PDB Chemical Component 693

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 693

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.429 1.400
C1 C6 1.425 1.391
C1 C7 1.407 1.479
C2 C3 1.394 1.365
C2 HC2 1.074 1.080
C3 C4 1.373 1.389
C3 HC3 1.079 1.080
C4 C5 1.340 1.407
C4 N3 1.285 1.380
C5 C6 1.391 1.395
C5 N4 1.322 1.356
C6 HC6 1.078 1.080
C7 N1 1.319 1.332
C7 N2 1.324 1.332
N1 HH11 1.011 0.970
N1 HH12 0.996 0.970
N2 HH21 1.008 0.971
N2 HH22 0.994 0.970
N3 C8 1.293 1.369
N3 HN3 0.992 0.970
N4 C8 1.321 1.311
C8 C1' 1.415 1.478
C1' C2' 1.402 1.396
C1' C6' 1.426 1.399
C2' C3' 1.402 1.380
C2' HC2' 1.080 1.080
C3' CVX 1.555 1.506
C3' C4' 1.382 1.382
CVX CWX 1.546 1.507
CVX C6X 1.599 1.530
CVX H31B 1.081 1.090
CWX OXX 1.221 1.220
CWX OYX 1.215 1.220
C6X C7X 1.571 1.507
C6X H42A 1.077 1.091
C6X H42B 1.079 1.090
C7X O8X 1.222 1.276
C7X O9X 1.230 1.275
C4' C5' 1.396 1.392
C4' HC4' 1.079 1.081
C5' C6' 1.403 1.397
C5' C1B 1.395 1.483
C6' O6' 1.386 1.357
C1B C2B 1.408 1.395
C1B C6B 1.402 1.394
C2B C3B 1.378 1.383
C2B F2B 1.408 1.351
C3B C4B 1.391 1.383
C3B H3B 1.078 1.080
C4B C5B 1.380 1.383
C4B H4B 1.080 1.080
C5B C6B 1.385 1.380
C5B H5B 1.079 1.080
C6B H6B 1.080 1.080

Bond Angles for 693

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C6 117.1 120.3
C2 C1 C7 120.0 119.9
C1 C2 C3 122.7 120.4
C1 C2 HC2 119.7 119.7
C6 C1 C7 122.9 119.9
C1 C6 C5 118.4 119.5
C1 C6 HC6 121.1 120.3
C1 C7 N1 120.1 120.0
C1 C7 N2 118.5 120.0
C3 C2 HC2 117.6 119.8
C2 C3 C4 116.6 120.2
C2 C3 HC3 121.9 119.9
C4 C3 HC3 121.5 120.0
C3 C4 C5 123.4 120.1
C3 C4 N3 130.0 133.7
C5 C4 N3 106.7 106.2
C4 C5 C6 121.9 119.5
C4 C5 N4 112.5 107.2
C4 N3 C8 105.6 107.2
C4 N3 HN3 129.7 126.3
C6 C5 N4 125.6 133.3
C5 C6 HC6 120.5 120.2
C5 N4 C8 99.5 109.6
N1 C7 N2 121.3 120.0
C7 N1 HH11 117.0 120.0
C7 N1 HH12 127.4 120.0
C7 N2 HH21 120.4 120.0
C7 N2 HH22 123.3 120.0
HH11 N1 HH12 115.6 120.1
HH21 N2 HH22 116.2 120.0
C8 N3 HN3 124.7 126.4
N3 C8 N4 115.7 109.8
N3 C8 C1' 121.3 125.1
N4 C8 C1' 122.9 125.1
C8 C1' C2' 121.1 120.1
C8 C1' C6' 122.5 120.1
C2' C1' C6' 116.4 119.8
C1' C2' C3' 123.4 120.2
C1' C2' HC2' 118.2 119.9
C1' C6' C5' 121.5 119.6
C1' C6' O6' 121.4 120.2
C3' C2' HC2' 118.3 119.9
C2' C3' CVX 119.1 119.8
C2' C3' C4' 117.6 120.4
CVX C3' C4' 123.3 119.8
C3' CVX CWX 103.3 109.5
C3' CVX C6X 113.4 109.5
C3' CVX H31B 108.4 109.5
C3' C4' C5' 122.6 120.3
C3' C4' HC4' 119.3 119.9
CWX CVX C6X 112.7 109.4
CWX CVX H31B 109.3 109.5
CVX CWX OXX 118.1 120.0
CVX CWX OYX 117.8 120.0
C6X CVX H31B 109.6 109.5
CVX C6X C7X 116.5 109.5
CVX C6X H42A 108.6 109.5
CVX C6X H42B 110.3 109.5
OXX CWX OYX 124.1 120.0
C7X C6X H42A 106.1 109.4
C7X C6X H42B 107.9 109.5
C6X C7X O8X 120.1 120.0
C6X C7X O9X 117.1 120.1
H42A C6X H42B 106.9 109.4
O8X C7X O9X 122.8 119.9
C5' C4' HC4' 118.1 119.8
C4' C5' C6' 118.5 119.8
C4' C5' C1B 119.0 120.1
C6' C5' C1B 122.5 120.0
C5' C6' O6' 117.1 120.3
C5' C1B C2B 120.5 120.2
C5' C1B C6B 122.1 120.1
C2B C1B C6B 117.4 119.7
C1B C2B C3B 120.9 119.8
C1B C2B F2B 121.2 120.1
C1B C6B C5B 121.6 119.9
C1B C6B H6B 119.9 120.0
C3B C2B F2B 117.9 120.1
C2B C3B C4B 120.5 120.1
C2B C3B H3B 119.5 119.9
C4B C3B H3B 120.1 120.0
C3B C4B C5B 119.8 120.3
C3B C4B H4B 120.2 119.8
C5B C4B H4B 120.0 119.9
C4B C5B C6B 119.8 120.2
C4B C5B H5B 120.3 119.8
C6B C5B H5B 119.8 119.9
C5B C6B H6B 118.5 120.1

Torsion Angles for 693

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 C1 C2 C7 179.6 180.3
C2 C1 C6 C5 360.0 359.5
C2 C1 C6 HC6 179.9 179.7
C2 C1 C7 N1 187.5 180.0
C2 C1 C7 N2 7.7 0.0
C3 C2 C1 HC2 180.0 180.0
C1 C2 C3 C4 0.1 360.0
C1 C2 C3 HC3 180.5 180.0
C2 C1 C6 C7 180.5 179.7
C6 C1 C2 C3 360.0 0.3
C6 C1 C2 HC2 180.0 180.2
C6 C1 C7 N1 8.0 359.7
C6 C1 C7 N2 188.1 179.7
C4 C5 C6 C1 360.0 0.5
C1 C6 C5 N4 179.8 180.2
C5 C6 C1 HC6 180.1 179.8
C2 C1 C7 C6 179.5 180.3
C7 C1 C2 C3 180.4 180.0
C7 C1 C2 HC2 0.4 359.9
C7 C1 C6 C5 179.5 179.8
C7 C1 C6 HC6 359.4 360.0
N1 C7 C1 N2 179.8 180.0
C1 C7 N1 HH11 358.7 180.1
C1 C7 N1 HH12 179.6 0.0
C1 C7 N2 HH21 3.0 360.0
C1 C7 N2 HH22 179.3 179.7
C3 C2 C1 C6 360.0 0.3
C3 C2 C1 C7 180.4 180.0
C1 C2 C3 HC2 180.0 180.0
C4 C3 C2 HC3 179.6 180.0
C2 C3 C4 C5 359.9 360.0
C2 C3 C4 N3 179.8 180.0
HC2 C2 C1 C6 180.0 180.2
HC2 C2 C1 C7 0.4 359.9
C1 C2 HC2 C3 180.0 180.0
HC2 C2 C3 C4 180.1 180.0
HC2 C2 C3 HC3 0.5 0.0
C4 C3 C2 HC2 180.1 180.0
C2 C3 C4 HC3 180.4 180.0
C5 C4 C3 N3 180.0 180.0
C3 C4 C5 C6 0.1 359.8
C3 C4 C5 N4 180.3 180.0
C3 C4 N3 C8 179.8 180.0
C3 C4 N3 HN3 0.4 0.1
HC3 C3 C2 HC2 0.5 0.0
C2 C3 HC3 C4 179.5 180.0
HC3 C3 C4 C5 179.5 180.0
HC3 C3 C4 N3 359.4 360.0
C1 C6 C5 C4 360.0 0.5
C5 C4 C3 HC3 179.5 180.0
C3 C4 C5 N3 180.0 180.0
C5 C4 N3 C8 359.8 360.0
C5 C4 N3 HN3 180.4 180.0
C6 C5 C4 N4 179.8 179.8
C4 C5 C6 HC6 180.1 180.3
C4 C5 N4 C8 359.8 0.0
N3 C4 C3 HC3 359.4 360.0
C3 C4 N3 C5 180.0 180.0
N3 C4 C5 C6 180.1 179.8
N3 C4 C5 N4 0.3 360.0
C8 N3 C4 HN3 179.4 180.0
C4 N3 C8 N4 0.1 0.0
C4 N3 C8 C1' 177.2 180.0
C5 C6 C1 C7 179.5 179.8
C1 C6 C5 HC6 179.9 180.2
C6 C5 C4 N3 180.1 179.8
C4 C5 C6 N4 180.2 180.3
C6 C5 N4 C8 180.0 180.3
N4 C5 C4 N3 0.3 360.0
C4 C5 N4 C6 179.8 179.7
N4 C5 C6 HC6 359.9 0.0
N3 C8 N4 C5 0.1 360.0
C5 N4 C8 C1' 183.0 180.0
HC6 C6 C1 C7 359.4 360.0
C1 C6 HC6 C5 180.1 179.8
HC6 C6 C5 N4 359.9 0.0
C1 C7 N1 N2 180.2 180.0
N1 C7 N2 HH21 183.2 180.0
N1 C7 N2 HH22 359.5 359.7
HH11 N1 C7 HH12 179.1 180.0
C1 C7 N2 N1 179.8 180.0
N2 C7 N1 HH11 178.5 0.0
N2 C7 N1 HH12 359.4 180.0
HH21 N2 C7 HH22 183.7 180.3
HH11 N1 C7 N2 178.5 0.0
C7 N1 HH11 HH12 180.8 180.0
HH12 N1 C7 N2 359.4 180.0
C7 N1 HH12 HH11 179.1 180.0
C7 N2 HH21 HH22 176.5 179.7
C7 N2 HH22 HH21 183.6 180.3
C4 N3 C8 HN3 180.6 180.0
C5 N4 C8 N3 0.1 360.0
N4 C8 N3 C1' 182.9 180.0
N3 C8 C1' C2' 179.9 140.3
N3 C8 C1' C6' 359.8 320.0
C4 N3 HN3 C8 179.3 180.0
HN3 N3 C8 N4 179.6 180.0
HN3 N3 C8 C1' 356.6 359.9
N4 C8 N3 HN3 179.6 180.0
N3 C8 N4 C1' 177.0 180.0
N4 C8 C1' C2' 356.7 320.3
N4 C8 C1' C6' 176.7 139.9
C1' C8 N3 HN3 356.6 359.9
N3 C8 C1' N4 183.2 180.0
C2' C1' C8 C6' 180.0 180.3
C8 C1' C2' C3' 180.0 180.0
C8 C1' C2' HC2' 359.9 359.9
C8 C1' C6' C5' 180.7 179.8
C8 C1' C6' O6' 2.2 0.3
C8 C1' C2' C6' 180.0 179.7
C2' C1' C6' C5' 0.6 359.4
C2' C1' C6' O6' 182.2 180.0
C3' C2' C1' HC2' 180.1 180.0
C1' C2' C3' CVX 178.9 180.0
C1' C2' C3' C4' 359.7 360.0
C8 C1' C6' C2' 180.0 180.3
C6' C1' C2' C3' 0.0 0.3
C6' C1' C2' HC2' 179.9 180.3
C4' C5' C6' C1' 359.0 0.5
C1' C6' C5' C1B 176.7 180.3
C5' C6' C1' O6' 178.5 179.5
C3' C2' C1' C6' 0.0 0.3
C1' C2' C3' HC2' 179.9 180.0
CVX C3' C2' C4' 179.3 180.0
C2' C3' CVX CWX 280.8 59.9
C2' C3' CVX C6X 158.5 300.0
C2' C3' CVX H31B 36.6 180.0
C2' C3' C4' C5' 360.0 360.0
C2' C3' C4' HC4' 179.8 180.0
HC2' C2' C1' C6' 179.9 180.3
C1' C2' HC2' C3' 180.1 180.0
HC2' C2' C3' CVX 359.1 0.0
HC2' C2' C3' C4' 179.8 180.0
CVX C3' C2' HC2' 359.1 0.0
C2' C3' CVX C4' 180.8 180.0
CVX C3' C4' C5' 180.7 180.0
CVX C3' C4' HC4' 0.5 360.0
CWX CVX C3' C6X 122.2 119.9
CWX CVX C3' H31B 244.2 239.9
C3' CVX CWX OXX 102.1 0.1
C3' CVX CWX OYX 283.0 180.0
C6X CVX C3' H31B 121.9 120.0
C3' CVX C6X C7X 226.1 185.0
C3' CVX C6X H42A 345.8 305.0
C3' CVX C6X H42B 102.7 64.9
C4' C3' C2' HC2' 179.8 180.0
C2' C3' C4' CVX 179.2 180.0
C4' C3' CVX CWX 100.0 240.0
C4' C3' CVX C6X 337.8 120.0
C4' C3' CVX H31B 215.8 0.0
C5' C4' C3' HC4' 180.2 180.0
C3' C4' C5' C6' 0.6 359.7
C3' C4' C5' C1B 182.9 180.0
CWX CVX C3' C4' 100.0 240.0
C3' CVX CWX C6X 237.3 240.0
C3' CVX CWX H31B 115.2 120.1
C6X CVX CWX H31B 237.9 240.0
CWX CVX C6X C7X 109.2 65.0
CWX CVX C6X H42A 228.9 185.0
CWX CVX C6X H42B 345.9 305.0
OXX CWX CVX OYX 179.1 180.0
C6X CVX C3' C4' 337.8 120.0
C3' CVX C6X CWX 116.9 120.0
C3' CVX C6X H31B 238.7 240.0
CWX CVX C6X H31B 121.9 120.0
C6X CVX CWX OXX 224.8 120.0
C6X CVX CWX OYX 45.7 300.0
C7X C6X CVX H42A 240.3 240.0
C7X C6X CVX H42B 123.4 120.1
CVX C6X C7X O8X 332.3 359.9
CVX C6X C7X O9X 152.6 180.0
H42A C6X CVX H42B 243.1 240.0
H31B CVX C3' C4' 215.8 0.0
C3' CVX H31B CWX 248.1 239.9
C3' CVX H31B C6X 124.2 120.0
CWX CVX H31B C6X 236.1 240.0
H31B CVX CWX OXX 346.9 240.0
H31B CVX CWX OYX 167.8 60.0
H31B CVX C6X C7X 347.4 305.0
H31B CVX C6X H42A 107.1 65.0
H31B CVX C6X H42B 224.0 185.0
OXX CWX CVX C6X 224.8 120.0
OXX CWX CVX H31B 346.9 240.0
CVX CWX OXX OYX 181.0 180.0
OYX CWX CVX C6X 45.7 300.0
OYX CWX CVX H31B 167.8 60.0
CVX CWX OYX OXX 179.0 180.0
C7X C6X CVX H31B 347.4 305.0
CVX C6X C7X H42A 121.1 120.0
CVX C6X C7X H42B 235.4 239.9
H42A C6X C7X H42B 114.3 119.9
O8X C7X C6X O9X 179.7 180.0
H42A C6X CVX H31B 107.1 65.0
CVX C6X H42A C7X 234.0 240.0
CVX C6X H42A H42B 119.1 120.0
C7X C6X H42A H42B 245.0 240.0
H42A C6X C7X O8X 211.3 240.0
H42A C6X C7X O9X 31.6 60.0
H42B C6X CVX H31B 224.0 185.0
CVX C6X H42B C7X 128.2 120.1
CVX C6X H42B H42A 242.0 240.0
C7X C6X H42B H42A 113.8 119.9
H42B C6X C7X O8X 96.9 120.0
H42B C6X C7X O9X 277.2 300.1
O8X C7X C6X H42A 211.3 240.0
O8X C7X C6X H42B 96.9 120.0
C6X C7X O8X O9X 180.3 180.0
O9X C7X C6X H42A 31.6 60.0
O9X C7X C6X H42B 277.2 300.1
C6X C7X O9X O8X 179.7 180.0
C1' C6' C5' C4' 359.0 0.5
C3' C4' C5' HC4' 179.8 180.0
C6' C5' C4' C1B 177.7 179.7
C4' C5' C6' O6' 177.6 180.0
C4' C5' C1B C2B 118.0 244.8
C4' C5' C1B C6B 299.7 65.0
C3' C4' HC4' C5' 180.2 180.0
HC4' C4' C5' C6' 180.8 179.7
HC4' C4' C5' C1B 3.1 360.0
C1' C6' C5' O6' 181.5 180.5
C6' C5' C4' HC4' 180.8 179.7
C4' C5' C6' C1B 182.4 180.3
C6' C5' C1B C2B 300.4 65.0
C6' C5' C1B C6B 122.1 245.3
C1B C5' C4' HC4' 3.1 360.0
C4' C5' C1B C6' 177.6 179.7
C1B C5' C6' O6' 355.2 359.7
C2B C1B C5' C6B 178.3 179.7
C5' C1B C2B C3B 182.1 179.7
C5' C1B C2B F2B 2.9 0.2
C5' C1B C6B C5B 178.0 180.1
C5' C1B C6B H6B 357.9 360.0
C1' C6' O6' C5' 178.5 179.5
O6' C6' C5' C1B 355.2 359.7
C5' C1B C2B C6B 181.6 180.3
C2B C1B C6B C5B 359.7 0.3
C2B C1B C6B H6B 179.5 180.2
C3B C2B C1B F2B 179.2 179.5
C1B C2B C3B C4B 359.8 0.6
C1B C2B C3B H3B 179.6 180.3
C5' C1B C6B C2B 178.4 179.7
C6B C1B C2B C3B 0.5 359.4
C6B C1B C2B F2B 181.3 180.0
C4B C5B C6B C1B 359.9 359.9
C1B C6B C5B H5B 180.0 180.0
C5B C6B C1B H6B 180.1 180.1
C3B C2B C1B C6B 0.5 359.4
C1B C2B C3B F2B 180.8 180.5
C4B C3B C2B H3B 180.2 180.3
C2B C3B C4B C5B 359.7 359.7
C2B C3B C4B H4B 179.9 179.7
F2B C2B C1B C6B 181.3 180.0
C1B C2B F2B C3B 179.2 179.5
F2B C2B C3B C4B 179.0 180.0
F2B C2B C3B H3B 358.9 359.8
C4B C3B C2B F2B 179.0 180.0
C2B C3B C4B H3B 179.8 179.7
C5B C4B C3B H4B 179.8 179.9
C3B C4B C5B C6B 0.5 0.1
C3B C4B C5B H5B 180.3 180.1
H3B C3B C2B F2B 358.9 359.8
C2B C3B H3B C4B 180.2 180.3
H3B C3B C4B C5B 179.9 179.9
H3B C3B C4B H4B 0.1 360.0
C1B C6B C5B C4B 359.9 359.9
C5B C4B C3B H3B 179.9 179.9
C3B C4B C5B H4B 180.2 180.1
C6B C5B C4B H5B 180.1 180.0
C4B C5B C6B H6B 180.0 180.0
H4B C4B C3B H3B 0.1 360.0
C3B C4B H4B C5B 179.8 179.9
H4B C4B C5B C6B 180.2 180.0
H4B C4B C5B H5B 0.1 360.0
C1B C6B C5B H6B 179.9 179.9
C6B C5B C4B H4B 180.2 180.0
C4B C5B C6B H5B 179.9 180.0
H5B C5B C4B H4B 0.1 360.0
C4B C5B H5B C6B 180.1 180.0
H5B C5B C6B H6B 0.1 0.0
C1B C6B H6B C5B 180.1 180.1
H6B C6B C5B H5B 0.1 0.0