3G |
240.6 |
120.0 |
| O1G |
P3 |
O2G |
HO2G |
119.4 |
60.0 |
| P2 |
O3B |
P3 |
O2G |
224.0 |
285.0 |
| O3B |
P3 |
O2G |
O3G |
243.1 |
119.9 |
| O1G |
P3 |
O2G |
O3G |
119.4 |
240.0 |
| O2G |
P3 |
O1G |
HO1G |
240.6 |
60.0 |
| N3 |
C4 |
N4 |
C5 |
180.3 |
180.0 |
| N4 |
C4 |
C5 |
H5 |
1.3 |
359.9 |
| HN4 |
N4 |
C4 |
HN4A |
180.0 |
180.0 |
| N1 |
C6 |
C5 |
C4 |
0.4 |
360.0 |
| N3 |
C4 |
C5 |
N4 |
179.7 |
180.0 |
| C5 |
C4 |
N4 |
HN4 |
179.7 |
180.0 |
| C5 |
C4 |
N4 |
HN4A |
359.7 |
360.0 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
| HN4 |
N4 |
C4 |
C5 |
179.7 |
180.0 |
| C4 |
N4 |
HN4 |
HN4A |
180.0 |
180.0 |
| HN4A |
N4 |
C4 |
C5 |
359.7 |
360.0 |
| C4 |
N4 |
HN4A |
HN4 |
180.0 |
180.0 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
179.9 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
| N1 |
C6 |
H6 |
C5 |
180.0 |
180.1 |
| H6 |
C6 |
C5 |
H5 |
0.4 |
0.1 |
| O4' |
C1' |
C2' |
H1' |
121.9 |
118.9 |
| C2' |
C1' |
O4' |
C4' |
2.0 |
319.4 |
| C2' |
C1' |
O4' |
H1' |
239.8 |
241.1 |
| C1' |
O4' |
C4' |
C5' |
148.7 |
159.4 |
| C1' |
O4' |
C4' |
H4' |
263.8 |
281.7 |
| C2' |
C1' |
H1' |
O4' |
118.3 |
115.5 |
| H1' |
C1' |
O4' |
C4' |
122.2 |
78.4 |
| F1A |
C3A |
P2 |
O3B |
110.5 |
60.0 |
| P2 |
C3A |
F1A |
F2A |
245.4 |
240.0 |
| HO1A |
O1A |
P1 |
O2A |
0.0 |
180.0 |
| HO1G |
O1G |
P3 |
O3G |
360.0 |
300.0 |
| HO1G |
O1G |
P3 |
O2G |
240.6 |
60.0 |
| C3' |
C2' |
C1' |
O4' |
333.1 |
24.0 |
| C3' |
C2' |
C1' |
H1' |
211.1 |
265.1 |
| H2' |
C2' |
C3' |
H2'A |
120.0 |
122.7 |
| O3' |
C3' |
C2' |
C4' |
117.0 |
118.6 |
| O3' |
C3' |
C2' |
H3' |
241.4 |
237.3 |
| C4' |
C3' |
C2' |
H3' |
124.3 |
118.7 |
| C2' |
C3' |
C4' |
C5' |
197.1 |
217.2 |
| C2' |
C3' |
C4' |
H4' |
82.2 |
95.0 |
| H2' |
C2' |
C1' |
O4' |
93.0 |
142.7 |
| H2' |
C2' |
C1' |
H1' |
331.1 |
23.7 |
| C3' |
C2' |
H2' |
H2'A |
236.6 |
237.3 |
| H2' |
C2' |
C3' |
C4' |
280.3 |
241.4 |
| H2' |
C2' |
C3' |
H3' |
156.0 |
122.7 |
| H2'A |
C2' |
C1' |
O4' |
213.1 |
265.4 |
| H2'A |
C2' |
C1' |
H1' |
91.2 |
146.4 |
| C3' |
C2' |
H2'A |
H2' |
123.4 |
122.7 |
| H2'A |
C2' |
C3' |
C4' |
160.3 |
118.7 |
| H2'A |
C2' |
C3' |
H3' |
36.0 |
360.0 |
| F2A |
C3A |
P2 |
O3B |
354.7 |
300.0 |
| P2 |
C3A |
F2A |
F1A |
115.5 |
120.0 |
| HO2B |
O2B |
P2 |
C3A |
128.0 |
299.9 |
| HO2B |
O2B |
P2 |
O3B |
242.7 |
60.0 |
| HO2G |
O2G |
P3 |
O3G |
0.0 |
180.0 |
| O3' |
C3' |
C2' |
H2' |
37.4 |
360.0 |
| O3' |
C3' |
C2' |
H2'A |
277.3 |
237.3 |
| C2' |
C3' |
O3' |
C4' |
248.2 |
245.4 |
| C2' |
C3' |
O3' |
H3' |
123.3 |
122.7 |
| C4' |
C3' |
O3' |
H3' |
235.1 |
237.3 |
| O3' |
C3' |
C4' |
C5' |
78.0 |
98.6 |
| O3' |
C3' |
C4' |
H4' |
323.0 |
336.4 |
| C1' |
O4' |
C4' |
C3' |
24.1 |
40.6 |
| C4' |
C3' |
C2' |
H2' |
280.3 |
241.4 |
| C4' |
C3' |
C2' |
H2'A |
160.3 |
118.7 |
| C2' |
C3' |
C4' |
H3' |
237.6 |
241.3 |
| O3' |
C3' |
C4' |
H3' |
118.4 |
122.7 |
| O4' |
C4' |
C3' |
C5' |
122.6 |
118.8 |
| O4' |
C4' |
C3' |
H4' |
237.6 |
241.0 |
| C5' |
C4' |
C3' |
H4' |
115.0 |
122.2 |
| C3' |
C4' |
C5' |
O5' |
76.4 |
185.0 |
| C3' |
C4' |
C5' |
H5' |
196.4 |
305.0 |
| C3' |
C4' |
C5' |
H5'A |
316.4 |
65.0 |
| H3' |
C3' |
C2' |
H2' |
156.0 |
122.7 |
| H3' |
C3' |
C2' |
H2'A |
36.0 |
360.0 |
| C2' |
C3' |
H3' |
C4' |
115.9 |
114.7 |
| O3' |
C3' |
H3' |
C4' |
238.9 |
237.3 |
| H3' |
C3' |
C4' |
C5' |
319.6 |
335.9 |
| H3' |
C3' |
C4' |
H4' |
204.6 |
213.7 |
| HO3' |
O3' |
C3' |
C4' |
259.4 |
176.1 |
| HO3' |
O3' |
C3' |
H3' |
24.3 |
298.8 |
| C4' |
O4' |
C1' |
H1' |
122.2 |
78.4 |
| O4' |
C4' |
C3' |
H3' |
82.2 |
94.7 |
| C3' |
C4' |
O4' |
C5' |
235.4 |
241.2 |
| C3' |
C4' |
O4' |
H4' |
120.3 |
118.9 |
| C5' |
C4' |
O4' |
H4' |
244.9 |
237.7 |
| O4' |
C4' |
C5' |
O5' |
318.4 |
69.6 |
| O4' |
C4' |
C5' |
H5' |
78.4 |
189.6 |
| O4' |
C4' |
C5' |
H5'A |
198.4 |
309.7 |
| C5' |
C4' |
C3' |
H3' |
319.6 |
335.9 |
| C3' |
C4' |
C5' |
H4' |
240.1 |
237.7 |
| O4' |
C4' |
C5' |
H4' |
122.1 |
122.4 |
| O5' |
C5' |
C4' |
H5' |
240.0 |
240.0 |
| O5' |
C5' |
C4' |
H5'A |
120.0 |
120.0 |
| H5' |
C5' |
C4' |
H5'A |
240.0 |
240.0 |
| H4' |
C4' |
C3' |
H3' |
204.6 |
213.7 |
| C3' |
C4' |
H4' |
C5' |
122.9 |
122.2 |
| O4' |
C4' |
H4' |
C5' |
239.1 |
237.7 |
| H4' |
C4' |
C5' |
O5' |
196.3 |
307.2 |
| H4' |
C4' |
C5' |
H5' |
316.3 |
67.2 |
| H4' |
C4' |
C5' |
H5'A |
76.3 |
187.3 |
| O5' |
C5' |
C4' |
H4' |
196.3 |
307.2 |
| C4' |
C5' |
O5' |
H5' |
120.0 |
120.1 |
| C4' |
C5' |
O5' |
H5'A |
240.0 |
240.0 |
| H5' |
C5' |
O5' |
H5'A |
120.0 |
119.9 |
| H5' |
C5' |
C4' |
H4' |
316.3 |
67.2 |
| C4' |
C5' |
H5' |
O5' |
238.5 |
240.0 |
| C4' |
C5' |
H5' |
H5'A |
119.2 |
120.0 |
| O5' |
C5' |
H5' |
H5'A |
240.7 |
240.1 |
| H5'A |
C5' |
C4' |
H4' |
76.3 |
187.3 |
| C4' |
C5' |
H5'A |
O5' |
121.5 |
120.0 |
| C4' |
C5' |
H5'A |
H5' |
240.8 |
239.9 |
| O5' |
C5' |
H5'A |
H5' |
119.3 |
119.9 |