Atom Nomenclature for 6CF

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 6CF

Atom Name (V3) Atom Name (V2)
N1 N1
P1 P1
C2 C2
O2 O2
P2 P2
N3 N3
P3 P3
C4 C4
N4 N4
C5 C5
C6 C6
C1' C1'
F1A F1A
O1A O1A
O1B O1B
O1G O1G
C2' C2'
F2A F2A
O2A O2A
O2B O2B
O2G O2G
C3' C3'
O3' O3'
C3A C3A
O3B O3B
O3G O3G
C4' C4'
O4' O4'
C5' C5'
O5' O5'
HN4 HN4
HN4A HN4A
H5 H5
H6 H6
H1' H1'
HO1A HO1A
HO1G HO1G
H2' H2'
H2'A H2'A
HO2B HO2B
HO2G HO2G
H3' H3'
HO3' HO3'
H4' H4'
H5' H5'
H5'A H5'A