PDB Chemical Component 65P
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 65P
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| F20 |
C19 |
1.352 |
1.351 |
| F18 |
C17 |
1.353 |
1.350 |
| C42 |
C39 |
1.524 |
1.531 |
| C42 |
C45 |
1.520 |
1.508 |
| C39 |
C36 |
1.510 |
1.534 |
| C47 |
C46 |
1.513 |
1.508 |
| O69 |
C68 |
1.305 |
1.209 |
| C19 |
C17 |
1.369 |
1.386 |
| C19 |
C21 |
1.372 |
1.384 |
| C17 |
C15 |
1.372 |
1.384 |
| O71 |
C68 |
1.214 |
1.343 |
| C68 |
C52 |
1.525 |
1.507 |
| C36 |
O35 |
1.435 |
1.428 |
| C45 |
C46 |
1.406 |
1.382 |
| C45 |
C34 |
1.410 |
1.386 |
| C46 |
C29 |
1.416 |
1.393 |
| C21 |
C12 |
1.395 |
1.382 |
| C15 |
C13 |
1.386 |
1.383 |
| C52 |
C51 |
1.550 |
1.507 |
| C52 |
O54 |
1.454 |
1.429 |
| O35 |
C34 |
1.375 |
1.359 |
| C34 |
C32 |
1.387 |
1.393 |
| C29 |
C28 |
1.495 |
1.481 |
| C29 |
C30 |
1.398 |
1.395 |
| C51 |
C28 |
1.420 |
1.395 |
| C51 |
C05 |
1.428 |
1.383 |
| C12 |
C13 |
1.389 |
1.383 |
| C12 |
C09 |
1.511 |
1.507 |
| C28 |
C27 |
1.417 |
1.407 |
| C01 |
C05 |
1.515 |
1.507 |
| C05 |
N06 |
1.345 |
1.317 |
| C27 |
C25 |
1.431 |
1.462 |
| C27 |
C07 |
1.386 |
1.407 |
| N06 |
C07 |
1.339 |
1.327 |
| O54 |
C55 |
1.462 |
1.429 |
| C25 |
C23 |
1.351 |
1.343 |
| C07 |
N08 |
1.375 |
1.374 |
| N08 |
C23 |
1.382 |
1.370 |
| N08 |
C09 |
1.466 |
1.465 |
| C32 |
C30 |
1.384 |
1.377 |
| C60 |
C55 |
1.521 |
1.530 |
| C55 |
C56 |
1.513 |
1.530 |
| C55 |
C64 |
1.515 |
1.530 |
| C13 |
H1 |
1.080 |
1.080 |
| C15 |
H2 |
1.080 |
1.079 |
| C21 |
H3 |
1.080 |
1.080 |
| C01 |
H4 |
1.100 |
1.089 |
| C01 |
H5 |
1.100 |
1.091 |
| C01 |
H6 |
1.100 |
1.090 |
| C09 |
H7 |
1.100 |
1.089 |
| C09 |
H8 |
1.100 |
1.090 |
| C23 |
H9 |
1.080 |
1.080 |
| C25 |
H10 |
1.080 |
1.080 |
| C30 |
H11 |
1.080 |
1.080 |
| C32 |
H12 |
1.080 |
1.081 |
| C36 |
H13 |
1.100 |
1.089 |
| C36 |
H14 |
1.100 |
1.090 |
| C39 |
H15 |
1.100 |
1.091 |
| C39 |
H16 |
1.100 |
1.090 |
| C42 |
H17 |
1.100 |
1.090 |
| C42 |
H18 |
1.100 |
1.090 |
| C47 |
H19 |
1.100 |
1.089 |
| C47 |
H20 |
1.100 |
1.090 |
| C47 |
H21 |
1.101 |
1.090 |
| C52 |
H22 |
1.100 |
1.089 |
| C56 |
H23 |
1.100 |
1.090 |
| C56 |
H24 |
1.100 |
1.090 |
| C56 |
H25 |
1.100 |
1.091 |
| C60 |
H26 |
1.100 |
1.090 |
| C60 |
H27 |
1.100 |
1.090 |
| C60 |
H28 |
1.100 |
1.091 |
| C64 |
H29 |
1.100 |
1.090 |
| C64 |
H30 |
1.100 |
1.090 |
| C64 |
H31 |
1.100 |
1.089 |
| O71 |
H32 |
0.950 |
0.967 |
Bond Angles for 65P
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C42 |
C39 |
H15 |
109.4 |
109.7 |
| C42 |
C39 |
H16 |
109.4 |
109.8 |
| C42 |
C45 |
C46 |
120.3 |
118.7 |
| C45 |
C42 |
H17 |
108.7 |
109.5 |
| C45 |
C42 |
H18 |
108.7 |
109.5 |
| C39 |
C36 |
H13 |
108.9 |
109.7 |
| C39 |
C36 |
H14 |
108.9 |
109.7 |
| C19 |
C21 |
H3 |
120.3 |
120.0 |
| C17 |
C15 |
H2 |
120.6 |
120.0 |
| C68 |
C52 |
H22 |
106.9 |
109.5 |
| C21 |
C12 |
C09 |
120.6 |
120.0 |
| C12 |
C21 |
H3 |
120.4 |
120.0 |
| C15 |
C13 |
H1 |
119.5 |
119.9 |
| C52 |
O54 |
C55 |
127.5 |
114.0 |
| O54 |
C52 |
H22 |
107.8 |
109.4 |
| C34 |
C32 |
H12 |
120.1 |
119.8 |
| C29 |
C30 |
H11 |
120.0 |
120.1 |
| C12 |
C13 |
H1 |
119.4 |
120.0 |
| C12 |
C09 |
H7 |
108.5 |
109.5 |
| C12 |
C09 |
H8 |
108.5 |
109.5 |
| C28 |
C27 |
C25 |
131.9 |
134.4 |
| C28 |
C27 |
C07 |
119.9 |
119.3 |
| C01 |
C05 |
N06 |
115.8 |
119.1 |
| C05 |
C01 |
H4 |
109.5 |
109.5 |
| C05 |
C01 |
H5 |
109.5 |
109.4 |
| C05 |
C01 |
H6 |
109.5 |
109.4 |
| C05 |
N06 |
C07 |
117.9 |
122.0 |
| C27 |
C25 |
H10 |
127.0 |
126.5 |
| N06 |
C07 |
N08 |
126.6 |
133.2 |
| O54 |
C55 |
C56 |
105.0 |
109.5 |
| O54 |
C55 |
C64 |
109.9 |
109.5 |
| C25 |
C23 |
H9 |
124.8 |
125.1 |
| C07 |
N08 |
C23 |
107.6 |
110.0 |
| C07 |
N08 |
C09 |
126.3 |
125.0 |
| C09 |
N08 |
C23 |
125.9 |
125.0 |
| N08 |
C23 |
H9 |
124.8 |
125.1 |
| N08 |
C09 |
H7 |
108.5 |
109.5 |
| N08 |
C09 |
H8 |
108.5 |
109.5 |
| C32 |
C30 |
H11 |
120.0 |
120.1 |
| C60 |
C55 |
C64 |
111.1 |
109.5 |
| C56 |
C55 |
C64 |
110.9 |
109.5 |
| C55 |
C56 |
H23 |
109.5 |
109.5 |
| C55 |
C56 |
H24 |
109.4 |
109.5 |
| C55 |
C56 |
H25 |
109.5 |
109.5 |
| C55 |
C64 |
H29 |
109.5 |
109.5 |
| C55 |
C64 |
H30 |
109.5 |
109.4 |
| C55 |
C64 |
H31 |
109.4 |
109.5 |
| H4 |
C01 |
H5 |
109.5 |
109.5 |
| H4 |
C01 |
H6 |
109.5 |
109.5 |
| H5 |
C01 |
H6 |
109.5 |
109.4 |
| H7 |
C09 |
H8 |
109.5 |
109.5 |
| H13 |
C36 |
H14 |
109.5 |
109.7 |
| H15 |
C39 |
H16 |
109.5 |
109.7 |
| H17 |
C42 |
H18 |
109.5 |
109.5 |
| H19 |
C47 |
H20 |
109.5 |
109.5 |
| H19 |
C47 |
H21 |
109.5 |
109.5 |
| H20 |
C47 |
H21 |
109.5 |
109.5 |
| H23 |
C56 |
H24 |
109.5 |
109.4 |
| H23 |
C56 |
H25 |
109.5 |
109.5 |
| H24 |
C56 |
H25 |
109.5 |
109.4 |
| H26 |
C60 |
H27 |
109.4 |
109.5 |
| H26 |
C60 |
H28 |
109.5 |
109.4 |
| H27 |
C60 |
H28 |
109.5 |
109.5 |
| H29 |
C64 |
H30 |
109.5 |
109.4 |
| H29 |
C64 |
H31 |
109.5 |
109.5 |
| H30 |
C64 |
H31 |
109.5 |
109.5 |
Torsion Angles for 65P
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| F20 |
C19 |
C21 |
H3 |
0.4 |
360.0 |
| F18 |
C17 |
C15 |
H2 |
359.6 |
0.1 |
| C42 |
C39 |
C36 |
H13 |
181.3 |
175.5 |
| C42 |
C39 |
C36 |
H14 |
300.5 |
54.9 |
| H15 |
C39 |
C42 |
H16 |
240.1 |
120.6 |
| C45 |
C42 |
C39 |
H15 |
81.4 |
288.5 |
| C45 |
C42 |
C39 |
H16 |
201.4 |
167.9 |
| H17 |
C42 |
C45 |
H18 |
119.1 |
120.0 |
| H13 |
C36 |
C39 |
H14 |
240.7 |
120.6 |
| O69 |
C68 |
C52 |
H22 |
97.2 |
235.0 |
| C19 |
C17 |
C15 |
H2 |
179.9 |
180.0 |
| C12 |
C21 |
C19 |
H3 |
180.0 |
180.0 |
| C17 |
C15 |
C13 |
H1 |
179.7 |
180.0 |
| O71 |
C68 |
C52 |
H22 |
276.2 |
55.0 |
| O54 |
C52 |
C68 |
H22 |
116.4 |
120.0 |
| C46 |
C45 |
C42 |
H17 |
71.1 |
42.5 |
| C46 |
C45 |
C42 |
H18 |
312.0 |
282.6 |
| C45 |
C34 |
C32 |
H12 |
177.5 |
179.9 |
| C46 |
C29 |
C30 |
H11 |
179.9 |
180.3 |
| C19 |
C21 |
C12 |
H3 |
180.0 |
180.0 |
| C21 |
C12 |
C13 |
H1 |
180.7 |
180.0 |
| C21 |
C12 |
C09 |
H7 |
86.4 |
330.0 |
| C21 |
C12 |
C09 |
H8 |
205.2 |
210.0 |
| C12 |
C13 |
C15 |
H1 |
180.0 |
180.3 |
| C68 |
C52 |
O54 |
H22 |
244.2 |
240.0 |
| C52 |
O54 |
C55 |
C56 |
166.2 |
60.0 |
| C52 |
O54 |
C55 |
C64 |
285.5 |
300.0 |
| O35 |
C34 |
C32 |
H12 |
0.1 |
359.8 |
| C34 |
C32 |
C30 |
H11 |
181.6 |
180.0 |
| C32 |
C30 |
C29 |
H11 |
180.0 |
180.0 |
| C51 |
C05 |
C01 |
H4 |
178.0 |
270.0 |
| C51 |
C05 |
C01 |
H5 |
298.1 |
30.1 |
| C51 |
C05 |
C01 |
H6 |
58.1 |
150.0 |
| C15 |
C13 |
C12 |
H1 |
180.0 |
179.7 |
| C09 |
C12 |
C21 |
H3 |
0.8 |
0.0 |
| C09 |
C12 |
C13 |
H1 |
359.2 |
0.0 |
| C12 |
C09 |
N08 |
C23 |
267.3 |
265.0 |
| N08 |
C09 |
C12 |
H7 |
239.4 |
120.0 |
| N08 |
C09 |
C12 |
H8 |
120.6 |
240.0 |
| H7 |
C09 |
C12 |
H8 |
241.2 |
120.0 |
| C28 |
C27 |
C25 |
H10 |
353.6 |
0.3 |
| C01 |
C05 |
N06 |
C07 |
176.6 |
180.3 |
| H4 |
C01 |
C05 |
H5 |
240.0 |
239.9 |
| H4 |
C01 |
C05 |
H6 |
120.0 |
120.0 |
| H5 |
C01 |
C05 |
H6 |
240.0 |
240.1 |
| N06 |
C05 |
C01 |
H4 |
360.0 |
89.9 |
| N06 |
C05 |
C01 |
H5 |
120.0 |
210.0 |
| N06 |
C05 |
C01 |
H6 |
240.0 |
329.9 |
| C05 |
N06 |
C07 |
N08 |
182.0 |
180.0 |
| C28 |
C27 |
C25 |
C07 |
170.0 |
180.0 |
| C27 |
C25 |
C23 |
H9 |
179.6 |
180.1 |
| C28 |
C27 |
C07 |
C25 |
188.5 |
180.0 |
| C28 |
C27 |
C07 |
N06 |
4.7 |
0.4 |
| N06 |
C07 |
N08 |
C23 |
183.5 |
180.0 |
| N06 |
C07 |
N08 |
C09 |
359.7 |
0.0 |
| C55 |
O54 |
C52 |
H22 |
323.7 |
30.0 |
| C60 |
C55 |
O54 |
C64 |
121.7 |
240.0 |
| C56 |
C55 |
O54 |
C64 |
240.7 |
120.0 |
| O54 |
C55 |
C56 |
H23 |
180.0 |
60.0 |
| O54 |
C55 |
C56 |
H24 |
300.0 |
180.0 |
| O54 |
C55 |
C56 |
H25 |
60.0 |
300.0 |
| O54 |
C55 |
C64 |
H29 |
180.0 |
60.0 |
| O54 |
C55 |
C64 |
H30 |
300.0 |
179.9 |
| O54 |
C55 |
C64 |
H31 |
60.0 |
300.0 |
| C28 |
C27 |
C25 |
C23 |
173.6 |
179.4 |
| N08 |
C23 |
C25 |
H9 |
180.0 |
180.9 |
| C28 |
C27 |
C07 |
N08 |
183.1 |
180.1 |
| C09 |
N08 |
C07 |
C23 |
176.2 |
180.0 |
| C07 |
N08 |
C23 |
H9 |
177.1 |
180.0 |
| C07 |
N08 |
C09 |
H7 |
331.3 |
205.0 |
| C07 |
N08 |
C09 |
H8 |
212.4 |
325.0 |
| C25 |
C23 |
N08 |
H9 |
180.0 |
179.1 |
| C07 |
N08 |
C23 |
C09 |
176.2 |
180.0 |
| C23 |
N08 |
C09 |
H7 |
146.7 |
25.0 |
| C23 |
N08 |
C09 |
H8 |
27.9 |
145.0 |
| C21 |
C12 |
C09 |
N08 |
325.8 |
90.0 |
| C12 |
C09 |
N08 |
H7 |
120.6 |
240.0 |
| C12 |
C09 |
N08 |
H8 |
239.4 |
120.0 |
| C07 |
N08 |
C09 |
C23 |
184.5 |
180.0 |
| C09 |
N08 |
C23 |
H9 |
0.9 |
360.0 |
| H7 |
C09 |
N08 |
H8 |
118.9 |
240.0 |
| C29 |
C30 |
C32 |
H11 |
180.0 |
180.0 |
| O54 |
C55 |
C60 |
C64 |
239.0 |
120.0 |
| C56 |
C55 |
C60 |
C64 |
124.0 |
240.0 |
| C60 |
C55 |
C56 |
H23 |
297.2 |
300.0 |
| C60 |
C55 |
C56 |
H24 |
57.1 |
60.0 |
| C60 |
C55 |
C56 |
H25 |
177.2 |
180.0 |
| C60 |
C55 |
C64 |
H29 |
59.8 |
180.0 |
| C60 |
C55 |
C64 |
H30 |
179.9 |
300.0 |
| C60 |
C55 |
C64 |
H31 |
299.8 |
60.0 |
| O54 |
C55 |
C56 |
C64 |
118.7 |
240.0 |
| C60 |
C55 |
C56 |
C64 |
235.8 |
120.0 |
| C56 |
C55 |
C64 |
H29 |
295.6 |
300.0 |
| C56 |
C55 |
C64 |
H30 |
55.7 |
60.0 |
| C56 |
C55 |
C64 |
H31 |
175.6 |
180.0 |
| H23 |
C56 |
C55 |
H24 |
240.0 |
240.0 |
| H23 |
C56 |
C55 |
H25 |
120.0 |
120.0 |
| H24 |
C56 |
C55 |
H25 |
240.0 |
240.0 |
| O54 |
C55 |
C64 |
C56 |
244.4 |
120.0 |
| C64 |
C55 |
C56 |
H23 |
61.3 |
180.0 |
| C64 |
C55 |
C56 |
H24 |
181.3 |
300.0 |
| C64 |
C55 |
C56 |
H25 |
301.3 |
60.0 |
| H29 |
C64 |
C55 |
H30 |
239.9 |
240.1 |
| H29 |
C64 |
C55 |
H31 |
120.0 |
120.1 |
| H30 |
C64 |
C55 |
H31 |
240.0 |
240.0 |
| H2 |
C15 |
C13 |
H1 |
359.7 |
359.9 |
| H3 |
C21 |
C12 |
C09 |
0.8 |
0.0 |
| H4 |
C01 |
C05 |
N06 |
360.0 |
89.9 |
| C05 |
C01 |
H4 |
H5 |
120.0 |
120.0 |
| C05 |
C01 |
H4 |
H6 |
240.0 |
240.0 |
| H5 |
C01 |
H4 |
H6 |
120.0 |
120.0 |
| H5 |
C01 |
C05 |
N06 |
120.0 |
210.0 |
| C05 |
C01 |
H5 |
H4 |
240.0 |
239.9 |
| C05 |
C01 |
H5 |
H6 |
120.0 |
119.9 |
| H4 |
C01 |
H5 |
H6 |
240.0 |
240.0 |
| H6 |
C01 |
C05 |
N06 |
240.0 |
329.9 |
| C05 |
C01 |
H6 |
H4 |
120.0 |
120.1 |
| C05 |
C01 |
H6 |
H5 |
240.0 |
240.1 |
| H4 |
C01 |
H6 |
H5 |
120.0 |
120.0 |
| C12 |
C09 |
H7 |
H8 |
118.2 |
240.0 |
| H7 |
C09 |
N08 |
C23 |
146.7 |
25.0 |
| N08 |
C09 |
H7 |
H8 |
241.7 |
120.0 |
| C12 |
C09 |
H8 |
H7 |
241.8 |
120.0 |
| H8 |
C09 |
N08 |
C23 |
27.9 |
145.0 |
| N08 |
C09 |
H8 |
H7 |
118.3 |
240.0 |
| H10 |
C25 |
C23 |
H9 |
359.6 |
359.1 |
| H12 |
C32 |
C30 |
H11 |
1.6 |
359.9 |
| C39 |
C36 |
H13 |
H14 |
118.9 |
239.4 |
| C39 |
C36 |
H14 |
H13 |
241.1 |
120.6 |
| C42 |
C39 |
H15 |
H16 |
119.9 |
239.4 |
| H15 |
C39 |
C36 |
H13 |
61.2 |
295.2 |
| H15 |
C39 |
C36 |
H14 |
180.5 |
174.6 |
| C42 |
C39 |
H16 |
H15 |
240.1 |
120.6 |
| H16 |
C39 |
C36 |
H13 |
301.3 |
55.7 |
| H16 |
C39 |
C36 |
H14 |
60.6 |
295.1 |
| H17 |
C42 |
C39 |
H15 |
201.9 |
48.6 |
| H17 |
C42 |
C39 |
H16 |
321.8 |
288.0 |
| H17 |
C42 |
C45 |
C46 |
71.1 |
42.5 |
| C45 |
C42 |
H17 |
H18 |
241.3 |
240.0 |
| H18 |
C42 |
C39 |
H15 |
321.0 |
168.5 |
| H18 |
C42 |
C39 |
H16 |
80.9 |
47.9 |
| H18 |
C42 |
C45 |
C46 |
312.0 |
282.6 |
| C45 |
C42 |
H18 |
H17 |
118.7 |
120.0 |
| H20 |
C47 |
H19 |
H21 |
120.0 |
120.1 |
| H19 |
C47 |
H20 |
H21 |
240.0 |
239.9 |
| H19 |
C47 |
H21 |
H20 |
120.0 |
120.1 |
| H22 |
C52 |
O54 |
C55 |
323.7 |
30.0 |
| H23 |
C56 |
C55 |
C64 |
61.3 |
180.0 |
| C55 |
C56 |
H23 |
H24 |
120.0 |
120.0 |
| C55 |
C56 |
H23 |
H25 |
240.0 |
240.0 |
| H24 |
C56 |
H23 |
H25 |
120.0 |
119.9 |
| H24 |
C56 |
C55 |
C64 |
181.3 |
300.0 |
| C55 |
C56 |
H24 |
H23 |
240.0 |
240.0 |
| C55 |
C56 |
H24 |
H25 |
120.0 |
120.0 |
| H23 |
C56 |
H24 |
H25 |
240.0 |
240.0 |
| H25 |
C56 |
C55 |
C64 |
301.3 |
60.0 |
| C55 |
C56 |
H25 |
H23 |
120.0 |
120.1 |
| C55 |
C56 |
H25 |
H24 |
240.0 |
240.0 |
| H23 |
C56 |
H25 |
H24 |
120.0 |
119.9 |
| H26 |
C60 |
C55 |
C64 |
301.0 |
300.0 |
| H27 |
C60 |
H26 |
H28 |
120.0 |
120.0 |
| H27 |
C60 |
C55 |
C64 |
61.0 |
60.0 |
| H26 |
C60 |
H27 |
H28 |
240.0 |
240.0 |
| H28 |
C60 |
C55 |
C64 |
181.0 |
180.0 |
| H26 |
C60 |
H28 |
H27 |
120.0 |
120.0 |
| C55 |
C64 |
H29 |
H30 |
120.0 |
119.9 |
| C55 |
C64 |
H29 |
H31 |
240.0 |
240.0 |
| H30 |
C64 |
H29 |
H31 |
120.0 |
120.0 |
| C55 |
C64 |
H30 |
H29 |
240.0 |
240.1 |
| C55 |
C64 |
H30 |
H31 |
120.0 |
120.0 |
| H29 |
C64 |
H30 |
H31 |
240.0 |
240.0 |
| C55 |
C64 |
H31 |
H29 |
120.0 |
120.0 |
| C55 |
C64 |
H31 |
H30 |
240.0 |
240.0 |
| H29 |
C64 |
H31 |
H30 |
120.1 |
120.0 |