Atom Nomenclature for 6A8

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 6A8

Atom Name (V3) Atom Name (V2)
O24 O1
C22 C1
C25 C2
C30 C3
C29 C4
C28 C5
C27 C6
C26 C7
N21 N1
C18 C8
C20 C9
C31 C10
C36 C11
C35 C12
C34 C13
C37 C14
N38 N2
C33 C15
C32 C16
C17 C17
O19 O2
N2 N3
C1 C18
B4 B1
O1 O3
C4 C19
C2 C20
O3 O4
C3 C21
C11 C22
C12 C23
N13 N4
C14 C24
N15 N5
N16 N6
C6 C25
O2 O5
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36