Atom Nomenclature for 6BQ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 6BQ

Atom Name (V3) Atom Name (V2)
C9 C1
C10 C2
C11 C3
C12 C4
C13 C5
C14 C6
C15 C7
C16 C8
C1 C9
C2 C10
C3 C11
C17 C12
C18 C13
C4 C14
C19 C15
C5 C16
C6 C17
C20 C18
C21 C19
C7 C20
C8 C21
C22 C22
O3 O1
O2 O2
O1 O3
O6 O4
O7 O5
O5 O6
O4 O7
C1A C23
C2A C24
C3A C25
C4A C26
C5A C27
C6A C28
C7A C29
O1A O8
O2A O9
N3A N1
O5A O10
C1B C30
C2B C31
C3B C32
C4B C33
C5B C34
C6B C35
C7B C36
O1B O11
O3B O12
O4B O13
O5B O14
C1C C37
C2C C38
C3C C39
C4C C40
C5C C41
O1C O15
C59 C42
P59 P1
O60 O16
O61 O17
O62 O18
H1 H1
H2 H2
H3 H3
H4 H4
H6 H5
H8 H6
H5 H7
H11 H8
H10 H9
H12 H10
H14 H11
H13 H12
H15 H13
H17 H14
H16 H15
H18 H16
H19 H17
H20 H18
H21 H19
H22 H20
H23 H21
H24 H22
H25 H23
H26 H24
H27 H25
H28 H26
H29 H27
H30 H28
H7 H29
H33 H30
H32 H31
H34 H32
H36 H33
H35 H34
H37 H35
H38 H36
H9 H37
H40 H38
H41 H39
H42 H40
H43 H41
H44 H42
H45 H43
H47 H44
H46 H45
H50 H46
H48 H47
H49 H48
H52 H50
H53 H51
H54 H52
H55 H53
H56 H54
H59 H55
H57 H56
H58 H57
H60 H58
H61 H59
H62 H60
H63 H61
H65 H62
H66 H63
H67 H64
H69 H65
H68 H66
H70 H67
H72 H68
H71 H69
H73 H70
H75 H71
H76 H72
H77 H73
H39 H74
H51 H75