PDB Chemical Component 6AT
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 6AT
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CAA |
S2 |
1.784 |
1.811 |
| S2 |
C2 |
1.786 |
1.762 |
| N1 |
C2 |
1.351 |
1.327 |
| N1 |
C6 |
1.346 |
1.328 |
| C2 |
N3 |
1.348 |
1.324 |
| N6 |
C6 |
1.333 |
1.384 |
| C6 |
C5 |
1.340 |
1.406 |
| N3 |
C4 |
1.353 |
1.330 |
| C5 |
C4 |
1.340 |
1.405 |
| C5 |
N7 |
1.331 |
1.356 |
| C4 |
N9 |
1.334 |
1.371 |
| N7 |
C8 |
1.327 |
1.301 |
| N9 |
C8 |
1.334 |
1.365 |
| N9 |
C1' |
1.499 |
1.465 |
| O4' |
C1' |
1.446 |
1.444 |
| O4' |
C4' |
1.452 |
1.444 |
| C1' |
C2' |
1.523 |
1.544 |
| C4' |
C5' |
1.536 |
1.530 |
| C4' |
C3' |
1.518 |
1.545 |
| O5' |
C5' |
1.433 |
1.429 |
| O5' |
PBF |
1.614 |
1.610 |
| C2' |
O2' |
1.433 |
1.429 |
| C2' |
C3' |
1.515 |
1.545 |
| OAD |
PBF |
1.477 |
1.479 |
| C3' |
O3' |
1.442 |
1.429 |
| PBF |
OAT |
1.624 |
1.610 |
| PBF |
OAJ |
1.606 |
1.610 |
| OAK |
PBG |
1.601 |
1.480 |
| OAT |
PBG |
1.622 |
1.611 |
| PBG |
OAE |
1.480 |
1.610 |
| PBG |
OAS |
1.610 |
1.610 |
| OAS |
PBE |
1.612 |
1.610 |
| OAH |
PBE |
1.476 |
1.480 |
| PBE |
OAC |
1.483 |
1.610 |
| PBE |
OAI |
1.619 |
1.610 |
| OAI |
H1 |
0.950 |
0.967 |
| OAC |
H2 |
0.950 |
0.967 |
| OAE |
H3 |
0.950 |
0.967 |
| OAJ |
H4 |
0.950 |
0.967 |
| C5' |
H5 |
1.100 |
1.091 |
| C5' |
H6 |
1.100 |
1.089 |
| C4' |
H7 |
1.099 |
1.090 |
| C3' |
H8 |
1.100 |
1.090 |
| O3' |
H9 |
0.950 |
0.967 |
| C2' |
H10 |
1.100 |
1.090 |
| O2' |
H11 |
0.950 |
0.967 |
| C1' |
H12 |
1.100 |
1.090 |
| C8 |
H13 |
1.080 |
1.080 |
| CAA |
H14 |
1.100 |
1.090 |
| CAA |
H15 |
1.101 |
1.090 |
| CAA |
H16 |
1.100 |
1.090 |
| N6 |
H17 |
1.000 |
0.970 |
| N6 |
H18 |
1.000 |
0.970 |
Bond Angles for 6AT
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N7 |
C8 |
H13 |
125.7 |
125.0 |
| N9 |
C8 |
H13 |
125.8 |
125.0 |
| N9 |
C1' |
H12 |
109.8 |
110.4 |
| O4' |
C1' |
C2' |
106.3 |
104.8 |
| O4' |
C1' |
H12 |
110.5 |
110.4 |
| O4' |
C4' |
C3' |
108.1 |
104.8 |
| O4' |
C4' |
H7 |
108.8 |
110.5 |
| C1' |
C2' |
H10 |
109.5 |
110.6 |
| C4' |
C5' |
H5 |
109.3 |
109.5 |
| C4' |
C5' |
H6 |
109.2 |
109.5 |
| C4' |
C3' |
O3' |
109.4 |
110.5 |
| C3' |
C4' |
H7 |
107.9 |
110.4 |
| C4' |
C3' |
H8 |
110.4 |
110.5 |
| O5' |
C5' |
H5 |
109.3 |
109.4 |
| O5' |
C5' |
H6 |
109.3 |
109.5 |
| O2' |
C2' |
H10 |
110.8 |
110.4 |
| C2' |
O2' |
H11 |
109.5 |
114.0 |
| C2' |
C3' |
H8 |
110.5 |
110.6 |
| O3' |
C3' |
H8 |
111.5 |
110.5 |
| C3' |
O3' |
H9 |
109.5 |
114.0 |
| PBF |
OAJ |
H4 |
109.5 |
113.9 |
| OAK |
PBG |
OAE |
110.7 |
109.5 |
| PBG |
OAE |
H3 |
109.5 |
114.0 |
| OAH |
PBE |
OAC |
120.0 |
109.5 |
| PBE |
OAC |
H2 |
109.5 |
113.9 |
| PBE |
OAI |
H1 |
109.5 |
114.0 |
| H5 |
C5' |
H6 |
109.5 |
109.5 |
| H14 |
CAA |
H15 |
109.5 |
109.5 |
| H14 |
CAA |
H16 |
109.5 |
109.5 |
| H15 |
CAA |
H16 |
109.5 |
109.5 |
| H17 |
N6 |
H18 |
109.4 |
120.1 |
Torsion Angles for 6AT
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5 |
N7 |
C8 |
H13 |
181.5 |
180.1 |
| C4 |
N9 |
C8 |
H13 |
178.2 |
180.2 |
| C4 |
N9 |
C1' |
H12 |
17.7 |
325.5 |
| N9 |
C8 |
N7 |
H13 |
180.0 |
179.9 |
| N7 |
C8 |
N9 |
H13 |
180.0 |
180.1 |
| C8 |
N9 |
C1' |
H12 |
194.7 |
145.9 |
| O4' |
C1' |
N9 |
H12 |
239.5 |
237.7 |
| N9 |
C1' |
C2' |
H10 |
27.9 |
24.1 |
| N9 |
C1' |
O4' |
H12 |
120.0 |
122.3 |
| C1' |
O4' |
C4' |
C3' |
357.1 |
40.5 |
| C1' |
O4' |
C4' |
H7 |
240.2 |
281.6 |
| O4' |
C1' |
C2' |
H10 |
269.9 |
265.2 |
| O4' |
C4' |
C5' |
H5 |
87.0 |
309.6 |
| O4' |
C4' |
C5' |
H6 |
206.7 |
189.6 |
| O4' |
C4' |
C3' |
O3' |
260.9 |
217.3 |
| C3' |
C4' |
O4' |
H7 |
116.9 |
118.9 |
| O4' |
C4' |
C3' |
H8 |
137.8 |
94.8 |
| O4' |
C1' |
C2' |
H12 |
119.4 |
118.8 |
| O2' |
C2' |
C1' |
H10 |
237.7 |
237.4 |
| C1' |
C2' |
O2' |
H11 |
180.0 |
183.9 |
| C1' |
C2' |
C3' |
H8 |
213.8 |
241.4 |
| O5' |
C5' |
C4' |
H5 |
239.9 |
120.0 |
| O5' |
C5' |
C4' |
H6 |
120.2 |
240.0 |
| H5 |
C5' |
C4' |
H6 |
240.3 |
120.0 |
| O4' |
C4' |
C3' |
H7 |
242.5 |
241.0 |
| C3' |
C4' |
C5' |
H5 |
208.8 |
65.0 |
| C3' |
C4' |
C5' |
H6 |
328.6 |
305.0 |
| C2' |
C3' |
C4' |
H8 |
241.8 |
241.2 |
| O3' |
C3' |
C4' |
H8 |
123.0 |
122.6 |
| C4' |
C3' |
O3' |
H9 |
180.0 |
180.0 |
| C4' |
C5' |
O5' |
H5 |
120.1 |
240.0 |
| C4' |
C5' |
O5' |
H6 |
239.9 |
120.0 |
| H5 |
C5' |
O5' |
H6 |
119.8 |
240.0 |
| O5' |
PBF |
OAJ |
H4 |
120.4 |
300.0 |
| O4' |
C1' |
C2' |
O2' |
147.6 |
142.6 |
| C1' |
C2' |
O2' |
H10 |
121.6 |
122.7 |
| O2' |
C2' |
C3' |
H8 |
94.3 |
122.7 |
| O4' |
C1' |
C2' |
C3' |
27.2 |
24.0 |
| C2' |
C3' |
C4' |
H7 |
137.1 |
95.0 |
| C4' |
C3' |
C2' |
H8 |
118.1 |
118.7 |
| O3' |
C3' |
C2' |
H8 |
235.5 |
237.3 |
| C2' |
C3' |
O3' |
H9 |
66.2 |
65.3 |
| OAD |
PBF |
OAJ |
H4 |
0.0 |
180.0 |
| O3' |
C3' |
C4' |
H7 |
18.4 |
336.3 |
| C4' |
C3' |
O3' |
H8 |
237.7 |
237.4 |
| C2' |
C3' |
O3' |
H8 |
123.9 |
122.8 |
| OAK |
PBG |
OAE |
H3 |
360.0 |
180.0 |
| OAT |
PBG |
OAE |
H3 |
238.4 |
60.0 |
| OAS |
PBE |
OAC |
H2 |
123.3 |
180.1 |
| OAS |
PBE |
OAI |
H1 |
246.5 |
60.1 |
| OAH |
PBE |
OAC |
H2 |
0.0 |
60.1 |
| OAH |
PBE |
OAI |
H1 |
0.0 |
180.1 |
| OAC |
PBE |
OAI |
H1 |
131.2 |
300.1 |
| C4' |
C5' |
H5 |
H6 |
119.6 |
240.0 |
| O5' |
C5' |
H5 |
H6 |
240.4 |
120.0 |
| C4' |
C5' |
H6 |
H5 |
240.4 |
120.0 |
| O5' |
C5' |
H6 |
H5 |
119.6 |
240.0 |
| O4' |
C4' |
H7 |
C3' |
117.1 |
115.5 |
| H7 |
C4' |
C5' |
H5 |
326.7 |
187.3 |
| H7 |
C4' |
C5' |
H6 |
86.4 |
67.3 |
| H7 |
C4' |
C3' |
O3' |
18.4 |
336.3 |
| H7 |
C4' |
C3' |
H8 |
255.3 |
213.7 |
| C4' |
C3' |
H8 |
O3' |
121.8 |
122.6 |
| H8 |
C3' |
C4' |
H7 |
255.3 |
213.7 |
| H8 |
C3' |
O3' |
H9 |
302.3 |
302.5 |
| H9 |
O3' |
C3' |
H8 |
302.3 |
302.5 |
| H10 |
C2' |
O2' |
H11 |
58.4 |
61.2 |
| H10 |
C2' |
C3' |
H8 |
331.1 |
0.1 |
| H11 |
O2' |
C2' |
H10 |
58.4 |
61.2 |
| O4' |
C1' |
H12 |
C2' |
243.2 |
244.6 |
| H12 |
C1' |
C2' |
H10 |
150.5 |
146.4 |
| H15 |
CAA |
H14 |
H16 |
120.0 |
120.1 |
| H14 |
CAA |
H15 |
H16 |
240.0 |
239.9 |
| H14 |
CAA |
H16 |
H15 |
120.0 |
120.1 |