Atom Nomenclature for 6BH

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 6BH

Atom Name (V3) Atom Name (V2)
OAB O1
NBA N1
OAC O2
CAY C1
CAP C2
CAN C3
CAM C4
CAW C5
CAZ C6
CAT C7
OAA O3
NAR N2
CAV C8
CAO C9
CAK C10
CAH C11
CAL C12
CAX C13
OAS O4
CAQ C14
CAU C15
CAI C16
CAF C17
CAE C18
CAG C19
CAJ C20
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16