PDB Chemical Component 6CD
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 6CD
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C25 |
C22 |
1.520 |
1.530 |
| C22 |
N21 |
1.446 |
1.465 |
| C22 |
C24 |
1.516 |
1.530 |
| C22 |
C23 |
1.533 |
1.530 |
| N21 |
C20 |
1.462 |
1.373 |
| C19 |
N18 |
1.480 |
1.465 |
| C20 |
N18 |
1.346 |
1.365 |
| C20 |
N26 |
1.397 |
1.310 |
| N18 |
C16 |
1.399 |
1.353 |
| C01 |
C02 |
1.530 |
1.530 |
| N26 |
C27 |
1.421 |
1.346 |
| C16 |
O17 |
1.216 |
1.218 |
| C16 |
C15 |
1.460 |
1.470 |
| C02 |
C10 |
1.507 |
1.509 |
| C02 |
N03 |
1.434 |
1.468 |
| N09 |
C10 |
1.376 |
1.346 |
| N09 |
C08 |
1.366 |
1.374 |
| C10 |
C06 |
1.383 |
1.380 |
| C27 |
C15 |
1.372 |
1.412 |
| C27 |
C11 |
1.485 |
1.410 |
| C15 |
C14 |
1.465 |
1.395 |
| N03 |
C04 |
1.431 |
1.345 |
| C08 |
C11 |
1.409 |
1.477 |
| C08 |
C07 |
1.413 |
1.358 |
| C11 |
C12 |
1.402 |
1.390 |
| C06 |
C04 |
1.503 |
1.469 |
| C06 |
C07 |
1.418 |
1.420 |
| C14 |
C13 |
1.408 |
1.378 |
| C04 |
O05 |
1.239 |
1.216 |
| C12 |
C13 |
1.401 |
1.386 |
| C01 |
H1 |
1.100 |
1.090 |
| C01 |
H2 |
1.100 |
1.090 |
| C01 |
H3 |
1.100 |
1.089 |
| C02 |
H4 |
1.100 |
1.090 |
| N03 |
H5 |
1.000 |
0.970 |
| C07 |
H6 |
1.080 |
1.080 |
| N09 |
H7 |
1.000 |
0.970 |
| C12 |
H8 |
1.080 |
1.079 |
| C13 |
H9 |
1.080 |
1.080 |
| C14 |
H10 |
1.080 |
1.081 |
| C19 |
H11 |
1.100 |
1.090 |
| C19 |
H12 |
1.100 |
1.090 |
| C19 |
H13 |
1.100 |
1.089 |
| N21 |
H14 |
1.000 |
0.970 |
| C23 |
H15 |
1.100 |
1.090 |
| C23 |
H16 |
1.101 |
1.089 |
| C23 |
H17 |
1.100 |
1.091 |
| C24 |
H18 |
1.100 |
1.090 |
| C24 |
H19 |
1.100 |
1.090 |
| C24 |
H20 |
1.100 |
1.090 |
| C25 |
H21 |
1.100 |
1.090 |
| C25 |
H22 |
1.100 |
1.090 |
| C25 |
H23 |
1.100 |
1.090 |
Bond Angles for 6CD
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C22 |
N21 |
H14 |
117.0 |
120.0 |
| C23 |
C22 |
C24 |
112.1 |
109.4 |
| C22 |
C24 |
H18 |
109.5 |
109.5 |
| C22 |
C24 |
H19 |
109.5 |
109.4 |
| C22 |
C24 |
H20 |
109.5 |
109.5 |
| C22 |
C23 |
H15 |
109.5 |
109.5 |
| C22 |
C23 |
H16 |
109.4 |
109.5 |
| C22 |
C23 |
H17 |
109.5 |
109.5 |
| N21 |
C20 |
N26 |
119.7 |
118.5 |
| C20 |
N26 |
C27 |
122.4 |
121.6 |
| C01 |
C02 |
C10 |
114.1 |
110.1 |
| C01 |
C02 |
N03 |
110.9 |
110.1 |
| C02 |
C01 |
H1 |
109.5 |
109.5 |
| C02 |
C01 |
H2 |
109.5 |
109.4 |
| C02 |
C01 |
H3 |
109.4 |
109.5 |
| C01 |
C02 |
H4 |
107.6 |
110.1 |
| N03 |
C02 |
C10 |
107.2 |
106.1 |
| C02 |
C10 |
N09 |
143.6 |
145.1 |
| C02 |
C10 |
C06 |
108.6 |
106.5 |
| C10 |
C02 |
H4 |
107.9 |
110.1 |
| C02 |
N03 |
C04 |
108.4 |
108.3 |
| N03 |
C02 |
H4 |
108.9 |
110.2 |
| C02 |
N03 |
H5 |
125.8 |
125.8 |
| C10 |
N09 |
H7 |
124.7 |
125.4 |
| N09 |
C08 |
C11 |
131.1 |
125.7 |
| C15 |
C14 |
H10 |
119.2 |
120.0 |
| N03 |
C04 |
O05 |
125.6 |
124.9 |
| C04 |
N03 |
H5 |
125.8 |
125.9 |
| C08 |
C11 |
C12 |
127.0 |
120.3 |
| C08 |
C07 |
H6 |
126.3 |
126.5 |
| C11 |
C12 |
C13 |
117.9 |
120.6 |
| C11 |
C12 |
H8 |
121.0 |
119.7 |
| C06 |
C07 |
H6 |
126.3 |
126.4 |
| C14 |
C13 |
H9 |
120.0 |
119.6 |
| C13 |
C12 |
H8 |
121.0 |
119.7 |
| C12 |
C13 |
H9 |
120.0 |
119.6 |
| H1 |
C01 |
H2 |
109.4 |
109.4 |
| H1 |
C01 |
H3 |
109.5 |
109.5 |
| H2 |
C01 |
H3 |
109.5 |
109.5 |
| H11 |
C19 |
H12 |
109.4 |
109.5 |
| H11 |
C19 |
H13 |
109.5 |
109.5 |
| H12 |
C19 |
H13 |
109.5 |
109.5 |
| H15 |
C23 |
H16 |
109.5 |
109.5 |
| H15 |
C23 |
H17 |
109.5 |
109.4 |
| H16 |
C23 |
H17 |
109.5 |
109.5 |
| H18 |
C24 |
H19 |
109.5 |
109.4 |
| H18 |
C24 |
H20 |
109.5 |
109.5 |
| H19 |
C24 |
H20 |
109.4 |
109.5 |
| H21 |
C25 |
H22 |
109.5 |
109.5 |
| H21 |
C25 |
H23 |
109.4 |
109.5 |
| H22 |
C25 |
H23 |
109.5 |
109.4 |
Torsion Angles for 6CD
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C25 |
C22 |
N21 |
H14 |
4.6 |
3.0 |
| C25 |
C22 |
C24 |
H18 |
180.0 |
296.7 |
| C25 |
C22 |
C24 |
H19 |
300.0 |
56.6 |
| C25 |
C22 |
C24 |
H20 |
60.0 |
176.7 |
| C25 |
C22 |
C23 |
H15 |
180.0 |
180.0 |
| C25 |
C22 |
C23 |
H16 |
300.0 |
300.0 |
| C25 |
C22 |
C23 |
H17 |
60.0 |
60.1 |
| C22 |
N21 |
C20 |
N26 |
353.0 |
5.2 |
| C24 |
C22 |
N21 |
H14 |
122.6 |
242.9 |
| C24 |
C22 |
C23 |
H15 |
60.3 |
300.0 |
| C24 |
C22 |
C23 |
H16 |
180.3 |
60.0 |
| C24 |
C22 |
C23 |
H17 |
300.3 |
180.1 |
| H18 |
C24 |
C22 |
H19 |
240.0 |
240.1 |
| H18 |
C24 |
C22 |
H20 |
120.0 |
120.0 |
| H19 |
C24 |
C22 |
H20 |
240.1 |
239.9 |
| C23 |
C22 |
N21 |
H14 |
247.0 |
123.0 |
| C23 |
C22 |
C24 |
H18 |
299.9 |
176.7 |
| C23 |
C22 |
C24 |
H19 |
60.0 |
296.6 |
| C23 |
C22 |
C24 |
H20 |
179.9 |
56.7 |
| H15 |
C23 |
C22 |
H16 |
240.0 |
240.0 |
| H15 |
C23 |
C22 |
H17 |
120.0 |
119.9 |
| H16 |
C23 |
C22 |
H17 |
240.0 |
239.9 |
| N21 |
C20 |
N26 |
C27 |
180.6 |
179.8 |
| N03 |
C02 |
C01 |
C10 |
238.7 |
243.3 |
| C01 |
C02 |
C10 |
N09 |
56.2 |
60.9 |
| C01 |
C02 |
C10 |
C06 |
236.8 |
240.8 |
| C10 |
C02 |
C01 |
H4 |
240.3 |
238.4 |
| C01 |
C02 |
N03 |
C04 |
125.3 |
119.2 |
| N03 |
C02 |
C01 |
H4 |
119.0 |
121.7 |
| C01 |
C02 |
N03 |
H5 |
305.3 |
299.1 |
| H1 |
C01 |
C02 |
H2 |
240.0 |
240.1 |
| H1 |
C01 |
C02 |
H3 |
120.0 |
120.0 |
| H2 |
C01 |
C02 |
H3 |
240.0 |
239.9 |
| C16 |
C15 |
C14 |
H10 |
0.3 |
0.0 |
| C01 |
C02 |
C10 |
N03 |
236.7 |
240.8 |
| C10 |
C02 |
C01 |
H1 |
180.0 |
60.0 |
| C10 |
C02 |
C01 |
H2 |
300.0 |
180.0 |
| C10 |
C02 |
C01 |
H3 |
60.0 |
300.0 |
| C01 |
C02 |
C10 |
H4 |
119.5 |
121.6 |
| C10 |
C02 |
N03 |
C04 |
0.0 |
0.0 |
| N03 |
C02 |
C10 |
H4 |
242.8 |
240.8 |
| C10 |
C02 |
N03 |
H5 |
180.0 |
180.0 |
| C02 |
C10 |
N09 |
H7 |
360.0 |
360.0 |
| C01 |
C02 |
N03 |
C10 |
125.3 |
119.1 |
| N03 |
C02 |
C01 |
H1 |
58.7 |
303.3 |
| N03 |
C02 |
C01 |
H2 |
178.7 |
63.2 |
| N03 |
C02 |
C01 |
H3 |
298.7 |
183.3 |
| C01 |
C02 |
N03 |
H4 |
241.8 |
238.4 |
| N03 |
C02 |
C10 |
N09 |
179.5 |
180.0 |
| N03 |
C02 |
C10 |
C06 |
0.1 |
0.0 |
| C10 |
C02 |
N03 |
H4 |
116.5 |
119.2 |
| C02 |
N03 |
C04 |
O05 |
179.3 |
180.1 |
| C04 |
N03 |
C02 |
H5 |
180.0 |
180.0 |
| C02 |
C10 |
N09 |
C06 |
180.6 |
180.0 |
| N09 |
C10 |
C02 |
H4 |
296.6 |
299.3 |
| C10 |
N09 |
C08 |
C11 |
178.7 |
180.0 |
| C02 |
C10 |
N09 |
C08 |
179.9 |
180.0 |
| N09 |
C08 |
C11 |
C12 |
183.3 |
312.8 |
| N09 |
C08 |
C07 |
H6 |
179.5 |
180.0 |
| C02 |
C10 |
C06 |
N09 |
179.6 |
180.0 |
| C06 |
C10 |
C02 |
H4 |
117.2 |
119.3 |
| C10 |
C06 |
C07 |
H6 |
180.1 |
180.0 |
| C27 |
C15 |
C14 |
H10 |
180.1 |
179.8 |
| C27 |
C11 |
C12 |
H8 |
181.2 |
180.2 |
| C15 |
C14 |
C13 |
H9 |
179.9 |
180.1 |
| C04 |
N03 |
C02 |
C10 |
0.0 |
0.0 |
| C04 |
N03 |
C02 |
H4 |
243.5 |
240.8 |
| C02 |
N03 |
C04 |
H5 |
180.0 |
180.0 |
| C11 |
C08 |
C07 |
H6 |
1.3 |
360.0 |
| C08 |
C11 |
C12 |
C13 |
178.4 |
180.1 |
| C08 |
C11 |
C12 |
H8 |
358.4 |
360.0 |
| C06 |
C07 |
C08 |
H6 |
180.0 |
180.0 |
| C13 |
C12 |
C11 |
H8 |
180.0 |
180.1 |
| C11 |
C12 |
C13 |
H9 |
179.5 |
179.9 |
| C02 |
C10 |
C06 |
C04 |
359.9 |
360.0 |
| C06 |
C04 |
N03 |
H5 |
179.9 |
180.0 |
| C02 |
C10 |
C06 |
C07 |
179.9 |
180.0 |
| C08 |
C07 |
C06 |
H6 |
180.0 |
180.0 |
| C14 |
C13 |
C12 |
H8 |
179.5 |
180.1 |
| C12 |
C13 |
C14 |
H9 |
180.0 |
179.9 |
| O05 |
C04 |
N03 |
H5 |
359.4 |
0.1 |
| C11 |
C12 |
C13 |
H8 |
180.0 |
179.9 |
| C14 |
C13 |
C12 |
H9 |
180.0 |
180.1 |
| H1 |
C01 |
C02 |
C10 |
180.0 |
60.0 |
| H1 |
C01 |
C02 |
N03 |
58.7 |
303.3 |
| C02 |
C01 |
H1 |
H2 |
120.0 |
119.9 |
| C02 |
C01 |
H1 |
H3 |
240.0 |
240.0 |
| H1 |
C01 |
C02 |
H4 |
299.7 |
181.6 |
| H2 |
C01 |
H1 |
H3 |
120.0 |
120.0 |
| H2 |
C01 |
C02 |
C10 |
300.0 |
180.0 |
| H2 |
C01 |
C02 |
N03 |
178.7 |
63.2 |
| C02 |
C01 |
H2 |
H1 |
240.0 |
240.0 |
| C02 |
C01 |
H2 |
H3 |
120.0 |
120.1 |
| H2 |
C01 |
C02 |
H4 |
59.7 |
301.6 |
| H1 |
C01 |
H2 |
H3 |
240.0 |
240.0 |
| H3 |
C01 |
C02 |
C10 |
60.0 |
300.0 |
| H3 |
C01 |
C02 |
N03 |
298.7 |
183.3 |
| C02 |
C01 |
H3 |
H1 |
120.0 |
120.0 |
| C02 |
C01 |
H3 |
H2 |
240.0 |
240.0 |
| H3 |
C01 |
C02 |
H4 |
179.7 |
61.6 |
| H1 |
C01 |
H3 |
H2 |
120.0 |
120.0 |
| C01 |
C02 |
H4 |
C10 |
236.4 |
238.4 |
| C01 |
C02 |
H4 |
N03 |
120.3 |
121.7 |
| H4 |
C02 |
C01 |
H1 |
299.7 |
181.6 |
| H4 |
C02 |
C01 |
H2 |
59.7 |
301.6 |
| H4 |
C02 |
C01 |
H3 |
179.7 |
61.6 |
| N03 |
C02 |
H4 |
C10 |
116.1 |
116.8 |
| H4 |
C02 |
C10 |
N09 |
296.6 |
299.3 |
| H4 |
C02 |
C10 |
C06 |
117.2 |
119.3 |
| H4 |
C02 |
N03 |
C04 |
243.5 |
240.8 |
| H4 |
C02 |
N03 |
H5 |
63.5 |
60.8 |
| H5 |
N03 |
C02 |
C10 |
180.0 |
180.0 |
| C02 |
N03 |
H5 |
C04 |
180.0 |
180.0 |
| H5 |
N03 |
C02 |
H4 |
63.5 |
60.8 |
| H5 |
N03 |
C04 |
O05 |
359.4 |
0.1 |
| H7 |
N09 |
C08 |
C11 |
358.7 |
0.0 |
| C11 |
C12 |
H8 |
C13 |
180.0 |
180.1 |
| H8 |
C12 |
C13 |
H9 |
359.5 |
360.0 |
| H9 |
C13 |
C12 |
H8 |
359.5 |
360.0 |
| H10 |
C14 |
C13 |
H9 |
359.9 |
0.1 |
| H12 |
C19 |
H11 |
H13 |
120.0 |
120.0 |
| H11 |
C19 |
H12 |
H13 |
240.1 |
239.9 |
| H11 |
C19 |
H13 |
H12 |
119.9 |
120.0 |
| H14 |
N21 |
C20 |
N26 |
173.0 |
185.2 |
| H15 |
C23 |
C22 |
C24 |
60.3 |
300.0 |
| C22 |
C23 |
H15 |
H16 |
120.0 |
120.1 |
| C22 |
C23 |
H15 |
H17 |
240.0 |
240.1 |
| H16 |
C23 |
H15 |
H17 |
120.0 |
120.0 |
| H16 |
C23 |
C22 |
C24 |
180.3 |
60.0 |
| C22 |
C23 |
H16 |
H15 |
240.0 |
239.9 |
| C22 |
C23 |
H16 |
H17 |
120.0 |
120.0 |
| H15 |
C23 |
H16 |
H17 |
240.0 |
240.1 |
| H17 |
C23 |
C22 |
C24 |
300.3 |
180.1 |
| C22 |
C23 |
H17 |
H15 |
120.0 |
120.0 |
| C22 |
C23 |
H17 |
H16 |
240.0 |
239.9 |
| H15 |
C23 |
H17 |
H16 |
120.0 |
119.9 |
| C22 |
C24 |
H18 |
H19 |
120.0 |
119.9 |
| C22 |
C24 |
H18 |
H20 |
240.0 |
239.9 |
| H19 |
C24 |
H18 |
H20 |
119.9 |
120.0 |
| C22 |
C24 |
H19 |
H18 |
239.9 |
240.1 |
| C22 |
C24 |
H19 |
H20 |
120.0 |
120.1 |
| H18 |
C24 |
H19 |
H20 |
240.0 |
240.0 |
| C22 |
C24 |
H20 |
H18 |
120.1 |
120.0 |
| C22 |
C24 |
H20 |
H19 |
240.0 |
240.0 |
| H18 |
C24 |
H20 |
H19 |
120.0 |
120.0 |
| H22 |
C25 |
H21 |
H23 |
120.0 |
120.0 |
| H21 |
C25 |
H22 |
H23 |
240.0 |
240.0 |
| H21 |
C25 |
H23 |
H22 |
120.0 |
120.0 |