Atom Nomenclature for 65Q

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 65Q

Atom Name (V3) Atom Name (V2)
C4 C1
C5 C2
C6 C3
N1 N1
N3 N2
FAD F1
CAX C4
FAE F2
FAF F3
OAM O1
CAQ C5
CAJ C6
CAH C7
CAG C8
CAI C9
CAR C10
SAN S1
CAU C11
SAO S2
C2 C12
NAB N3
NAC N4
CAT C13
CAA C14
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11