Atom Nomenclature for 65P

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 65P

Atom Name (V3) Atom Name (V2)
C13 C1
C15 C2
C17 C3
C21 C4
C28 C5
C01 C6
C05 C7
N06 N1
C07 C8
N08 N2
C09 C9
C12 C10
F18 F1
C19 C11
F20 F2
C23 C12
C25 C13
C27 C14
C29 C15
C30 C16
C32 C17
C34 C18
O35 O1
C36 C19
C39 C20
C42 C21
C45 C22
C46 C23
C47 C24
C51 C25
C52 C26
O54 O2
C55 C27
C56 C28
C60 C29
C64 C30
C68 C31
O69 O3
O71 O4
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32