PDB Chemical Component 66D
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 66D
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CE |
CD |
1.419 |
1.530 |
| CD |
CC |
1.404 |
1.530 |
| O |
C |
1.239 |
1.208 |
| CC |
CD2 |
1.628 |
1.530 |
| CC |
CB |
1.505 |
1.530 |
| CB2 |
CA |
1.550 |
1.530 |
| C |
CA |
1.371 |
1.507 |
| CA |
CB |
1.579 |
1.530 |
| CA |
N |
1.410 |
1.469 |
| C |
OXT |
1.348 |
1.342 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
0.999 |
1.009 |
| CB |
H4 |
1.100 |
1.090 |
| CB |
H5 |
1.100 |
1.090 |
| CC |
H6 |
1.100 |
1.090 |
| CD2 |
H7 |
1.100 |
1.090 |
| CD2 |
H8 |
1.099 |
1.089 |
| CD2 |
H9 |
1.100 |
1.090 |
| CD |
H10 |
1.100 |
1.090 |
| CD |
H11 |
1.101 |
1.090 |
| CE |
H12 |
1.100 |
1.090 |
| CE |
H13 |
1.100 |
1.090 |
| CE |
H14 |
1.099 |
1.090 |
| CB2 |
H15 |
1.100 |
1.089 |
| CB2 |
H16 |
1.100 |
1.090 |
| CB2 |
H17 |
1.100 |
1.091 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for 66D
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CE |
CD |
H10 |
110.6 |
109.5 |
| CE |
CD |
H11 |
110.6 |
109.5 |
| CD |
CC |
H6 |
110.0 |
109.4 |
| O |
C |
OXT |
122.8 |
120.0 |
| CD2 |
CC |
H6 |
107.2 |
109.5 |
| CC |
CD2 |
H7 |
109.5 |
109.5 |
| CC |
CD2 |
H8 |
109.5 |
109.5 |
| CC |
CD2 |
H9 |
109.5 |
109.5 |
| CC |
CB |
H4 |
111.2 |
109.5 |
| CC |
CB |
H5 |
111.2 |
109.5 |
| CA |
CB |
H4 |
111.2 |
109.5 |
| CA |
CB |
H5 |
111.2 |
109.4 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| H |
N |
H2 |
109.5 |
111.0 |
| H4 |
CB |
H5 |
109.4 |
109.5 |
| H7 |
CD2 |
H8 |
109.5 |
109.4 |
| H7 |
CD2 |
H9 |
109.4 |
109.5 |
| H8 |
CD2 |
H9 |
109.5 |
109.5 |
| H10 |
CD |
H11 |
109.5 |
109.5 |
| H12 |
CE |
H13 |
109.5 |
109.4 |
| H12 |
CE |
H14 |
109.4 |
109.5 |
| H13 |
CE |
H14 |
109.4 |
109.4 |
| H15 |
CB2 |
H16 |
109.5 |
109.5 |
| H15 |
CB2 |
H17 |
109.4 |
109.5 |
| H16 |
CB2 |
H17 |
109.5 |
109.5 |
Torsion Angles for 66D
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CE |
CD |
CC |
H6 |
327.7 |
301.2 |
| H10 |
CD |
CE |
H11 |
238.5 |
120.0 |
| CD2 |
CC |
CD |
H6 |
111.5 |
120.0 |
| CD |
CC |
CD2 |
H7 |
180.0 |
174.8 |
| CD |
CC |
CD2 |
H8 |
300.0 |
294.7 |
| CD |
CC |
CD2 |
H9 |
60.0 |
54.8 |
| CD |
CC |
CB |
H4 |
178.6 |
307.2 |
| CD |
CC |
CB |
H5 |
300.8 |
187.2 |
| O |
C |
OXT |
HXT |
360.0 |
0.1 |
| CD |
CC |
CD2 |
H6 |
246.2 |
240.0 |
| CD2 |
CC |
CB |
H4 |
282.0 |
67.2 |
| CD2 |
CC |
CB |
H5 |
44.2 |
307.1 |
| H7 |
CD2 |
CC |
H8 |
240.0 |
240.0 |
| H7 |
CD2 |
CC |
H9 |
120.0 |
120.0 |
| H8 |
CD2 |
CC |
H9 |
240.0 |
240.0 |
| CA |
CB |
CC |
H4 |
241.1 |
120.0 |
| CA |
CB |
CC |
H5 |
118.9 |
240.0 |
| H4 |
CB |
CC |
H5 |
237.8 |
120.0 |
| CB2 |
CA |
CB |
H4 |
160.3 |
174.2 |
| CB2 |
CA |
CB |
H5 |
38.1 |
294.2 |
| CB2 |
CA |
N |
H |
180.0 |
56.0 |
| CB2 |
CA |
N |
H2 |
300.0 |
180.0 |
| C |
CA |
CB |
H4 |
285.7 |
294.2 |
| C |
CA |
CB |
H5 |
163.4 |
54.2 |
| C |
CA |
N |
H |
56.0 |
296.0 |
| C |
CA |
N |
H2 |
176.0 |
60.0 |
| CC |
CB |
CA |
H4 |
118.8 |
240.0 |
| CC |
CB |
CA |
H5 |
241.1 |
120.0 |
| CB |
CA |
N |
H |
294.3 |
176.1 |
| CB |
CA |
N |
H2 |
54.3 |
300.0 |
| H4 |
CB |
CA |
H5 |
122.3 |
240.0 |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| CA |
N |
H2 |
H |
240.0 |
236.0 |
| CC |
CB |
H4 |
H5 |
123.3 |
240.0 |
| CA |
CB |
H4 |
H5 |
236.7 |
120.0 |
| CC |
CB |
H5 |
H4 |
236.8 |
120.0 |
| CA |
CB |
H5 |
H4 |
123.3 |
240.0 |
| H6 |
CC |
CD2 |
H7 |
293.8 |
294.7 |
| H6 |
CC |
CD2 |
H8 |
53.8 |
54.7 |
| H6 |
CC |
CD2 |
H9 |
173.8 |
174.8 |
| H6 |
CC |
CB |
H4 |
31.0 |
187.2 |
| H6 |
CC |
CB |
H5 |
153.2 |
67.2 |
| H7 |
CD2 |
CC |
H6 |
293.8 |
294.7 |
| CC |
CD2 |
H7 |
H8 |
120.0 |
120.0 |
| CC |
CD2 |
H7 |
H9 |
240.0 |
240.0 |
| H8 |
CD2 |
H7 |
H9 |
120.0 |
120.0 |
| H8 |
CD2 |
CC |
H6 |
53.8 |
54.7 |
| CC |
CD2 |
H8 |
H7 |
239.9 |
240.0 |
| CC |
CD2 |
H8 |
H9 |
120.0 |
120.0 |
| H7 |
CD2 |
H8 |
H9 |
240.1 |
240.0 |
| H9 |
CD2 |
CC |
H6 |
173.8 |
174.8 |
| CC |
CD2 |
H9 |
H7 |
120.0 |
120.0 |
| CC |
CD2 |
H9 |
H8 |
240.0 |
240.0 |
| H7 |
CD2 |
H9 |
H8 |
120.0 |
120.0 |
| CE |
CD |
H10 |
H11 |
122.1 |
240.0 |
| H10 |
CD |
CC |
H6 |
208.4 |
61.2 |
| CE |
CD |
H11 |
H10 |
237.8 |
120.0 |
| H11 |
CD |
CC |
H6 |
86.9 |
181.2 |
| H12 |
CE |
CD |
H10 |
299.2 |
180.0 |
| H12 |
CE |
CD |
H11 |
60.7 |
60.0 |
| H13 |
CE |
H12 |
H14 |
120.0 |
120.0 |
| H13 |
CE |
CD |
H10 |
59.3 |
300.0 |
| H13 |
CE |
CD |
H11 |
180.8 |
180.0 |
| H12 |
CE |
H13 |
H14 |
240.1 |
240.0 |
| H14 |
CE |
CD |
H10 |
179.3 |
60.0 |
| H14 |
CE |
CD |
H11 |
300.7 |
300.0 |
| H12 |
CE |
H14 |
H13 |
120.0 |
119.9 |
| H16 |
CB2 |
H15 |
H17 |
120.0 |
120.1 |
| H15 |
CB2 |
H16 |
H17 |
240.0 |
239.9 |
| H15 |
CB2 |
H17 |
H16 |
120.0 |
120.1 |