Atom Nomenclature for 6CA

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 6CA

Atom Name (V3) Atom Name (V2)
O35 O35
C33 C33
O34 O34
C32 C32
C36 C36
C37 C37
C38 C38
C39 C39
C31 C31
N30 N30
C27 C27
C28 C28
C29 C29
C26 C26
C25 C25
C24 C24
O23 O23
C22 C22
C21 C21
C20 C20
C19 C19
C18 C18
C17 C17
O16 O16
C11 C11
C12 C12
C13 C13
C10 C10
C9 C9
C8 C8
C5 C5
C6 C6
C7 C7
C4 C4
C3 C3
C2 C2
C1 C1
O14 O14
O15 O15
H34 H34
H36 H36
H37 H37
H38 H38
H39 H39
H30 H30
H28 H28
H29 H29
H26 H26
H25 H25
H221 1H22
H222 2H22
H211 1H21
H212 2H21
H201 1H20
H202 2H20
H191 1H19
H192 2H19
H181 1H18
H182 2H18
H171 1H17
H172 2H17
H12 H12
H13 H13
H10 H10
H9 H9
H6 H6
H7 H7
H4 H4
H3 H3
H14 H14